TCONS_00010777 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010777
Unique NameTCONS_00010777
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1024

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010777 ID=TCONS_00010777|Name=TCONS_00010777|organism=Clytia hemisphaerica|type=transcript|length=1024bp
NNTTAAGATACCTATGGTTTACTATCTAaataaatttcctaaaaattggA
ATCCTAAAtctttcaaatataatactaaatattttttgtCTAAATAAGAT
GCTATTCATATCATTTGGACGATCAAGTTAATTATAAATAAACCCATACT
TAAAAAACAAGCTATAATAATCAGATAACAAATAATTCACACAAACAATG
TCATCTTTAATGGGTTCtctttattattttcaataattttcaatgTAGAC
TCACAAAGCAATTTATGAATGTTTTCTATAGTATTCCTTGCATCAATGAT
TTCCCAAGAATCATCTTGAAGTTGCTGAAATTTTTCTTGGACAGTCTTTT
GGAAACTGGATACTTCATAACGTTCACCACCAAAATCTCCACGTGTAGAA
GCTTCATCAATAGGAATATCCAGATAGAATACTTTATCAGGTGTTGGCAA
TTCTCTATCACAAGATTTACACCATTCAAAATCAAGACCTTTAGCTGAAG
TAAATGCCACACCTGAAAAGGCGTAACGATCAACAACTAAGGTAACACCA
GATTCTAATTTCTCCTTCATTAAAGGTACAAGTTCCCAGCGATTGGCTGA
AAAAAGCAGATGGACAGCACGATCATGTAACTCacacttcttttcaatat
aatcATTGATGACTTTTCCGATTTCAGTAGAACGTTCTGGGAACCTCCAC
TGTTCAGCCTGGTTTCCATGGTTGTTTAAATATTCAACAAGTTTTTTACA
TTGAGTACTTTTACCACTTTTGTCACATCCCTCAAACACAATCAAACTTC
CACGTGTCATtatgatttttctttgttttctaacAAAACTCTGTAAGAAT
TAGCGAAATCTACCAACTTAGTGATAAAAAAGTGTAGCTAGGGTTCATTT
GACTTTTGGACTGAACTGGTTTGGCCTTACTTTTTCCAATGCTGGgaaat
caaaatatataataatatttttcgtTTTGTCAGAATCTCAGCCTGGTGTT
AAGATGTTTTTTGCTGGCTTTTTC
Run BLAST on NCBI

