TCONS_00010711 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010711
Unique NameTCONS_00010711
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length891

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010711 ID=TCONS_00010711|Name=TCONS_00010711|organism=Clytia hemisphaerica|type=transcript|length=891bp
AATTGTTAAAAGGTTGGAAACGGAGACATGatgaagaAAGCCAATCACCA
TTTTCACAATCCAGCTTTGGGGCAGCATCTAATAACGAGGTGGCCATCCA
CAGTCAACAACCATTGAATCATCTCATGTTTATTTCAATGTTGGAACACA
TTTGCGTCTTATACACACAAGATGAAAATGCTAGTGATGCACTTTTCAAA
AatGTTTGTGAAAAGCTCAAAAGTGGAATGttGATACCAGACCTTGCTTA
TTTGGACGACTTCAAAGCAGTAAGAATGAAATATCAAAGTGCACTCAAAA
GTCTCATGGAAGGTTCTGTTCAAACGTTACAGcccaaatttgaaCTACTC
AAAACTAAAGAACATCTCGCATTCAACAGTTCAGCTGTCAGTGGGTTCCA
TACACAGTCATTGTATAATGAAATGTTCTCCATGGAGGAACATATTGCAT
CAGGAGGCTTCGGAAAAGTTGTCAAAGCACAAAATAAACTGGACCATAAG
TTTTATGCCATCAAGAAAATCCCACTCGTTGATACAGATGTCAAAAAGAT
TCTACAGacattAAGGGAGGTGCAGATCTTTTCAAATTTGGAACACACAA
ATATTGTGCGTTACCATTCTTCATGGTTAGAGCATGGTGTCGAAACATTT
CTTCAAAAAGCAAATAATAGCTCCGACACATTCACAATTCTCGTCATCAA
ATTCGGTCAAATTGGTTCTATATCGGCATGTTTGGTCGATACACTTTGAT
GGGAGATAGGTATTTTCATAACTTTTCAACTCTAAGACGACAGCTTTCCA
TTCGCCTTCGACTTTCACCCATATCACAATGTCGGGACGGAGTTTTCTGC
CGTTAGAATTATCAGTAATGGTTGTTTGTGATTTTACGTGG
Run BLAST on NCBI

transcript from alignment at sc0000109:415525..432546+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010711 ID=TCONS_00010711|Name=TCONS_00010711|organism=Clytia hemisphaerica|type=transcript|length=17022bp|location=Sequence derived from alignment at sc0000109:415525..432546+ (Clytia hemisphaerica)
AATTGTTAAAAGGTTGGAAACGGAGACATGGTAAGCATTCTTCAGGAAAA
AAAATAGAACAGGCAAAGAAAGTGCTGCATTCTTCTTTCTTGATAGGAAA
ACTTACCTTTTTGACTGTTTGATTTTTAGTCAGTCTAATAATGAATCCAT
TAGGTTTAcagttttccaattttatcaaatttcaatcatattcaataact
ttttttcattgCCTTCATTCCATAAAATTATGAATCACGAATTTCATTGT
AAGAAATCAAATGataccgtgaagttgggtaacttgcaccaggtcagtgg
agggaaacttgcatagccatcaaacaGTGTaaacctaaagctctaaacca
gcatctaataacatgaaaaccagaatatgattcttcaatgggaatcaaaa
ctataaagtgcacttacaaacatcaatttgtcagaNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNtcgagaacgctccgcgaactcctgcgcgggtgaaaaacttca
atctgtcaatcattttctcaagcgaagagtacgcaaagcgattctagctt
tacgatagtgccgcgggtcatcaatggatagtattcaattgtcattatcc
ctttattttcattcctagaacttttgcaaaaaaaaggaaaaatagaaaag
ttgtattttttactgctccattcatatactgaatttgaaagatcttctat
gtggcgtttttttgcaaacttcaaaaaactgatttttgtcccgcctttgc
gggactttggcttaagtgcttaaGTGNgagtgcagcatagggtacaaagt
ctaAACAtacgtttcccgtaatttttgtgtgaagagttaggtctacactg
tcaaatgactgaccaatcaaaccAGACGTCTGCACTCGATaggatcatcg
gaacggctcaaTGACGGATttatatgtgatcgatggattacttaacgatc
cggatgggagatcgatagaggatcgatactccagattttttaagcttatg
