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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010776 ID=TCONS_00010776|Name=TCONS_00010776|organism=Clytia hemisphaerica|type=transcript|length=657bp
aagattttaaaagatcTAGATTCATTCGAAAGCACTTGAGTTACGTTGAA
GcacatgattttttttgctaaaatttagAGCGTAGAAAAAgttgtttttc
gaaaaataagatGGCTATTTTTAGTATGAATTTCGTTTTGATTTTGTTGg
catctttttttatttcttcgcAGGGAATGGACATGAAGAACTGCGACGCT
AAAGCTCCAATCCAGTTTTCAGTCACTCAATTCCCAAGTAAACTACCTCT
CAAAAATAATGCAACTTTCCACGTATCTGCTggtattcaaataaaaaatt
atgttcttccaaagaaaatcaaaattaaagttgaTGTCTCTAAACATATG
TTGTTCTGGGTGAAATTACCTTGTATTGGGTGCGATCAATTACTGTCCTG
TGACAAGTTACCACAACTTTGTATGGTGAAAGACTTTTGCACTGATTGCT
CTTTGAACGTCAAAAATGTCAAGATTCGAATGCCAGGagatattgaacaa
aaaatacCAGGATTTGTTCCAAATTTTGCGATTGACggTAAATACTGGCT
GAAACTACGAGTTGTCAATGCTGATAATGAGAAAGAAACGATCGCATGTG
CTGAAATTATTACAAAATTAGACGcttaatataataaaaaaaaaatggaa
agcaATT Run BLAST on NCBI protein sequence of TCONS_00010776-protein >TCONS_00010776-protein ID=TCONS_00010776-protein|Name=TCONS_00010776-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MAIFSMNFVLILLASFFISSQGMDMKNCDAKAPIQFSVTQFPSKLPLKNN
ATFHVSAGIQIKNYVLPKKIKIKVDVSKHMLFWVKLPCIGCDQLLSCDKL
PQLCMVKDFCTDCSLNVKNVKIRMPGDIEQKIPGFVPNFAIDGKYWLKLR
VVNADNEKETIACAEIITKLDA Run BLAST on NCBI transcript from alignment at sc0000117:3349..8527+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010776 ID=TCONS_00010776|Name=TCONS_00010776|organism=Clytia hemisphaerica|type=transcript|length=5179bp|location=Sequence derived from alignment at sc0000117:3349..8527+ (Clytia hemisphaerica)
aagattttaaaagatcTAGATTCATTCGAAAGCACTTGAGTTACGTTGAA
GcacatgattttttttgctaaaatttagAGCGTAGAAAAAgttgtttttc
gaaaaataagatGGCTATTTTTAGTATGAATTTCGTTTTGATTTTGTTGg
catctttttttatttcttcgcAGGGAATGGACATGAAGAACTGCGGTGAG
TATTTTCACACCCGTGTGTCACAGACCCTGTGGTAAGTCGCCCAACTGGA
AAATTGGGCCGAACTTTCGACAGCGATGGGAAAATACCCTCCAATTTTAG
CCCCACTAGGAAGTCATTAGACATAAGActttaatttcatccccatttga
aaattAAGGGGAAAAATTGCACTttaaaaccatccccattggattttttg
agtttagaaattttcatcccaatcccattataagaaaattttccaccggg
gctgttGTACAAGGGTGTCATAACTTTTCTTAGATACTTTTCTTACAAGG
AGATATAGTTCTGGTTATTGGACGACTTCTAATACCCCAGCAGACACACA
ACcatttttcgacgtttatccaacgttcacaacgtccatataacattaaa
gtctgtccagatataattggcagtggaaacaagaatgcctgtaactttta
atagtcaaatataattccaaaattttttttggttgttttagagaatcaaa
agcgctatatttgaatgtatttttgttgaaaagttcGCGATtattagcgg
ttaaatttgcgattgcaaaaattgagctttttttctttttatgctataac
atcatttttaaactagtggtagttcaaccttaggtaaAGAAGGTTGTTGA
AATTCAAGGCAAACGGAAAAGTCCtttggaagatatgggacccgagaccc
gaaataccccttggtagcatatttctgtgaaatatcaaatctccaaattt
ttactaaaaacgggggttatgttatgttatgttaacaatgcaattaaaag
ttggaaagtgttaaGTGTTGCTGCATTGGCGTTATNaacagtgcaattaa
aagttggaaagtgttaaGTGTTGCTGCATTGGcgttattggtatcattga