transcript from alignment at sc0000117:50887..52104+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010777 ID=TCONS_00010777|Name=TCONS_00010777|organism=Clytia hemisphaerica|type=transcript|length=1218bp|location=Sequence derived from alignment at sc0000117:50887..52104+ (Clytia hemisphaerica)
NNTTAAGATACCTATGGTTTACTATCTAaataaatttcctaaaaattggA
ATCCTAAAtctttcaaatataatactaaatattttttgtCTAAATAAGAT
GCTATTCATATCATTTGGACGATCAAGTTAATTATAAATAAACCCATACT
TAAAAAACAAGCTATAATAATCAGATAACAAATAATTCACACAAACAATG
TCATCTTTAATGGGTTCtctttattattttcaataattttcaatgTAGAC
TCACAAAGCAATTTATGAATGTTTTCTATAGTATTCCTTGCATCAATGAT
TTCCCAAGAATCATCTTGAAGTTGCTGAAATTTTTCTTGGACAGTCTTTT
GGAAACTGGATACTTCATAACGTTCACCACCAAAATCTCCACGTGTAGAA
GCTTCATCAATAGGAATATCCAGATAGAATACTTTATCAGGTGTTGGCAA
TTCTCTATCACAAGATTTACACCATTCAAAATCAAGACCTTTAGCTGAAG
TAAATGCCACACCTGAAAAGGCGTAACGATCAACAACTAAGGTAACACCA
GATTCTAATTTCTCCTTCATTAAAGGTACAAGTTCCCAGCGATTGGCTGA
AAAAAGCAGATGGACAGCACGATCATGTAACTCacacttcttttcaatat
aatcATTGATGACTTTTCCGATTTCAGTAGAACGTTCTGGGAACCTCCAC
TGTTCAGCCTGGTTTCCATGGTTGTTTAAATATTCAACAAGTTTTTTACA
TTGAGTACTTTTACCACTTTTGTCACATCCCTCAAATACAATCAAACTTC
CACGTGTCATgatgatttttctttgttttctaacAAAATTCTGTAAGAAT
TAGTGAAATCTACCAACTTAGTGTTAAAAAAGTGTAGCTAGGGTTCATTT
GACTTTTGGACTGAACTGGTTTGGCCTTACTTTTTCcaatcaaaatatat
aataatatNGCTTTTGTCACATCCCTCAAACACAATCAAACTTCCACGTG
TCATtatgatttttctttgttttctaacAAAACTCTGTAAGAATTAGCGA
AATCTACCAACTTAGTGATAAAAAAGTGTAGCTAGGGTTCATTTGACTTT
TGGACTGAACTGGTTTGGCCTTACTTTTTCCAATGCTGGgaaatcaaaat
atataataatatttttcgtTTTGTCAGAATCTCAGCCTGGTGTTAAGATG
TTTTTTGCTGGCTTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006051XLOC_006051Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010777-exon-sc0000117-1491911889:50887..51662TCONS_00010777-exon-sc0000117-1491911889:50887..51662Clytia hemisphaericaexon
TCONS_00010777-exon-sc0000117-1510915933:50887..51662TCONS_00010777-exon-sc0000117-1510915933:50887..51662Clytia hemisphaericaexon
TCONS_00010777-exon-sc0000117-1575043694:50887..51662TCONS_00010777-exon-sc0000117-1575043694:50887..51662Clytia hemisphaericaexon
TCONS_00010777-exon-sc0000117-1491911889:51857..52104TCONS_00010777-exon-sc0000117-1491911889:51857..52104Clytia hemisphaericaexon
TCONS_00010777-exon-sc0000117-1510915933:51857..52104TCONS_00010777-exon-sc0000117-1510915933:51857..52104Clytia hemisphaericaexon
TCONS_00010777-exon-sc0000117-1575043694:51857..52104TCONS_00010777-exon-sc0000117-1575043694:51857..52104Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117supercontigsc0000117:50887..52104 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
74.2638	65.3723	55.4983	59.6007	16.848	11.7827	10.7455	9.32624	10.7114	6.99737	3.96924	4.3777	1.99762	1.92422	4.79535	4.6952	13.9211	10.4838	0.647841	1.11372	7.44961	7.32891	51.7086	45.6039	4.7672	6.63219	6.20772	5.09619	18.4084	21.8565
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018094Thymidylate_kinase
IPR018095Thymidylate_kin_CS
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0004798thymidylate kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0006233dTDP biosynthetic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006233 dTDP biosynthetic process
molecular_function GO:0005524 ATP binding
molecular_function GO:0004798 thymidylate kinase activity
Blast
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BLAST of TCONS_00010777 vs. Swiss-Prot (Human)
Match: KTHY (Thymidylate kinase OS=Homo sapiens GN=DTYMK PE=1 SV=4)

HSP 1 Score: 216.083 bits (549), Expect = 4.481e-68
Identity = 108/203 (53.20%), Postives = 140/203 (68.97%), Query Frame = -2 
Query:  208 RGSLIVFEGCDKSGKSTQCKKLVEYLNNHGNQAEQWRFPERSTEIGKVINDYIEKKCELHDRAVHLLFSANRWELVPLMKEKLESGVTLVVDRYAFSGVAFTSAK-GLDFEWCKSCDRELPTPDKVFYLDIPIDEASTRGDFGGERYEVSSFQKTVQEKFQQLQDDS---WEIIDARNTIENIHKLLCESTLKIIENNKENPL 804
            RG+LIV EG D++GKSTQ +KLVE L   G++AE  RFPERSTEIGK+++ Y++KK ++ D +VHLLFSANRWE VPL+KEKL  GVTLVVDRYAFSGVAFT AK     +WCK  D  LP PD V +L + + +A+ RG FG ERYE  +FQ+     F QL  D+   W+++DA  +IE +H+ +   +   I    E PL
Sbjct:    5 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIRTATEKPL 207
The following BLAST results are available for this feature:
BLAST of TCONS_00010777 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KTHY4.481e-6853.20Thymidylate kinase OS=Homo sapiens GN=DTYMK PE=1 S... [more]
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