attagttatcgattatttatcgatctatcatcgatcttttatcgatctcg
ATTTActatcgataacaaatcgattaacaatcaatgaccaatcgattaac
gatcgatgacgaatcgattaacgatcgatgacgaatcaattaacgatcga
tgacgaatcgatatactcgattgaaaggtgaaatactagctcgataatgg
atcaacgaaggatcgatactcaagatcttccatcgatctcccatccggat
cgttaaataatccatcaatcacatatcgatccgtcatcaagctgttccga
tgatcgatcctatcgagcgcggacgtctggatcaaagcagcaaaatttca
aaacaaatgaactacgcagctccgctcgcagctctactctaccatttttt
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaacgtacag
accaaaataaacgtacaggggagagaataaaattggaattaataaacgta
caggctgaaataaacgtacaggcgagaaatcagagctaaaataaatacac
gtacaggctaaaataaacgtacagggaaaAATCtactatttttcaaaagt
agaacaTCCAGGTCGAAATGACTGACTAAGTATAGGTATATCTCTTGTTA
TAGATCAATGACAAGTACTAAATaagcaaaacgttcgaatttactCGTGT
AACACTCGAAATTTCCCACGATACGTTCGAATGTTTGTAATTAACGGCCT
TTCTACATAtcttacttgaacaaaaaataacaagttTTTGCAGTATGAAT
GGGCGATATtgggtgaaaataaataaacatacagtagggaataaacgtac
aggcaggaaaatttttcagaataaataaacgtacagttcctaataaggtg
cgtacaggcgggaaatttgacacgaaaaaaaataaacgtacatgtacgtt
tattaggcacccgagagtactcggcatcggtgcgaaagagaaatcgtgta
ttttttaatacgtcgTTCATTATcacaaatcaaatgactttggaggttca
gtgaaatggtggtcgaattgctgtcccatgttttgtcagatagtcccaag
ttcagtcaaaaaaatattagatttgattctttttttggtcgtatttctaa
attttacgataaaaagaactatttacaaattattttctttaacaggcgtt
gaatcgacattgacatatttaatgatgtcataatcaatgctgTGCATATT
TTTTCAGCgctgtgcatattttgtcaacatccttttcattggataaatac
cactaaaatatacaagagaagtaaacataaatttatcgcccgcgagcacg
gcttaaccaagtgcacctctcttattcattatctaagaattggaacgggc
aaagattaccacgcggacaaaggttatttgaaaatatttttagttataat
ccaaggtagaacaaactaaacatagaaagggggtattttttagtgctcta
tacgatgatcggtattttttttgaattctatgtttagatttttctaccca
gcacCGTTATGTACGCACGCcttgttgctaagacctttgatggaaatcga
aagtgaaaccaaaataatttagcgcacACAGCCGTTCAcataatatcgat
aaagtgaaaggagTTCCTGACtgaagttagagcagttgatggtaactttg
tattttaatgaccagccaggtcattcatttgagggctatgcatattagcc
tccaatgatgcaagttacctgatctcacggtagGTGTTCGATCACCAAAC
CTGATCGAACAGTATATCGAACTTTACTGGAATATCTTCAGTTCGATTAA
AGTTTGATCACTTTATCGCAGTTAGATTATTTAAAGTTCGATCAgtgttt
ttgtagctcaaatggttccagTTATTGCTAGTGCAACAACTTTTGCCTAA
ACAATCCCCAACAATCATTGGATTAGCAGAAAAGAGTTGTTCATGCGCTC
TGAGAATGATTTGTGATCGAAAACCATAAATTGAACACGttgaacatcaa
tcgaactaatcgaactttaccgGAATTTCTCGGTTCGATGAGTGTTAGAT
TTAGTTTGGTAATCGAACACCTACCGTACGATTGAGTTTGATTtcttcgg
taatcgaacagtttGATTGACATCGCCTGGCAGGGTATGCTTTaactcct
atatcaagattacgggatttggaGTGCAGGCCAATTTTACTAtaattttc
agtggtttcactttcgatttcaagccaacaacttagcaacagggtgctcg
cccatagttacaggggtttgtgcaaaagaaccaaacatagaaagttttcc
aaatccctatttcgattgaaccaataataaatgaaacttttccatgtttc
acttttttgcaccaattcttcataATGAAAATAtctaagatttaaagttc
tcctttatttaatgattttttacggcactttgttgacaatctaattctcg
catcaaattcccactttcttcagtaaattgaagatcagaaaaaacctaag
