TCONS_00010726 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010726
Unique NameTCONS_00010726
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2444

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010726 ID=TCONS_00010726|Name=TCONS_00010726|organism=Clytia hemisphaerica|type=transcript|length=2444bp
gaaaaaatagcatttggcagaactaattttcgcgtgaAAATGAGTTCCTT
AAGGTAATCAAAGAGATATACCTCTATCAGTTTGGTCTGCCGTGGCAACA
GGTGTAATTGTTTCTTTAGTTGGTAGATTATATTTCTGGAGCATGTTCAT
CACCATTCTTTGAATCTCATCTTTTTGTTGAGATGGAACAGATTCTGCAA
TATTGGTGTTAGCTTGTGAAACTGCTAACTGGCTCATGATCTGCTGAACA
ATTTCGTTCTTCAATGTTTCTTCATTAGGAAGGGTAGGTTGGTTCTCTTT
AGCAATGGAAAGGTCTGCTTCAGCAATAGCTTGAGAGACCAAAGAACTTG
CTTGTTCCTCAACAAACGAAGAAACGTCTACAGGCAGTGTCTCTTTAGTG
AAGGTCTTTTCCATAGTTTTCGACGTCTTTGTGGGCTCTTCTACGAGAAG
AGTTTCTTTAGTGAAGTTCATTTCCAACGTTTTTGACGTCTTCTCCATCT
TTGAGGGCTCTTCAACGACAAAAGTTTTGTTTGTAATTGGCACCTCGTTT
GCTCCAGACTNTTCCAACGTTTTTGACGTCTTCTCCATCTTTGAGGGCTC
TTCAACGACAAAAGTTTTGTTTGTAACTGGCACCTCGTTTGCTCCAGACT
GTATAAACTGGTCATCAATATTTTCAGCAGATCCAGGAGTCTCAAGCGAT
TGACTGGTGTGATTTTGGGTTGCTTTTTGCTTAGTCTCAGTGACAACAAA
TGTCTCATTGGATGTGGTCTCCTTAGTCGATAGTGGAGGAGCTTTTGGTG
TGTTTTCAGTTGACACCAAGCCATCTGAAGGAAAAACCATCATTGAACTA
TTAGCAATGGGTGGTTTAAACACAAGAGTTTGTTCAAAGTTGGTTGAATC
ATCAATGCATTTTTCGTTGCCAGCCAGAATCACATCTTGGATTGTCAACC
TTCGGTCTTTGCTCAGAGTGTACGTTTTTCTGCGATTCTGTGGATCCTTC
TTCTCATCAGCGACTTTGAATTGGCTTTGTGGGTTAGTATCCTTATTTTG
AATTGAAGATATGGTGTCTGTGTTGAGTATCTGAGGTGGTGATCCTCCAG
GCAATGTGTTGATAGGGAGAGGTTTGGTCAGAGACGAGAGCTTGGTCTGG
ACTGATGTGTTTGTATCCTCTTTTTGTTCCATCAGCAATTTAAGAGGGTT
GACTTTTAGTGTGGCAGTTGTCGGGATACAAAGTTGTGGTGATTGACTGC
TTGCCACCAGCCATTGGCTGGAAGGTGCTATTGAGTTTTTCTTGGNAGAC
GTTTGGTTAAGCCTTGGAAGTATGGTTGACACTGAGGGTAGTTTGACCGG
TTCAGCCTCATTTGATAACTTTATCCTTTTCATGGGTACAGATGCGAAAG
CGGAGGTTTCACCTAACGAAATTCCAGTCGACTTGGCTTCACTGACCGGT
GCTGTTTCTGGTCTTTTCTTTGAAACGCTTCGTTTTGGTGTTACCAAGAT
GACATTTTGTGATTGTGAAATTGAGTTGATGTCTTCATTAGGGGCAAGCT
TATCATGTGATAAAGATGGTGTTTCATTTGATATGGATGTGGCAGTCTCC
TTGGCGTTTCTTCTGGGTGTGACCAAGATAGGAGTCTGAGTTGCTGGAAT
AGAGATTGTTTTAGTTGGTGAATCACCAAGTGCGATTTTAGTTATATTGC
TGATGTTTGGTGATTTTCCAAAAGTTGAACAATAGTCTCTGTAGCTGCTT
ACTGGAGTTGCGGAGAATCCTTTTTGTATTTGAGCTTCCAAgctattttt
tgttttactgGATGGGCTGATAGCAGCAGACATGTTGAGTTGATTTAACA
TCAGTTCTCTTTGGTTCTCATCATCTGTAATATTCATTGAAGCTTCGCTT
AATATGGTAATGTTATTAAGTTCAAGAGCGATCGCCCCTGGAGGTGGGTC
ATCGCTTTCTGATGGTGTCTTATGACTTATGAGCTTTGCAAGAAAGTCTT
