TCONS_00010779 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010779
Unique NameTCONS_00010779
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010779 ID=TCONS_00010779|Name=TCONS_00010779|organism=Clytia hemisphaerica|type=transcript|length=437bp
GTCGAGTTTCCACAAATCCAAACTATATAAAGCGTTGTTATATGCGGATA
TTCTATAAAATTTGTCCATCATTAATTACCTCCTCGTGTAGAAACATTAT
ACCAAAGAATCTATCAAGATGAAGTGTTTGGTAATTTTTGCTTTGGTTTG
CGTGGCTTTTGTTGCTGCTGATTTTTATGACGAAGAAGGCTCTGGTGAGC
AATCTtgtCTACAATAGTTCAAAGAATGTCGAAATGATGCTGAGGGTTGG
AGAGGCAAATATGAATGTAGCCGTCATTTCTACAAATGCCGTAAAGGAGA
AGTTGAAGATTGTAAGAAGGAGTGTAACGAAGATTTTCACGGATGTAGAA
AAGAAGGAGACACCATTGTCGCTAAATGTGTTTGGGAAAATTTCAAATGC
AGAGTTAATTGTTCATCGTGACATTTGTAACTGTTTT
Run BLAST on NCBI

transcript from alignment at sc0000117:64342..66450+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010779 ID=TCONS_00010779|Name=TCONS_00010779|organism=Clytia hemisphaerica|type=transcript|length=2109bp|location=Sequence derived from alignment at sc0000117:64342..66450+ (Clytia hemisphaerica)
GTCGAGTTTCCACAAATCCAAACTATATAAAGCGTTGTTATATGCGGATA
TTCTATAAAATTTGTCCATCATTAATTACCTCCTCGTGTAGAAACATTAT
ACCAAAGAATCTATCAAGATGAAGTGTTTGGTAATTTTTGCTTTGGTTTG
CGTGGCTTTTGTTGCTGCTGATTTTTATGACGAAGAAGGCTCTGGTGAGC
AATCTGTAAGTTTGCCAGCtgccacacaacgttgtttcaacgtttatcta
acgctcacaacgtccatataacgttagctgaacgttgaaacaatgttatg
aaaaatcatacttttATCTTAAGGTTAAGTTGATGAATTTTCGTGTGGAC
TTTTTCCCGCGAattgaaaatcttaatttttaggCAGGCTAAATTTTTAC
CAATTTCTTTCATCTTTCTAGGTGTTTTGGCTAAAATTTGGATTTAAATA
TTTGGCGAAGACAAAAAAAACcgaaattcacgaaaatcgtgaaaattaat
ccactgtTAACTTTTGtacttatttcaaaatgaatttttatcaGTTGATA
TGAATGGcacacacgctttttttataagaataatgttTTTTCGTTCCATC
ATGGATAATCTTAGCTATTTTGGGGGAAGTCgtcttaaaatattattatg
gtATTCTTGGGTTAGAAACAAAACTCAACTTGAATTTAACGTAATACTGT
ACACATCCTGaaacataaaatggcatttttgtgagtGTTGTACTCGAGAT
AATAGGCGATGCTCTGAAAATTAATTCTGTCAAAGCTCATGATGATGATT
TTCTTAGCATAttcctaattttttttgtagATCTCGTCAGGAATTTTCAT
AAAgtatactttttatttcaagtgtCTACAATAGTTCAAAGAATGTCGAA
ATGATGCTGAGGGTTGGAGAGGCAAATATGAATGTAGCCGTCATTTCTAC
AAATGCCGTAAAGGAGAAGTTGAAGATTGTAAGAAGGAGGTATGTAAACG
AAAAACCGGGGGAGTACCTAGGCAAGTGAAGGGTAGGGGTATGTGCCGCC
TTTAAGGGTACCATTTTTGAAACCTGACAGTCCCTGTAAGTATtgggaaa
aatcagaaaattaaatctCAGCACCAATGAAAATCGTAAAGTTCACAAAC
TGTTTAGTCTCGCTAAGGTTCCGAGATTCGAAAGTAGGGCGGCGCATATC
ATCTTTCCTCCCCCGTgaagaaagtatttcaaaataatctACATTGAATA
GCGTGAAGTACTTAGTCGCTGGAAATCGTGAacttttttaccaaaattac
aattacaatatTGTGCTCTCGATCATTTAAAACtagtaaaaaacattttt
aattgattttggCTGTAAAAAGTTGTAGTCATCCTACTTCCGCTACTAAT