ccttaggatcacggattgaaacaaataggaagggtgggattttacagtcG
TCTCtagtgcaaggcactgagaggccacaggtgccaaaaagaagggccat
gTGAAATgcggcaatctcattggtggaaatttgataaacagctgcgaagg
agcgctgggaagcaatctgtagaagagaccactttcgtttttgttgcaga
tttcgatataaacttctctcacagggattacttgtcaatatGTTGTGtga
acttgtcagcattgtattgttgtaaagggaaagataaaagaggtaagact
agcctagtttctaatcctgataaaggagtttaagtttagactgatagaca
aaagatttattCCTCTCTAgtcactaagcaaagaaaaatagttttaatcA
GTGATTCCCAAACTTCCCATTATTCCTATCTTTATATGATATCTGATGAT
TCAGACAACAAAGTCAAGTACTCTCTGGTACCTAATAGCCCCcctccgct
tattaagttttgagattttttccaaacctcccgcttattccaaactcccc
ggctattaggtacccaagagtagcTCCTCAAATGAAGAACAATCCGAGGA
AGAAGTCATTCTTCCGAGGAAGAAGTCATTCTTCCATACTAGCTAGATCA
ATACCTTCAATCGAGAATTTACAAGGCAGAAAATAGAAGAGGTATTTCGG
ACCCCATTGAATGTTTaatcagttaggaacatttggcgagttcctgtacg
cggccgcaatcaaaaaaatcataaccacactcataaaaaaattgtgtttg
tgtctttttttaccGNNNAAAATTTCctcaactttcaacaatgataaaac
acacctatttaaaaaaaaattaaccagcgcatttttcatctttctacttc
ttcatcttccatgaagctctcaaagttaaatagaattaagcacataagat
attcttataattgtgaaatgttGTTCGCGTTTTCgctacggtggagtgca
tgacgtaactcgcgcggcaacaaactcgccttctgttggctggTCATATT
GgccgttttggcgttaccaccctcgaagcagtGGGCGCCTTCGTCATTcc
gcaactctgtccaccattttaaatgagttaacaatggatccaaaagggcg
ccctcatcaagaaagatcatttgctttggtctccggctttgggaagcagt
aatgttttcgattgttttcgatggaaaatagtaagaaacttaagtttaca
agtgtcattcagtttttgctggctgatagaatggcaggatcctggatggt
ttccctaactgttaATCGGTATGATATCTTCTTTTTACTCACCGAGTTCA
GGAACTCAAATACAGTAGGCATTTTTGCAAGTTGATtaggctgggcttaa
aaaaattgttggtttgccgtcacccacCCTTAGATTTTCGAGGTGGGTCG
GTCAGTcggaacttttttttattttggcgatttttaaaatttttatccat
ggaagggttaacagtttgtttacatttaggtaattttgaataaaaaacag
aagtgctagcaggaaatttacgattcttatgcttgagacaaacaagatac
gagttttgattttttattgtttgaagtttttaaaggaaagaaaatcttct
ttaaaatagcaataaattttttgggtcagcaggtttcgaggtagggttgg
tcgggtgacggcaaaccaacaattttttaagtccagccttatgaaatgaa
agaaacgtaAGAATTTATCAGTACCCATTTAGTAGAAAGTTATACACCTT
ACACAATTTTTCTCCTTGAATATTTCATCCTCGCTGGTTTCAAATCTGTG
TTTAGACTTTTGTAAATGTAGATCAAAAGTTCAGCCCATGGAATGGAAGT
AGAGTTGTAAATACCAGTCAAACATATGACACAATTTAGCATTTATGAGT
CATCTTTAATAATATCATAATATCTTGGTTGGACAACCTCTACTTCGTAG
AGCGAATCATAGATTATATCTTTCGAAAATTCACAAGGTTAAAAATACAT
tacttaaagtttcatgcttatcgcaatcatcagatgtgtaaaaacatttt
tttaaaaaaccgtCTTATGTACAGATTTGAAGTGtggaaaaaatcgtaaa
aaaatcgtaaaaatgattaaaagcaattatgacaaattaggtgataaaaa
tgattaaaagcaATTATGACAAATATGAGTCATCTTTACGCGTCATCAAC
ATAGATTGACGGCTAAAAAGACCAATACAAAATACATCAGAAATGGTACA
AATACTAGTGTCACGTGATGAAATGTGGAAAGCCACTATGCACATATTGT
GCATTTTCAAACGAAATACGAAACCAGACAAACGAACGGGGTCTTTCAAA
CTGCCTCTGATCGAGGTGGGTTCTCCCTGTTAGGGGAGATTTATTGTTTG
ACACCGAAGTATACATGTAAACTGACGCTTATGAAGCGTGACGAATTAAA
TGAAGCAGAGACTCCGCAGAGCCAACTGCGGAGGGTTATTGTGAAATGGT
