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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010787 ID=TCONS_00010787|Name=TCONS_00010787|organism=Clytia hemisphaerica|type=transcript|length=1815bpRun BLAST on NCBI transcript from alignment at sc0000117:276760..324756+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010787 ID=TCONS_00010787|Name=TCONS_00010787|organism=Clytia hemisphaerica|type=transcript|length=47997bp|location=Sequence derived from alignment at sc0000117:276760..324756+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00010787 vs. Swiss-Prot (Human)
Match: MEIOB (Meiosis-specific with OB domain-containing protein OS=Homo sapiens GN=MEIOB PE=2 SV=3) HSP 1 Score: 243.047 bits (619), Expect = 1.460e-72 Identity = 144/405 (35.56%), Postives = 229/405 (56.54%), Query Frame = 2
Query: 41 RIF--IKDLVVGPSKKAIVGLVIAKFDKRSFPDKKEYGVMKSLMNFTIRDTPEDFINVACWGSENFISNLSDSFGIGSVVQLSDFLVRTKGNTENEEKYNPSTQSAFNISVSESYTKLNAYTGEDHD-HIMTLSNYPIRDYDDYYTLGDILCNGHNLNGSMVNIMACVREVGEIKEFVSKAGKNIVKRELVLFDEHCNSFPLIIWDREVASSVNQWMENPIVLFLVDVKVQFEEFRQKMTGSVTAKTIITVYPDTPQAHHLAAYAQNNGGLMMNPFEGNNDCVDDIN-----DVYTIAEIEEKLNGNMDEMSMFSQPFSGIVYATVSHFDLDKESRNYVTIRCKLCKRRVPNETMICNNISCNNQSRDQMTSSLEFR--ISLSDHTMGLDNFLMVRDVAEKTLQC 1225
RIF + DL + ++G+VI K D + FPD+K G + +FTIRD+P F+N A WG+E++I +LSDSF +G V + + L++ K E EEK++P+T S + +SE+++ + + + D +++L + P+++ DYY+LGDI+ NGH+LNG ++N++A V+ VGE K F + + + E+ L+DE +SF + WD E WM V+F DV++ F++FR MT +V +KTIIT PD P+A+ L + + N + E ++ + IN DVYT+ E+L G + + P GI+YA +S ++D E+ V RC C V + +C +CN S D + L F I L+DHT L + + VAE+TL C
Sbjct: 8 RIFTTLSDLQTNMANLKVIGIVIGKTDVKGFPDRKNIGSERYTFSFTIRDSPAHFVNAASWGNEDYIKSLSDSFRVGDCVIIENPLIQRK-EIEREEKFSPATPSNCKLLLSENHSTVKVCSSYEVDTKLLSLIHLPVKESHDYYSLGDIVANGHSLNGRIINVLAAVKSVGEPKYFTTSDRRKGQRCEVRLYDETESSFAMTCWDNESILLAQSWMPRETVIFASDVRINFDKFRNCMTATVISKTIITTNPDIPEANILLNFIRENKETNVLDDEIDSYFKESINLSTIVDVYTV----EQLKGKALKNEGKADPSYGILYAYISTLNIDDETTKVVRNRCSSCGYIVNEASNMCT--TCNKNSLDFKSVFLSFHVLIDLTDHTGTLHSCSLTGSVAEETLGC 405 The following BLAST results are available for this feature:
BLAST of TCONS_00010787 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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