tcatTTCGAAACAAAGTGAATACACAATTTGATTGTTTTATTGAAACGAA
CGCATattgaacttatattgccttttttatttttaagtaattaaagaact
ttgctaattcccaaaacactatgGTCGTGTTTAGACttcaaagtttaagt
ttaaggtttaagtagtactttgttgatatgggaattcaattataatcact
tttcttttgtcatcatcgattggcgatctcgaggaatctccttNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaagatt
tcagggaatccctctgcaaaacactaattcgtgttcgttgaagccattac
tgctagagatgctccgagcgtctctaagtcataaatttcacgttcttttt
tattcatttacaAAAGGAACATGCTTTTCACTCGCAAATtttgatttcgt
ctattcagaaaactgtaacgaaatcgtaaaaactttttttttaaaccaga
gggtgattcctttttaaactttggtttaactaatgagaagcgtgccgtta
aatcagaggaatgtaaagagatggaaaaacagcttttctgattactcaaa
gttcaatgATCACTTCTTNaactcccttaagggcaagagacctggtatat
gacgagccgtttttccattgttttcaagaagctgtttttccatctcttta
cattcctctggttaaatacaaaaggaatataaaagaaacatgtagaccta
attgctttaaaccttggtctgaacacgacctaagtacagtttggctatga
gttCATTATCGTaaaaagatcgtaaaatgtgttattaTATGTGAttgaaa
aaaactgttttatatcatcactacccccgtttctattaaaaatttggaga
tttgatgTTTCACAGAAAAATGCTACCAATGNgatttgacgataaaaatg
aaaatttgtttttccttttttgccgattactaattcaatttttaagaata
aggagcaatatttttaccaatgtatagaaaagaaattcttaacgcaatga
tatcaaattggttcttgtaaaactgtcggAAGTCGagcaaaatcaagatg
aagttataattttctcgagctctagctttccatattatggtgcggtcatg
atgcggttatatcagtagaatcgctaggaaattctgagcaagaagatata
ggtacctttttgtataggagaggtgtacccaaaatataagccctaaaagt
ttgcgcataatcaggcttgaaacaaaagaattttgtcacaacacgctaat
taNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCgtcataaactcccttaagggcaag
agacctggtatatgacgagccgtttttccattgttttcaagaagctgttt
ttccatctctttacattcctctggttaaatacaaaaggaatataaaagaa
acatgtagacctaattgctttaaaccttggtctgaacacgacctaagtac
agtttggctatgagttCATTATCGTaaaaagatcgtaaaatgtgttatta
TATGTGAttgaaaaaaactgttttatatcatcactacccccgtttctatt
aaaaatttggagatttgatgTTTCACAGAAAAATGCTACCAATGGggtac
aatgctggacaaaaggtttgtagacttctgcaatatttgcaaaatacttc
aatatcgatcaaaaacaagttcccaagaggctctgggtgctttccaaacc
cattcaaagctgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacttccat
cccctttcagacacattgaagagtcattttgctctatttctcatcatttt
tcactgaaatttcatttgtctacaaccttttgtccggcattgtatttcag
gtcccatatcttccgaaggctttttccgtttgccttgaaatttgacaatc
tTCTCAagctaaggttgaactaccactggtgtaaaaatgaacctTGTggc
gaaaatagaaaaaaagttcaatttttgcaatcgcaaatttaaccgctaaa
aatcacgaatttttcaacaaaaaatacattaaaatatagcgcttttgatc
ttctaaaagaagcaaaaacattttttgcaattATATCgagctatcaaaag
ttacagacattcttgtttccactgccaattatatctaaACAGACTTTAGA
TGAGCGTTGAatcaacgttgtgtgccagctgggaccttgctttcattaaa
atttacctccgaattttgagctgtgaaccgtGAAAATTCCTTTTCCGCGA
GAAATTTTTCCCTTAAGGGTAGTCATTCATGAGCCTTGTTcctaaatatt
tcatttttgacactttttaagCTATCTCTTTAGAAATATGTTACATGTTA
CTATATCTATAATTCCTTATTGAAAATATCTATCAAATTCTTGTATTTAG
ACGCTAAAGCTCCAATCCAGTTTTCAGTCACTCAATTCCCAAGTAAACTA
CCTCTCAAAAATAATGCAACTTTCCACGTATCTGCTggtattcaaataaa
aaattatgttcttccaaagaaaatcaaaattaaagttgaTGTCTCTAAAC