ACTGACGAAATGAAGCAGAGTCTCCGCTGAGCCAACAGCGGAGGGTAAAT
GTTAAATGGCAGAAACGAACTATGGACTGATTTAATTACAGAGACTTTAC
TACGTAGATTTTATggttatttattttattgaataattGATGCATCAAAC
TTAAACCTTGCTACTACTCGTGCTTTGAATTCTATAATACCTAACCGGTT
CTCTTCCAATAATAGCTTGGGATCCTGAACTAGTCGGGGAACAAATATAA
ATATTGCTGTTGAGGATAATTGTCGGGAGTTACTTATTGAGCCGTAGCGG
CCCGCCCGTGACACTAGGTAAAACAGTTTATTAAGATACAAAATGAGTCa
ataatagaaatagaaaactgTAGAATTATTACAAAGCAGAAGGAAAAGTA
TAACATAAATACAGAAGATACTCACTAAAGAACACTGTTTTGGAACATCA
CAAACATTTAACATTTAAACATTGCACCACAAGACTGAACAGTTATAACA
TTTACAGAATACACAGAAATTCCCGTAGGGATCATAGTACAATACAATAA
TATATAAACATTACACTATAAAAAGTAAACCTAATACACATGAGACATAA
TAAATGACATAAAGGAAACAATTATAAGAAATCTAACTACAAAAGACCAA
TTAAATACAAAGTAATAATTGTAAGAACATCAAACAGTTACACAAAAGAA
CAAACATAAAATCAATGCCAAAACGGCATTAACACTGTTAAAACGGTATC
TCAGAATGATGCAGATAAAATTTATGATTCTCTTTATTTTGTAGAAAATC
attataaataaacaaaaatcatgCACCACAATGTCTTTTGATGATCCTTT
CAATTTATCAACAAGTTTCTCTTCTTTTCAACGTGAAGACTTCAATACAG
CATCATCAGCATCTTCAGATGATTTTGTCGAATTTGAGCGATTCACAANC
GAACCTGGATTATTTTTTCGTACACGTCAATTAgagtttttctaggaaaa
ttgaaaaagaaaatattttccggccgcccgggtgagattttttttcgtca
cccgcatTTCTGGAaacaaaacaacttttttatttGGCCTCGACATAGAT
TGACGGCTAAAAAGAACAATACAAAATACATCAGAAATGGTACAAATACA
GGTAAAACAGTTTATTTAAGATACAAAATGAGTCaataatagaaatagaa
aactgTAGAATTATTACAAAGCAGAAGGAAAAGTATAACATAAATACAGA
AGATACTCACTAAAGAACACTGTGTTGGAANAGTGGAAGCCTATTGATGT
TCCCTTTTTGCTACTTtgatgggataaattttcgtggagattaaattttg
cagatgaGCCTATCCGCgaaaaaaggtaattttgaaaagattttgtgGGG
actcaaaaagtatgcaaaacaaactactttaatgggataaagttttgcgg
ggattaaatttcgcggatttcgcagattagggtgtcatccgcgaaattaa
gtcccaatggaaatttggaagggctgTCGCGGACGGGGAGGACTTGAATG
TACAATGGAATTCAGAGTGACAGTAGAACAAAGTAGACAAGAGTTTTTCA
GCTCGTGCATATTTATTTCAATCCAtccaaataataaagtaaagttacac
acaataaacaaacaaatttaaatgTCAATGATTCACCTGCGTCCAGGCGT
CGCCGCTCACTGCAGTTTATTGCGACTTGGGTTTTATTGTTAACTCTGCG
CGAGAACCCCATAACTCCGCAGTTTACTCCGTTTGATTCACCACCTGTCT
CACCCAGGCACTTCCCAACCTTACGGTCCAGTCTCTAAACGACTCTGCTT
CAGCATTCTTTGTGGATGCACATGGCAGTCAGACTGGGGTCAACGGGGTC
CAATTGTGGAACCAGGCTAACCTAGGTCTGATGGCCACGCAATCCGTGAT
TCCTCAATACGTCTTGTCCGGACAAACGCTTGCTGAAGAATGTCTGAATT
TCTATATCTGGTTGAGATATTTCTATCTCATGCATAATGCATATTTACAA
ACATTCAACAAACAAAATTCTATTTATAAATCCCTCATGACAGCAGCCGC
GGGCCCAAAACGTTTGGACCCCAAACGACTACCCCTTACTAGTTCTAACT
TtaaaataacatcaaatttttattttgacaaaatctcACAAAAAGGGTta
atatatttcaattctacccaaatatttatatatttatttcaTTCGACAAC
ACACCCATCTTTACACAGAGTATCCATTTCGTTAAATGATTTTTACTTTT
GGTAGAAGACCCAAGCATCTGATCTCATTTGAGTTCAggttacaattttt
ttcacgGTGTCCGTCTCTGCCACAGGTCCAACAGGTCAAGCCACGCTCCC
TGTTACATGGGATGATTTTACAAAAGTTCTTTTTGTGTCCAGATTCACCA
CATCTCCAACAAGTTAATGAAACATTCTCATTTGTGCCATTTTGATACTT
TAATAGGTTGATTTCAATGTCATCTTCGTCGTCATTTGCTGACTTCGGCT
