TCONS_00010750 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010750
Unique NameTCONS_00010750
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length943

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010750 ID=TCONS_00010750|Name=TCONS_00010750|organism=Clytia hemisphaerica|type=transcript|length=943bp
TCTCAAGCGAAAATTGATCGAGAAAGGAAGGGAACTTCTGGTTTCATCTT
CAGCATTTAGAGCAATCTGCCGCAGAAGGTCAAGAAAAAATAAATCGAGA
TTAAAATCACTCTCATGAGAagctttgaaataaaaattactcTCTCAAAT
TTAAGATGAATAGGCACTTTTTCTCCAGGTTCGATTTTAATTAAAGACGT
TTGGGCCGGCCGTCAAAAAAGGAAAGGGagcaaaaaatccaaaatgcttT
AGAGGCCATAAGAGCTTGCTTCACAATAACCCTAGCTGCGAAAGACTTTT
CAATTCAAAGGTCTACATTGATTGGGAGAAACAGTGTTGTGAACAGTTCT
GGAGATAGAGGAACACCAACGATACTACTCACACTTACCAACACGTCAAA
AAGGCGTTTGTCGAGTAAAAAAATTCGAACATCGACCTTTGAGAATTTGC
AGcaaatttattaaatttttgtgCTCCAAAAGCCAACCGAGCGAAGTGAA
GGCTCGAAAAtatttatgaaagctcaaaaaaaatatttctgattTCTTCT
ACATTTGATTTTCATATAAGTAGATACGCTACGATaatttttacacccct
gtgcCCTATGGAACATTTTCTCTCAATGGGGATGAAGTTTCCTACGTAGA
TCCCGATTGGGTTTAAAAATCTATTTGTTCAAGCTCGAAATTTCGGGATT
GGCAAACTGCCCGCTTTGTTTAAATTATTGAGCAGACAGGGAAATCAATT
CTAAAGCTATTATGTATGGGATACCTTatgatttgaattttaaacGACTT
TTGATGAAGGGAATCATTTCTTGAATTTTAAAGACGAGAATGGCCAGATT
CAAACCTGTGCTTTCCCCGcgtaagaaaaagtgaaacattcATTATACAT
GGATGAAATGTATAATTGAATTTCAAGAGAAATATCCAtactt
Run BLAST on NCBI

transcript from alignment at sc0000109:69769..70711

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010750 ID=TCONS_00010750|Name=TCONS_00010750|organism=Clytia hemisphaerica|type=transcript|length=943bp|location=Sequence derived from alignment at sc0000109:69769..70711 (Clytia hemisphaerica)
aagtaTGGATATTTCTCTTGAAATTCAATTATACATTTCATCCATGTATA ATgaatgtttcactttttcttacgCGGGGAAAGCACAGGTTTGAATCTGG CCATTCTCGTCTTTAAAATTCAAGAAATGATTCCCTTCATCAAAAGTCgt ttaaaattcaaatcatAAGGTATCCCATACATAATAGCTTTAGAATTGAT TTCCCTGTCTGCTCAATAATTTAAACAAAGCGGGCAGTTTGCCAATCCCG AAATTTCGAGCTTGAACAAATAGATTTTTAAACCCAATCGGGATCTACGT AGGAAACTTCATCCCCATTGAGAGAAAATGTTCCATAGGgcacaggggtg taaaaattATCGTAGCGTATCTACTTATATGAAAATCAAATGTAGAAGAa atcagaaatattttttttgagctttcataaataTTTTCGAGCCTTCACTT CGCTCGGTTGGCTTTTGGAGcacaaaaatttaataaatttgCTGCAAATT CTCAAAGGTCGATGTTCGAATTTTTTTACTCGACAAACGCCTTTTTGACG TGTTGGTAAGTGTGAGTAGTATCGTTGGTGTTCCTCTATCTCCAGAACTG TTCACAACACTGTTTCTCCCAATCAATGTAGACCTTTGAATTGAAAAGTC TTTCGCAGCTAGGGTTATTGTGAAGCAAGCTCTTATGGCCTCTAaagcat tttggattttttgctCCCTTTCCTTTTTTGACGGCCGGCCCAAACGTCTT TAATTAAAATCGAACCTGGAGAAAAAGTGCCTATTCATCTTAAATTTGAG AgagtaatttttatttcaaagctTCTCATGAGAGTGATTTTAATCTCGAT TTATTTTTTCTTGACCTTCTGCGGCAGATTGCTCTAAATGCTGAAGATGA AACCAGAAGTTCCCTTCCTTTCTCGATCAATTTTCGCTTGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006024XLOC_006024Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010750-exon-sc0000109-1491911889:69769..70711TCONS_00010750-exon-sc0000109-1491911889:69769..70711Clytia hemisphaericaexon
TCONS_00010750-exon-sc0000109-1510915933:69769..70711TCONS_00010750-exon-sc0000109-1510915933:69769..70711Clytia hemisphaericaexon
TCONS_00010750-exon-sc0000109-1575043694:69769..70711TCONS_00010750-exon-sc0000109-1575043694:69769..70711Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000109supercontigsc0000109:69769..70711 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.35337 0.659877 0.38309 0.107084 2.54211 1.39071 1.80212 2.50159 1.059 0.857679 2.44848 0.708196 1.47871 0.734446 1.04295 1.29597 1.08854 0.892577 1.13038 1.34416 1.91605 0.888991 0.720456 0.906922 2.64664 3.61257 1.65692 1.20245 1.3412 1.03851
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010750 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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