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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010735 ID=TCONS_00010735|Name=TCONS_00010735|organism=Clytia hemisphaerica|type=transcript|length=1653bpRun BLAST on NCBI transcript from alignment at sc0000109:157676..177663- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010735 ID=TCONS_00010735|Name=TCONS_00010735|organism=Clytia hemisphaerica|type=transcript|length=19988bp|location=Sequence derived from alignment at sc0000109:157676..177663- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00010735 vs. Swiss-Prot (Human)
Match: TRPM3 (Transient receptor potential cation channel subfamily M member 3 OS=Homo sapiens GN=TRPM3 PE=2 SV=4) HSP 1 Score: 189.889 bits (481), Expect = 1.183e-50 Identity = 128/399 (32.08%), Postives = 226/399 (56.64%), Query Frame = 3
Query: 225 SYTNQDETLSAQRDKELSFCGKMYLFYAKTPAVKFYLNLVSYIAFLCIYAYVAIKEKVPGSTPSVTEYIVLAFVVSFTTEEIHQLVQTEYSTFRAKIEDYLSNYWNLVDIVAIITYFIGFALRWFSST-TNVGHLILALNAGIWILRLLHVFYMHRIMGPYVVMIYRMFIDMMYFLTILFVFMVAYGVCSTAILVP-QKASWKMFIDVIFHPYYNIYGELFIDR-DPEDSQT-TRFGTDVIN-SYAEPISWVMXXXXXX---XXXXXXXXXXXXXFGDTFSSVKDNSAQIWKYQRYGLIREYAARSALIPPFILFVHIYLFLRWI---WDXXXXXXHEEGGGVRLTTKLDEYEKEEMNEFESDSVASYVRSVRSQAND--NTTENESVQELLERVKHLT 1382
S +DE + + + K+Y FY P VKF+ ++YI +L ++ Y+ + + PS E+IV++++ + E++ +++ +E K++ +L YWN+ D++AI+ + +G LR + G +I +N W +RLL +F +++ +GPYV+MI +M IDMMYF+ I+ V ++++GV AIL P ++ SWK+ ++ + PY+ IYGE+F D+ DP Q TR +I + +W++ A+ +AN+LL+NLLIA+F +TF VK S Q+WK+QRY LI + R L PP I+F H+ + + + W E G++L DE +K +++FE + Y R + +D N++ +E ++ ERV++++
Sbjct: 865 SSRKKDEEEVQSKHRLIPLGRKIYEFY-NAPIVKFWFYTLAYIGYLMLFNYIVLVKM--ERWPSTQEWIVISYIFTLGIEKMREILMSEPGKLLQKVKVWLQEYWNVTDLIAILLFSVGMILRLQDQPFRSDGRVIYCVNIIYWYIRLLDIFGVNKYLGPYVMMIGKMMIDMMYFVIIMLVVLMSFGVARQAILFPNEEPSWKLAKNIFYMPYWMIYGEVFADQIDPPCGQNETREDGKIIQLPPCKTGAWIVPAIMACYLLVANILLVNLLIAVFNNTFFEVKSISNQVWKFQRYQLIMTFHERPVLPPPLIIFSHMTMIFQHLCCRWRKHESDPDERDYGLKLFITDDELKK--VHDFEEQCIEEYFR----EKDDRFNSSNDERIRVTSERVENMS 1254 The following BLAST results are available for this feature:
BLAST of TCONS_00010735 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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