TAAAGTTAAACCTCCAATTAACGGACACTATGAATGGCGGACACCTCTAA
TTAGCTGGCAATTCTATTTTATCCTGCCATtttctagtcaaatcctcaga
aaaaagtttccaaaaggtagacactcaattagcggacccacCAATTAGCG
GAAAGTTTTTTTGGTACGAAATAGCCAAACCCCTACTTTTTCCTCTCTGA
CATCGACGGTCAAACTGGTCACAgacttaaaaaaattgacatgATTGATT
AACTCAAACTTTACTTCTTAACCACTTTAAAGTTTCATTGAACATCGGTG
AATTTGCTTACTtcacaaaaatgataaattacaGAAACCTCAagactttt
agttttatgattcacaaaaactaaattgttgcaTTTGAATAATCattctc
ttgttcttctatgTCCTGGTGGTTTTACATAATTACCCTTAATAGTACCT
TATACAAAAATAAGAGTACAGAATTGAAAAGTTTCTCAAAAGGTGGACAC
TTACCCTATTCCCCGATAGTGTCCACTAATTGGAGGTTCCACTGTACAAC
AATATTGAGacaaattgatttatttttttctatcgaAATTTTAGTGTAAC
GAAGATTTTCACGGATGTAGAAAAGAAGGAGACACCATTGTCGCTAAATG
TGTTTGGGAAAATTTCAAATGCAGAGTTAATTGTTCATCGTGACATTTGT
AACTGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006053XLOC_006053Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010779-exon-sc0000117-1491911889:64342..64546TCONS_00010779-exon-sc0000117-1491911889:64342..64546Clytia hemisphaericaexon
TCONS_00010779-exon-sc0000117-1510915933:64342..64546TCONS_00010779-exon-sc0000117-1510915933:64342..64546Clytia hemisphaericaexon
TCONS_00010779-exon-sc0000117-1575043694:64342..64546TCONS_00010779-exon-sc0000117-1575043694:64342..64546Clytia hemisphaericaexon
TCONS_00010779-exon-sc0000117-1491911889:65214..65330TCONS_00010779-exon-sc0000117-1491911889:65214..65330Clytia hemisphaericaexon
TCONS_00010779-exon-sc0000117-1510915933:65214..65330TCONS_00010779-exon-sc0000117-1510915933:65214..65330Clytia hemisphaericaexon
TCONS_00010779-exon-sc0000117-1575043694:65214..65330TCONS_00010779-exon-sc0000117-1575043694:65214..65330Clytia hemisphaericaexon
TCONS_00010779-exon-sc0000117-1491911889:66336..66450TCONS_00010779-exon-sc0000117-1491911889:66336..66450Clytia hemisphaericaexon
TCONS_00010779-exon-sc0000117-1510915933:66336..66450TCONS_00010779-exon-sc0000117-1510915933:66336..66450Clytia hemisphaericaexon
TCONS_00010779-exon-sc0000117-1575043694:66336..66450TCONS_00010779-exon-sc0000117-1575043694:66336..66450Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117supercontigsc0000117:64342..66450 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.165819	0	0	0	0.162419	0	0.103631	76.5807	65.4509	0.176714	0.284462	14.251	20.4735	383.918	306.37	41.3729	36.9849	24.9778	25.1415	15.8712	16.5503	0	0	0.172708	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010779 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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