TACCAGAGACTAAGGAGGATTCCGGTGGTTTATTACTCTGAAGGTAATTG
TCTTTGGTTGATTTAAAATTGCTCAAGAAGTCAGCAGAAGAGATTTTGGT
TTCTTTTTCAGCTGTGGTACGGTCTAGAGGGAAAGTCACAAATGTTTCAG
AAGCCTCGTCCATAACGTCATAGTTATTGAGGATAGTTTTATTGTTGTTT
ACATGTGGTGATTCACTGTGTAGAGATGGCATCCCAAGAGTCGTGTCCAT
TCCATTTTTTGTAGTTGGCTTGTCATcagaaaataatttaaagaaatttt
gaattttttgagtttCATTCAAATCATCCCCACTGGGTGAAAGTTCTGTT
AGTCTGGTTAGGTCCATGTCGTGTTCAGCGTGAGACGTCTTATCCAAGAA
TTCAGTCTATGAGAAAAAACAATAATAAGGAGATAAAAATGAAC
Run BLAST on NCBI

transcript from alignment at sc0000109:4455..7096-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010726 ID=TCONS_00010726|Name=TCONS_00010726|organism=Clytia hemisphaerica|type=transcript|length=2642bp|location=Sequence derived from alignment at sc0000109:4455..7096- (Clytia hemisphaerica)
GAAAAAATAGCATTTGGCAGAACTAATTTTCGCGTGAAAATGAGTTCCTT
AAGGTAATCAAAGAGATATACCTCTATCAGTTTGGTCTGCCGTGGCAACA
GGTGTAATTGTTTCTTTAGTTGGTAGATTATATTTCTGGAGCATGTTCAT
CACCATTCTTTGAATCTCATCTTTTTGTTGAGATGGAACAGATTCTGCAA
TATTGGTGTTAGCTTGTGAAACTGCTAACTGGCTCATGATCTGCTGAACA
ATTTCGTTCTTCAATGTTTCTTCATTAGGAAGGGTAGGTTGGTTCTCTTT
AGCAATGGAAAGGTCTGCTTCAGCAATAGCTTGAGAGACCAAAGAACTTG
CTTGTTCCTCAACAAACGAAGAAACGTCTACAGGCAGTGTCTCTTTAGTG
AAGGTCTTTTCCATAGTTTTCGACGTCTTTGTGGGCTCTTCTACGAGAAG
AGTTTCTTTAGTGAAGTTCATTTCCAACGTTTTTGACGTCTTCTCCATCT
TTGAGGGCTCTTCAACGACAAAAGTTTTGTTTGTAATTGGCACCTCGTTT
GCTCCAGACTNTTCCAACGTTTTTGACGTCTTCTCCATCTTTGAGGGCTC
TTCAACGACAAAAGTTTTGTTTGTAACTGGCACCTCGTTTGCTCCAGACT
GTATAAACTGGTCATCAATATTTTCAGCAGATCCAGGAGTCTCAAGCGAT
TGACTGGTGTGATTTTGGGTTGCTTTTTGCTTAGTCTCAGTGACAACAAA
TGTCTCATTGGATGTGGTCTCCTTAGTCGATAGTGGAGGAGCTTTTGGTG
TGTTTTCAGTTGACACCAAGCCATCTGAAGGAAAAACCATCATTGAACTA
TTAGCAATGGGTGGTTTAAACACAAGAGTTTGTTCAAAGTTGGTTGAATC
ATCAATGCATTTTTCGTTGCCAGCCAGAATCACATCTTGGATTGTCAACC
TTCGGTCTTTGCTCAGAGTGTACGTTTTTCTGCGATTCTGTGGATCCTTC
TTCTCATCAGCGACTTTGAATTGGCTTTGTGGGTTAGTATCCTTATTTTG
AATTGAAGATATGGTGTCTGTGTTGAGTATCTGAGGTGGTGATCCTCCAG
GCAATGTGTTGATAGGGAGAGGTTTGGTCAGAGACGAGAGCTTGGTCTGG
ACTGATGTGTTTGTATCCTCTTTTTGTTCCATCAGCAATTTAAGAGGGTT
GACTTTTAGTGTGGCAGTTGTCGGGATACAAAGTTGTGGTGATTGACTGC
TTGCCACCAGCCATTGGCTGGAAGGTGCTATTGAGTTTTTCTTGGNAGGT
AGATTTGATGAAAATTGTTTTGGAGGAGACGCCATTTTGATATCATTGAT
TGTTGGATTTTCATCCTCTTTTTGTTCCATCAGCAATTTAAGAGGGTTGG
CTTTTGGTGTGGCAGTTGTCGGGATACAAAGTTGTGGTGATTGACTGCTT
GCCACCAGCTCTTGGCTGGAAGGTGCTATTGAGTTTTTCTTGGGAGACGT
TTGGTTAAGCCTTGGAAGTATGGTTGACACTGAGGGTAGTTTGACCGGTT