ATATGTTGTTCTGGGTGAAATTACCTTGTATTGGGTGGTAAGTTTAAGTT
CAAAATGATGTttggaaaattaagaaattcTTTCTCTCGCATTTTTCAAt
gagcaactccaattttcaggtcagcttagcattctagcttattttctgaa
aaatttgccttAACCACCCCTGATATGATAcaatatttatgcttattggg
tcaaaGGATATCGTTTGTCATGGTCAGAtcatctaaaaagcttttacttt
acgagttGTTGAAAAAACGAACCTTAGCAACCTGGATGTTTATAAATGTG
TAGNAAAATGgtcgatttttttatttgatttgctGAATCTTGTCAAATTT
CTTAGCTAAAATTAGTCGTCCATTAAAAtaactttgatttttttgcatta
CTTTCAGCGATCAATTACTGTCCTGTGACAAGTTACCACAACTTTGTATG
GTGAAAGACTTTTGCACTGATTGCTCTTTGAACGTCAAAAATGTCAAGAT
TCGAATGCCAGGagatattgaacaaaaaatacCAGGATTTGTTCCAAATT
TTGCGATTGACgtaagtaaattttttttattaactcAATATAATCagcag
tggagacaaaaaaggctgtgaCTTTTAATAAACATAGCGTTTATAaccat
atgcaggctcagtttttggtacctaaacaatggctctattctattgtttg
agaatgctgagcataatgcgagcctggaATAGGGGCATACACATGTAATG
CAAATTAAATAaaggttttgtgctcgttaaaaagatagtTCCGAgtgaaa
tattatcaaaaaagaaaagcggtgtaaattttatcaaaatattttctttt
tcttttagggTAAATACTGGCTGAAACTACGAGTTGTCAATGCTGATAAT
GAGAAAGAAACGATCGCATGTGCTGAAATTATTACAAAATTAGACGctta
atataataaaaaaaaaatggaaagcaATT Coding sequence (CDS) from alignment at sc0000117:3349..8527+ >TCONS_00010776 ID=TCONS_00010776|Name=TCONS_00010776|organism=Clytia hemisphaerica|type=CDS|length=2076bp|location=Sequence derived from alignment at sc0000117:3349..8527+ (Clytia hemisphaerica)
atGGCTATTTTTAGTATGAATTTCGTTTTGATTTTGTTGgcatctttttt
tatttcttcgcAGGGAATGGACATGAAGAACTGCGACGCTAAAGCTCCAA
TCCAGTTTTCAGTCACTCAATTCCCAAGTAAACTACCTCTCAAAAATAAT
GCAACTTTCCACGTATCTGCTggtattcaaataaaaaattatgttcttcc
aaagaaaatcaaaattaaagttgaTGTCTCTAAACATATGTTGTTCTGGG
TGAAATTACCTTGTATTGGGTGCGATCAATTACTGTCCTGTGACAAGTTA
CCACAACTTTGTATGGTGAAAGACTTTTGCACTGATTGCTCTTTGAACGT
CAAAAATGTCAAGATTCGAATGCCAGGagatattgaacaaaaaatacCAG
GATTTGTTCCAAATTTTGCGATTGACggTAAATACTGGCTGAAACTACGA
GTTGTCAATGCTGATAATGAGAAAGAAACGATCGCATGTGCTGAAATTAT
TACAAAATTAGACGcttaaatGGCTATTTTTAGTATGAATTTCGTTTTGA
TTTTGTTGgcatctttttttatttcttcgcAGGGAATGGACATGAAGAAC
TGCGACGCTAAAGCTCCAATCCAGTTTTCAGTCACTCAATTCCCAAGTAA
ACTACCTCTCAAAAATAATGCAACTTTCCACGTATCTGCTggtattcaaa
taaaaaattatgttcttccaaagaaaatcaaaattaaagttgaTGTCTCT
AAACATATGTTGTTCTGGGTGAAATTACCTTGTATTGGGTGCGATCAATT
ACTGTCCTGTGACAAGTTACCACAACTTTGTATGGTGAAAGACTTTTGCA
CTGATTGCTCTTTGAACGTCAAAAATGTCAAGATTCGAATGCCAGGagat
attgaacaaaaaatacCAGGATTTGTTCCAAATTTTGCGATTGACggTAA
ATACTGGCTGAAACTACGAGTTGTCAATGCTGATAATGAGAAAGAAACGA
TCGCATGTGCTGAAATTATTACAAAATTAGACGcttaaatGGCTATTTTT
AGTATGAATTTCGTTTTGATTTTGTTGgcatctttttttatttcttcgcA
GGGAATGGACATGAAGAACTGCGACGCTAAAGCTCCAATCCAGTTTTCAG
TCACTCAATTCCCAAGTAAACTACCTCTCAAAAATAATGCAACTTTCCAC
GTATCTGCTggtattcaaataaaaaattatgttcttccaaagaaaatcaa
aattaaagttgaTGTCTCTAAACATATGTTGTTCTGGGTGAAATTACCTT
GTATTGGGTGCGATCAATTACTGTCCTGTGACAAGTTACCACAACTTTGT
ATGGTGAAAGACTTTTGCACTGATTGCTCTTTGAACGTCAAAAATGTCAA