TTCCATTCATCATCCGTTCTATGGCATTCAGTTTCTCCCATATCTTGGTG
AGTTCCAAAGGCTTTTCTCGCTTCAAGGACTCTTTTAGCTTGACGGCCTT
CACTGCTTCGTTGTAGGTCTTAAATTGTTTAAGACAGACAAAGTCTTGCA
AGTCAGGTCTTAATCCAGCCAATAAGAAATCGAGTTGTCGATTCTCTGGT
ACTTCAAGTTCAGTAAAGAGGAACTCTAATTCCTCAAGGTAAGTAAGTAA
GGACGAATCTCCCTGCTTGATGCTTGCGTCTTCTAATAACTTTTTCCTCT
GGGGCATCAAACATACTTTCAATTTCCATAATTGCTAAGGCAAAAGAGGT
CTTGTAGGTTCCATCCATCCGGTGGAAGAACATCTTTGGTCTTTTTTGTA
ATATGGATGGAAGAGCAGCCAGTTTTTCCTCTTCAGTCCATTTACCAAGT
TTTGTAATGTCTTCAAATTCTTTTAAGAAGGTTTTGAATGACTTCGATCC
GGTCCCATCAAAAGTAGGTAGATCTAAGTGAGTGATCTTCGGTCGGCTGA
GTTTATTTAAAGACTCTACAAACGATGTCTCTGTTAGAAATGTCTGCTGC
TGTATTGGCTTTCGGTCTTTTCGTATAAATGGTTCACAGTTACCTCCGAT
TGCTCCTGCTTGATATGGAGGGGATTCAGATTCTAAGTGTTCAACTCGAA
ATCTTAGCTGTTCAATCTCCTCACTGAGCTGTTTCCCATCGGATCGAATT
CTGTCTCGTTCACTCTCCAATAGTTCTTGGTATTCGCATGGCGCACTCTT
CCTTCTTTGGATATGTCGCTTGTCCACAAACGGTGGTGTAGTGCATCCAT
CGTAACAATTGCTACTAAACATGCTGTTCCAAATGTCCGATTGAACACCA
CAGTCACTATGGTAGTGATTGGTGGTGTNTAATTGCTACAAAACATGCTG
TTCCAAATGTCCGATTGAACACCACAGTCACTATGGTAGTGTTTCGGTGG
TGTTAGAAAGGCTCGTTACTACAGGTTCGCAGTACTTGCAGTTGATTGAT
CCATTTACAACCGCAGGCAAGTAAGGCAGAACTGTTAGTAATCACTATAA
GGTATGTTGGAAAGAGGCGTGACCTTTTTCGATGAGCTTTTCAGCTTTCT
CTCCTCATtgactttcttctcttttttttccgtTAAAATTTCTTGCATTC
GGTATTTAGCATCATTACTTGCGTCAATGATAAATTATTCAAGAAGGTAT
ATAAACGATTATTGCATCTTCTGCCTTGAATTATTGATTACTTGATGGTT
CATCGCGAGAACTTTTCGGAGTTGGCTTGATATCAATAATTCAGTTCATT
AATCCTCAGAGTGACAAATGTTTTCGATGTTTCATATGTTCGAAATGACT
CAGCTGTTTAGTCTAAATTAACGACTCATTCTCAATAATAACCATTGAAG
TTCATGGTAAATGATAGAACGTAGATTTGAGTTTCTTTGAGTGAGTTTAA
TTTCAATAATTCATTAATCTTGGTTAGGTATTCTTGATGTTCTTGCGTGT
TCGAGCTAAGATGACTCAGATTTCGGTACCATTGAATGACTCACTTTTCA
ATTTAATCATTCAAGCTCTCAGATGAATGATCGAATCAACCACCCGTGTC
CATTCAGTGCCAATGACTAATAGTTCATTAATAATTTGATACATTGTTTA
TTACAGTAAACCTTCGACGTCATTAGTTTTGTGAGTCAGCTCTTTCGACT
TCAAGAAAGTCTGTCGGATTGTATTCTGCATGtaatttaaccctattagc
cccaagcttttttgacttttgtatccccaggggggggtagaatctaccac
cctcgattatttttgatctaggaGAGCTACGGTCATGAAANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCTTCAGCATTCTTTGTGGATGCGCATGGCAGTCAGACC
GGGGTCAACGGGGTCCACTTGTGGAACCAGGCTAACCTAGGTCTGATGGC
CACGCAATCCGTCAATCCTCAATACGTCTTGTCCGGACGAACGCTCGCTG
AAGAATGTCTGAATTTCTATATCTGGTTGAGATATTTCTATCTCATGCAT
AATGCATATTTACAAACATTCAACAAACAAAATTCTATTTATAAATCCCT
CATGACagggccttttccgcgaaatatttctaaacaaaactcaaaatatg
tcagaTAAATACTGTTtaaatggttacttgcatcaaagaagcgctaacaa
tgtgtatttcaacaaccaacatgcacgatttggcagtaaaagccacaaaa
tcgtgaaaatattgccactcaatagtgccacccgcaaaattaagtccccg
tgaaattgaatttcgcggataggcccaactgcgaaatttaatcctcgcga
aagtttatcccattaaagtaatctTTCAGTACAAGTTCAAGttagaaaca
aaagaaagaaacaacaGGCTTCCAtacctttttctaattttttgactGGG
TTAGTACAggcacccctgtgtcacagaccaaAAACTTTGTCCCAAGTATG
