TCONS_00010794 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010794
Unique NameTCONS_00010794
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1573

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010794 ID=TCONS_00010794|Name=TCONS_00010794|organism=Clytia hemisphaerica|type=transcript|length=1573bp
aacaaaaactATAATGGCAGAAGCAGTGGTCACAGCGGCTATCGGTGCTA
CGGTGAAAGAAATCATCGGTGCTATAAAGACAAAAAACCCTGTTCGAGAA
AACGTTCTTCAAATTTCTAGTAATTATCACGAAATGTTCAAAGTTCGTGT
GGAAAGTCCAGAGCTATTACTCATCAAGTTAAATAGAGGTGGGAATCTCA
AAGTGCAGTTGGTTCGATCAGATTCGGCCCTTGGCACCGCCCATATGGAA
GGTGTTTTTAACCACCTCAACAGTAAGGGTGGGAAGAAGTTTGCTAGATC
TTACAGATCGGATAAGGGAGGATTTAATACAAGACTCTCAGCGGATGCCC
AAGATGTGTTGGTTATCACACTGGAAGCTCACCACTTTTGCAGTGCGTTG
ATTGGTCAAGGTTCCACCGAAATGGACATCTCAGTTTCATATTGTTAATC
ACCACAAAAACAAACACTTagaagacttttttctttaaaaaattagctct
agtttagacggccgactttctacCTTGCCTTTCCATTGCATGAAATatgt
tgaaagaagacattgcattgacgtcaaaagatggCAATGCATTGTCTTTA
GACACCCAACTTTATgtccactttaattcacaattcgAATATTCATGGCG
AAAAGCGGGCCtcctaaactagagcttaatGATATAAATAATTCTAGTCA
GGTTTTGTACAATGTTGAAAGAAGACACTTTTTTTAANCGAAATGTTCAA
AGTTCGTGTGGAAAGTCCAGAGCTATTACTCATCAAGTTAAATAGAGGTG
GGAATCTCAAAGTGCAGTTGGTTCGATCAGATTCGGCCCTTGGCACCGCC
CATATGGAAGGTGTTTTTAACCACCTCAACAGTAAGGGTGGGAAGAAGTT
TGCTAGATCTTACAGATCGGATAAGGGAGGATTTAATACAAGTCTCTCAG
CGGATGCCCAAGACGTGTTGGTTATCACACTGGAAGCTCACCACTTTTGC
AGTGCGTTGATTGGTCAAGGATCCACCGAAATGGACATCTTAGTGTCATA
TTGTTAATCACCACAAAAGCAAACACTTagaagacttttttctttaaaaa
gttaGCTCTAGTTTGGACGGCCGATTTTCTACCTTGCCTTTCCATTGCAT
GAAATatgttgaaagaagacattgcattgacgtcaaaagatggCAATGCA
TTGTCTTTAGACACCAACTTTATgaccactttaattcacaattcgAATAT
TCATGGCGAAAAGCGGGCCtcctaaactagagcttaatGATATAAATGAT
TCTAGTCAGGTTTTGTACAATGTTGAAAGAAGACACTTTTTTTAATGTGT
TAATTTGTACGTCTGATGATTGCCGTTAGCCATGAAACTTGAAGTAATGT
ACTTTTTTTAACagcgaaattttgaaatttataaatgattctatattttt
aaaatgaaaattcaaaatagaaCTCTTAGCcataatgttgatttttttga
catcatcaaattttcagcaccctcgcgagccagggccgataaacgattct
gcgacttaaagaggccagtaccg
Run BLAST on NCBI

transcript from alignment at sc0000117:306347..307919+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010794 ID=TCONS_00010794|Name=TCONS_00010794|organism=Clytia hemisphaerica|type=transcript|length=1573bp|location=Sequence derived from alignment at sc0000117:306347..307919+ (Clytia hemisphaerica)