GATTCGAATGCCAGGagatattgaacaaaaaatacCAGGATTTGTTCCAA
ATTTTGCGATTGACggTAAATACTGGCTGAAACTACGAGTTGTCAATGCT
GATAATGAGAAAGAAACGATCGCATGTGCTGAAATTATTACAAAATTAGA
CGcttaaatGGCTATTTTTAGTATGAATTTCGTTTTGATTTTGTTGgcat
ctttttttatttcttcgcAGGGAATGGACATGAAGAACTGCGACGCTAAA
GCTCCAATCCAGTTTTCAGTCACTCAATTCCCAAGTAAACTACCTCTCAA
AAATAATGCAACTTTCCACGTATCTGCTggtattcaaataaaaaattatg
ttcttccaaagaaaatcaaaattaaagttgaTGTCTCTAAACATATGTTG
TTCTGGGTGAAATTACCTTGTATTGGGTGCGATCAATTACTGTCCTGTGA
CAAGTTACCACAACTTTGTATGGTGAAAGACTTTTGCACTGATTGCTCTT
TGAACGTCAAAAATGTCAAGATTCGAATGCCAGGagatattgaacaaaaa
atacCAGGATTTGTTCCAAATTTTGCGATTGACggTAAATACTGGCTGAA
ACTACGAGTTGTCAATGCTGATAATGAGAAAGAAACGATCGCATGTGCTG
AAATTATTACAAAATTAGACGcttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010776-exon-sc0000117-1491911889:3349..3543 | TCONS_00010776-exon-sc0000117-1491911889:3349..3543 | Clytia hemisphaerica | exon |
| TCONS_00010776-exon-sc0000117-1510915933:3349..3543 | TCONS_00010776-exon-sc0000117-1510915933:3349..3543 | Clytia hemisphaerica | exon |
| TCONS_00010776-exon-sc0000117-1575043694:3349..3543 | TCONS_00010776-exon-sc0000117-1575043694:3349..3543 | Clytia hemisphaerica | exon |
| TCONS_00010776-exon-sc0000117-1491911889:7399..7585 | TCONS_00010776-exon-sc0000117-1491911889:7399..7585 | Clytia hemisphaerica | exon |
| TCONS_00010776-exon-sc0000117-1510915933:7399..7585 | TCONS_00010776-exon-sc0000117-1510915933:7399..7585 | Clytia hemisphaerica | exon |
| TCONS_00010776-exon-sc0000117-1575043694:7399..7585 | TCONS_00010776-exon-sc0000117-1575043694:7399..7585 | Clytia hemisphaerica | exon |
| TCONS_00010776-exon-sc0000117-1491911889:7956..8109 | TCONS_00010776-exon-sc0000117-1491911889:7956..8109 | Clytia hemisphaerica | exon |
| TCONS_00010776-exon-sc0000117-1510915933:7956..8109 | TCONS_00010776-exon-sc0000117-1510915933:7956..8109 | Clytia hemisphaerica | exon |
| TCONS_00010776-exon-sc0000117-1575043694:7956..8109 | TCONS_00010776-exon-sc0000117-1575043694:7956..8109 | Clytia hemisphaerica | exon |
| TCONS_00010776-exon-sc0000117-1491911889:8407..8527 | TCONS_00010776-exon-sc0000117-1491911889:8407..8527 | Clytia hemisphaerica | exon |
| TCONS_00010776-exon-sc0000117-1510915933:8407..8527 | TCONS_00010776-exon-sc0000117-1510915933:8407..8527 | Clytia hemisphaerica | exon |
| TCONS_00010776-exon-sc0000117-1575043694:8407..8527 | TCONS_00010776-exon-sc0000117-1575043694:8407..8527 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000117 | supercontig | sc0000117:3349..8527 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003172 | ML_dom |
Blast
The following BLAST results are available for this feature:
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