AAAAATACCCTAGATTTTTGTTGGATCCTGATTTTGCTTTGGATCAACCT
TTAAACTTGCGAAAAAGGGAAAGTCAACTATGATACATTAGATGTTTTCT
TTTGCCTACAGTAGAACGGAACAtgaaattctattttcaaaCTTAACTCT
TGaaagtaccttaaaggaagaaattttgtcaggaatttaatttagcagat
gaaaaatttgttttaaggcctgaaatcaCACACATTCAGGAGAATAAATA
CAGTAATGGCAGGAAcctaatttggcggattttgactAAAtctgccaaat
ccgccaaattttctttccctaAAATTTCTTACCTTTTAAAGTAGAAGAAA
ATTAAATGAGATTTTTCTTATGGTGTTTTTTGTACAAAGGTATAATGAAa
agataaatttcttttttttttaagatgaagaAAGCCAATCACCATTTTCA
CAATCCAGCTTTGGGGCAGCATCTAATAACGAGGTGGCCATCCACAGTCA
ACAACCATTGAATCATCTCATGTTTATTTCAATGTTGGAACACATTTGCG
TCTTATACACACAAGATGAAAATGCTAGTGATGCACTTTTCAAAAGTATG
CAGTTGAAATTTTGATACACTTAATTTCtcctttatttaatttttcacaa
gaaatattttataggAATTTCTTTAGTAGCTCTAGATATTGATATGATTG
AGCCAAAACCCTTTAGTGTCATCAATCTCTTCCATAAAAATGGAGAAGGT
TAGAAGATTACAAAATATAAGAAATTCTTAGGCCTTTGGGTAAATTTTAA
AATGCTTCAATGGTCAAGAAACAAGAGTGTgattatttgacaaaaattat
atCTTCCAACCTTTGAAAGACTCAagtcctgtttttttttaagctttact
tttcatatgaaatttatttaataatgtttttgttctttttttcattattt
tagatGTTTGTGAAAAGCTCAAAAGTGGAATGGTAATTATATTCAATTTA
TTACAACACttatttcttataagaattaTTTCTAAAAGGATATTATTGtt
agaaaaaattcaagatcaGAAAGATATATATGTGTATCATCACCAAAACC
TATGCTTTTCAGGGAATTTCTGATTGtggatttcaaaatattactgGTGC
TAATTCGTCAccagaaaaattaaataatatcAGATATCAACTCTAGTGGC
TTATTTATAATGACTGACTTATCATGATATTAAATAAAACCgctttttat
ttcttagttGATACCAGACCTTGCTTATTTGGACGACTTCAAAGCAGTAA
GAATGAAATATCAAAGTGCACTCAAAAGTCTCATGGAAGGTTCTGTTCAA
ACGTTACAGGTGATTTTTCGTTTAATGTTTATACCTTCAagattatcttt
tttttaatctaataTCTTGGTTTATTAAGTTTATACAGCCCCTTTTCACA
GCCCCTTTTCAcaaacccggtaggattttttcagccagtggggataaaat
taaaggactaaaactcgatggggattgatgtCCCCATATttcttatggct
ggggatttcaattctcttgttttcaagtcagaaaattcagtctGGATGGG
AacaatagtaaatattttgaagtgaGGATaggtttttttaattgttttca
gtgggggcaaaaattggaggataatttttcaccggggacgatattttggc
tgatttttccagtggttctgtgagaagggggtgtgtttATTCTAAATGTT
TTAAAGAATTTAGGCTTTTAATAATTAATtaatatgtttttctttctttc
tggtATGGTACCAGGTTTGACTTgtcagaaaatatttaaaaattttatac
CAATTTCGTCCAAGTTACGGCTTTTTGGGTAACCACTGCCGTGTTTGACT
GAGTGAGtgtaatgaaaaatataaacatcaatttttagcccaaatttgaa
CTACTCAAAACTAAAGAACATCTCGCATTCAACAGGTACGAAAAGAACAA
ATCCTTTTTCATtggaaaacttaaaaaaaacttaaattttgatgggtttt
tTATTCAGATTTGGTTTTTATTTATACTTtaaggtgccaaataaacgggg
gggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNggggggggggcgtttatttggc
acctaagagtactatTAGAAAGTGTtcgaaaatgttaaaaaaatttatgg
GCATTCAAATGTCCAAAATCtattcatttttctttgcaGTTCAGCTGTCA
GTGGGTTCCATACACAGTCATTGTATAATGAAATGTTCTCCATGGAGGAA
CATATTGCATCAGGAGGCTTCGGAAAAGTTGTCAAAGCACAAAATAAACT
GGACCATAAGTTTTATGCCATCAAGAAAATCCCACTCGTTGATACAGATG
TCAAAAAGATTCTACAGGTTAGCTTTGGGCTTTTCCacaaatagtccgtg
cccccaccccctgttgaggatattggacAGCCAGGGGGCTCAATGCTttc