aacaaaaactATAATGGCAGAAGCAGTGGTCACAGCGGCTATCGGTGCTA CGGTGAAAGAAATCATCGGTGCTATAAAGACAAAAAACCCTGTTCGAGAA AACGTTCTTCAAATTTCTAGTAATTATCACGAAATGTTCAAAGTTCGTGT GGAAAGTCCAGAGCTATTACTCATCAAGTTAAATAGAGGTGGGAATCTCA AAGTGCAGTTGGTTCGATCAGATTCGGCCCTTGGCACCGCCCATATGGAA GGTGTTTTTAACCACCTCAACAGTAAGGGTGGGAAGAAGTTTGCTAGATC TTACAGATCGGATAAGGGAGGATTTAATACAAGACTCTCAGCGGATGCCC AAGATGTGTTGGTTATCACACTGGAAGCTCACCACTTTTGCAGTGCGTTG ATTGGTCAAGGTTCCACCGAAATGGACATCTCAGTTTCATATTGTTAATC ACCACAAAAACAAACACTTagaagacttttttctttaaaaaattagctct agtttagacggccgactttctacCTTGCCTTTCCATTGCATGAAATatgt tgaaagaagacattgcattgacgtcaaaagatggCAATGCATTGTCTTTA GACACCCAACTTTATgtccactttaattcacaattcgAATATTCATGGCG AAAAGCGGGCCtcctaaactagagcttaatGATATAAATAATTCTAGTCA GGTTTTGTACAATGTTGAAAGAAGACACTTTTTTTAANCGAAATGTTCAA AGTTCGTGTGGAAAGTCCAGAGCTATTACTCATCAAGTTAAATAGAGGTG GGAATCTCAAAGTGCAGTTGGTTCGATCAGATTCGGCCCTTGGCACCGCC CATATGGAAGGTGTTTTTAACCACCTCAACAGTAAGGGTGGGAAGAAGTT TGCTAGATCTTACAGATCGGATAAGGGAGGATTTAATACAAGTCTCTCAG CGGATGCCCAAGACGTGTTGGTTATCACACTGGAAGCTCACCACTTTTGC AGTGCGTTGATTGGTCAAGGATCCACCGAAATGGACATCTTAGTGTCATA TTGTTAATCACCACAAAAGCAAACACTTagaagacttttttctttaaaaa gttaGCTCTAGTTTGGACGGCCGATTTTCTACCTTGCCTTTCCATTGCAT GAAATatgttgaaagaagacattgcattgacgtcaaaagatggCAATGCA TTGTCTTTAGACACCAACTTTATgaccactttaattcacaattcgAATAT TCATGGCGAAAAGCGGGCCtcctaaactagagcttaatGATATAAATGAT TCTAGTCAGGTTTTGTACAATGTTGAAAGAAGACACTTTTTTTAATGTGT TAATTTGTACGTCTGATGATTGCCGTTAGCCATGAAACTTGAAGTAATGT ACTTTTTTTAACagcgaaattttgaaatttataaatgattctatattttt aaaatgaaaattcaaaatagaaCTCTTAGCcataatgttgatttttttga catcatcaaattttcagcaccctcgcgagccagggccgataaacgattct gcgacttaaagaggccagtaccg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006060XLOC_006060Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010794-exon-sc0000117-1491911889:306347..307919TCONS_00010794-exon-sc0000117-1491911889:306347..307919Clytia hemisphaericaexon
TCONS_00010794-exon-sc0000117-1510915933:306347..307919TCONS_00010794-exon-sc0000117-1510915933:306347..307919Clytia hemisphaericaexon
TCONS_00010794-exon-sc0000117-1575043694:306347..307919TCONS_00010794-exon-sc0000117-1575043694:306347..307919Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117supercontigsc0000117:306347..307919 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.222467 0.222835 0.368652 0.253473 0.140304 0.22174 0.882496 1.06253 2.87338 1.87696 3.47443 3.06562 5.08524 4.1769 11.9284 10.3059 1.70315 2.1879 5.05454 3.8513 1.01426 0.91648 4.26958 4.17064 1.72081 1.74767 3.94568 5.07655 24.3377 22.1595
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010794 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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