CAGCCTCATTTGATAACTTTATCCTTTTCATGGGTACAGATGCGAAAGCG
GAGGTTTCACCTAACGAAATTCCAGTCGACTTGGCTTCACTGACCGGTGC
TGTTTCTGGTCTTTTCTTTGAAACGCTTCGTTTTGGTGTTACCAAGATGA
CATTTTGTGATTGTGAAATTGAGTTGATGTCTTCATTAGGGGCAAGCTTA
TCATGTGATAAAGATGGTGTTTCATTTGATATGGATGTGGCAGTCTCCTT
GGCGTTTCTTCTGGGTGTGACCAAGATAGGAGTCTGAGTTGCTGGAATAG
AGATTGTTTTAGTTGGTGAATCACCAAGTGCGATTTTAGTTATATTGCTG
ATGTTTGGTGATTTTCCAAAAGTTGAACAATAGTCTCTGTAGCTGCTTAC
TGGAGTTGCGGAGAATCCTTTTTGTATTTGAGCTTCCAAGCTATTTTTTG
TTTTACTGGATGGGCTGATAGCAGCAGACATGTTGAGTTGATTTAACATC
AGTTCTCTTTGGTTCTCATCATCTGTAATATTCATTGAAGCTTCGCTTAA
TATGGTAATGTTATTAAGTTCAAGAGCGATCGCCCCTGGAGGTGGGTCAT
CGCTTTCTGATGGTGTCTTATGACTTATGAGCTTTGCAAGAAAGTCTTTA
CCAGAGACTAAGGAGGATTCCGGTGGTTTATTACTCTGAAGGTAATTGTC
TTTGGTTGATTTAAAATTGCTCAAGAAGTCAGCAGAAGAGATTTTGGTTT
CTTTTTCAGCTGTGGTACGGTCTAGAGGGAAAGTCACAAATGTTTCAGAA
GCCTCGTCCATAACGTCATAGTTATTGAGGATAGTTTTATTGTTGTTTAC
ATGTGGTGATTCACTGTGTAGAGATGGCATCCCAAGAGTCGTGTCCATTC
CATTTTTTGTAGTTGGCTTGTCATCAGAAAATAATTTAAAGAAATTTTGA
ATTTTTTGAGTTTCATTCAAATCATCCCCACTGGGTGAAAGTTCTGTTAG
TCTGGTTAGGTCCATGTCGTGTTCAGCGTGAGACGTCTTATCCAAGAATT
CAGTCTATGAGAAAAAACAATAATAAGGAGATAAAAATGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006012XLOC_006012Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010726-exon-sc0000109-1575043694:5799..7096TCONS_00010726-exon-sc0000109-1575043694:5799..7096Clytia hemisphaericaexon
TCONS_00010726-exon-sc0000109-1575043694:4455..5600TCONS_00010726-exon-sc0000109-1575043694:4455..5600Clytia hemisphaericaexon
TCONS_00010726-exon-sc0000109-1510915933:5799..7096TCONS_00010726-exon-sc0000109-1510915933:5799..7096Clytia hemisphaericaexon
TCONS_00010726-exon-sc0000109-1510915933:4455..5600TCONS_00010726-exon-sc0000109-1510915933:4455..5600Clytia hemisphaericaexon
TCONS_00010726-exon-sc0000109-1491911889:5799..7096TCONS_00010726-exon-sc0000109-1491911889:5799..7096Clytia hemisphaericaexon
TCONS_00010726-exon-sc0000109-1491911889:4455..5600TCONS_00010726-exon-sc0000109-1491911889:4455..5600Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000109supercontigsc0000109:4455..7096 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.25477e-05	0	0.698457	0	0	0	3.62558e-07	2.79059e-05	1.8121e-10	1.33779e-06	0.637987	4.06712e-10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010726 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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