tggatatccagggggtaagacCTTTTAAGAGGGAGAGGATATCCAGAGGG
TTCAATGCTTTCTGGATATCCTTCTATCCACTTTTTCAGGTCGAATAAAC
AGGGGGTCTTTATTTTTAAGCTATACATCCAGGGGGTTTTGGAACTCGAA
AAATGGATATCCTCAACAGAGGGAGTGGTACAAAAAAATTCTGGAAAAGC
CCGCCATTCACCAATCAAGTTGATGAGCTTTTTGTCAATCGTTTTTTGTA
GAAAAGATTATAGTAGACATCATTcgagcgaaaaaataaaaaaaaaaaac
atttttaaaaccgttacgtcagatttgcccaatagaattacttcattttt
caaccaaccaatgaccttaaggccggtcttcactttcgcacgaaatgggc
gacagtttttttcttaaccctTTTTGCCTGAGGAAAAGTTTCTAttcgtt
acgtcaatttcgaccaatggaattgcttcattttccaaccgaccaatgac
cNACGTCATacaaaagtttcgcgcgaacaaaaaaaagtttccattcgtta
cgtcaatttcgaccaatggaattgcttcatttttcaaccgactaatgacc
ttacaaaaacgtttaaaaaagttttcgctcattttgCGCGAAAgtagaga
ccggcctttagttAGTCCACCCAATCGTTATAAACCCTGGAAGATCTAAA
AGCTGTGCTTCCCGTTCTGATTTATCAAATGTGGTTGCAACATCGAAAGT
AATTCATGATATacatcattgcaatgtcttctgacattacaccACGggcc
caatagctgattggttttaagtgacgtaaaatcactTAAAGTGTATCCAG
ATGCCCCTTGGTGGCACTTTTCTGTGAGACaccaaatcttcaaattttta
ctaaaaacgggggttatgttatcttttctGAACAGtgcaaccaaaaatac
attcaaatatagcgcttttgattctctaaaacaagcaaaagatTTTTTGC
AATTATAtcggactatcaaaagttacaggcattcttttttccactgccaa
ttatatctggatataCTTTAATACgtcattttcaaccaatcagctgttgg
ggcCATGGAACaggaagacattgtaatggtggatatcatgaattgccatt
tctgttttatttttcagacattAAGGGAGGTGCAGATCTTTTCAAATTTG
GAACACACAAATATTGTGCGTTACCATTCTTCATGGTTAGAGCATGGTGT
CGAAACATTTCTTCAAAAAGGTGAGAAGAAATGTTCTTTAATCTAATATA
CTCTTCTTACACGTtatattataagaacatctaaaatatgttcttaactt
tgagCCTAAAAATTATCTTAACAACTTATTTTCACTactttgttagtatt
tttatgCATATTTTTCTAATAAATCGTCCGCAAGGCCTTacgttcttagc
ttgttcttgatatttttgccATCAAAGCCTTCTTATAtggttttttctta
taaaaaaaatgtgtacgcAGTGTGTGGAACAggtttgaaaaattctttgc
atgccataatttgaaattttaggaTGATATTTGATTTGgaggattttatt
ttctataaaatctgttttcttttttcctaaCTGTGAAAAACAAGTAAGTT
CGGAGTTAAtggaatttttcttcaaattttatgCCTTGTCTCAGCTGGTC
TCCGTAAAAGAAATACTTAATTAAACTGAATTAAAATTTCGTCGggatac
aaaacaaaaagagTACATCTTAGATTAGCACaatttttagaattaaaaaG
TAAGATCGTTCATGTCGAGTTCTTCAAAAACTAATTGGTGTCTTGTTAAT
TGACTCGTGTGATTAATTTGATTTATGGTTCTCAATTCTTTCTCATCATG
TCCATGGCAGTACTCATAATATGGTAAATATTTGCctcataatttttatt
tttggggtctggttcaaaggttcttattttcacatCCTTTACAAATGCAT
GTTTTTTAAAAGCCTCAgacatttttgttgtttctctGCAGCAAATAATA
GCTCCGACACATTCACAATTCTCGTCATCAAATTCGGTCAAATTGGTTCT
ATATCGGCATGTTTGGTCGATACACTTTGATGGGAGATAGGTATTTTCAT
AACTTTTCAACTCTAAGACGACAGCTTTCCATTCGCCTTCGACTTTCACC
CATATCACAATGTCGGGACGGAGTTTTCTGCCGTTAGAATTATCAGTAAT
GGTTGTTTGTGATTTTACGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006006XLOC_006006Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010711-exon-sc0000109-1491911889:415525..415554TCONS_00010711-exon-sc0000109-1491911889:415525..415554Clytia hemisphaericaexon
