TCONS_00010784 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010784
Unique NameTCONS_00010784
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length330

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010784 ID=TCONS_00010784|Name=TCONS_00010784|organism=Clytia hemisphaerica|type=transcript|length=330bp
GAAAaacccaaaataaaaaaagataacttAAAAAAATAGAGTAAATTTAA
CTAGAAAAACAAAGACGAATTTAAAAAACGAAACAGCAATAAACATGAGT
GACGAAAAAACGAAAGAACaaataaatgataaaaatgtagaagaagaaga
aacaaaaaagaaaaaaaagaagaagaagcaaaAAGACGAAGAAATAGAAG
TGGCAGACAAATcaaccaaaaaagaaaagaaacataaaaataaGGTATCT
TCTTTTACAGCTTTACCTATCTAAGACATATGGCGTTCTAAGTGTGAAGG
CCATGCTAAGACACCATCCAAACGTGCAAA
Run BLAST on NCBI

transcript from alignment at sc0000117:118760..119407+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010784 ID=TCONS_00010784|Name=TCONS_00010784|organism=Clytia hemisphaerica|type=transcript|length=648bp|location=Sequence derived from alignment at sc0000117:118760..119407+ (Clytia hemisphaerica)
GAAAaacccaaaataaaaaaagataacttAAAAAAATAGAGTAAATTTAA
CTAGAAAAACAAAGACGAATTTAAAAAACGAAACAGCAATAAACATGAGT
GACGAAAAAACGAAAGAACaaataaatgataaaaatgtagaagaagaaga
aacaaaaaagaaaaaaaagaagaagaagcaaaAAGTTCAGGTTGGTGATT
TTCTAGCATTGGACATCCCCTTCATTTTTCTAGCAGTTTGGGTTTTGAAC
CTCCATATAATTCCAATGTCTTCTGAACACTGCAAACCCTCATAAGTTGT
CTCCAAATTATGTTTCCTTTGCGTTATTGAGCTATGAagaatatttcatg
aaaattatTCCTACTTAAATTACTCTCAAGCGTTTAATAAACGGAGGGGG
GGCtggaaattttgataaattgggggacctaattaccgaTGGTTCCAATC
CCCTTTATTCATTCGCCAAAAACTGGAAACTGTCTTGTTATTATTTGCTT
AGGACGAAGAAATAGAAGTGGCAGACAAATcaaccaaaaaagaaaagaaa
cataaaaataaGGTATCTTCTTTTACAGCTTTACCTATCTAAGACATATG
GCGTTCTAAGTGTGAAGGCCATGCTAAGACACCATCCAAACGTGCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006057XLOC_006057Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010784-exon-sc0000117-1491911889:118760..118943TCONS_00010784-exon-sc0000117-1491911889:118760..118943Clytia hemisphaericaexon
TCONS_00010784-exon-sc0000117-1510915933:118760..118943TCONS_00010784-exon-sc0000117-1510915933:118760..118943Clytia hemisphaericaexon
TCONS_00010784-exon-sc0000117-1575043694:118760..118943TCONS_00010784-exon-sc0000117-1575043694:118760..118943Clytia hemisphaericaexon
TCONS_00010784-exon-sc0000117-1491911889:119262..119407TCONS_00010784-exon-sc0000117-1491911889:119262..119407Clytia hemisphaericaexon
TCONS_00010784-exon-sc0000117-1510915933:119262..119407TCONS_00010784-exon-sc0000117-1510915933:119262..119407Clytia hemisphaericaexon
TCONS_00010784-exon-sc0000117-1575043694:119262..119407TCONS_00010784-exon-sc0000117-1575043694:119262..119407Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117supercontigsc0000117:118760..119407 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.8474	6.18383	11.5395	13.6246	12.991	10.2611	8.25849	8.78148	1.30533	2.92532	0.372104	0	0.416124	1.25947	3.50435	3.94961	5.02675	3.96277	1.02369	1.22939	3.20024	3.18959	4.33264	3.98572	0	0	2.37911	0	1.10813	1.79008
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010784 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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