TCONS_00010711-exon-sc0000109-1510915933:415525..415554TCONS_00010711-exon-sc0000109-1510915933:415525..415554Clytia hemisphaericaexon
TCONS_00010711-exon-sc0000109-1575043694:415525..415554TCONS_00010711-exon-sc0000109-1575043694:415525..415554Clytia hemisphaericaexon
TCONS_00010711-exon-sc0000109-1491911889:427799..427969TCONS_00010711-exon-sc0000109-1491911889:427799..427969Clytia hemisphaericaexon
TCONS_00010711-exon-sc0000109-1510915933:427799..427969TCONS_00010711-exon-sc0000109-1510915933:427799..427969Clytia hemisphaericaexon
TCONS_00010711-exon-sc0000109-1575043694:427799..427969TCONS_00010711-exon-sc0000109-1575043694:427799..427969Clytia hemisphaericaexon
TCONS_00010711-exon-sc0000109-1491911889:428328..428356TCONS_00010711-exon-sc0000109-1491911889:428328..428356Clytia hemisphaericaexon
TCONS_00010711-exon-sc0000109-1510915933:428328..428356TCONS_00010711-exon-sc0000109-1510915933:428328..428356Clytia hemisphaericaexon
TCONS_00010711-exon-sc0000109-1575043694:428328..428356TCONS_00010711-exon-sc0000109-1575043694:428328..428356Clytia hemisphaericaexon
TCONS_00010711-exon-sc0000109-1491911889:428632..428733TCONS_00010711-exon-sc0000109-1491911889:428632..428733Clytia hemisphaericaexon
TCONS_00010711-exon-sc0000109-1510915933:428632..428733TCONS_00010711-exon-sc0000109-1510915933:428632..428733Clytia hemisphaericaexon
TCONS_00010711-exon-sc0000109-1575043694:428632..428733TCONS_00010711-exon-sc0000109-1575043694:428632..428733Clytia hemisphaericaexon
TCONS_00010711-exon-sc0000109-1491911889:429313..429359TCONS_00010711-exon-sc0000109-1491911889:429313..429359Clytia hemisphaericaexon
TCONS_00010711-exon-sc0000109-1510915933:429313..429359TCONS_00010711-exon-sc0000109-1510915933:429313..429359Clytia hemisphaericaexon
TCONS_00010711-exon-sc0000109-1575043694:429313..429359TCONS_00010711-exon-sc0000109-1575043694:429313..429359Clytia hemisphaericaexon
TCONS_00010711-exon-sc0000109-1491911889:430014..430191TCONS_00010711-exon-sc0000109-1491911889:430014..430191Clytia hemisphaericaexon
TCONS_00010711-exon-sc0000109-1510915933:430014..430191TCONS_00010711-exon-sc0000109-1510915933:430014..430191Clytia hemisphaericaexon
TCONS_00010711-exon-sc0000109-1575043694:430014..430191TCONS_00010711-exon-sc0000109-1575043694:430014..430191Clytia hemisphaericaexon
TCONS_00010711-exon-sc0000109-1491911889:431442..431544TCONS_00010711-exon-sc0000109-1491911889:431442..431544Clytia hemisphaericaexon
TCONS_00010711-exon-sc0000109-1510915933:431442..431544TCONS_00010711-exon-sc0000109-1510915933:431442..431544Clytia hemisphaericaexon
TCONS_00010711-exon-sc0000109-1575043694:431442..431544TCONS_00010711-exon-sc0000109-1575043694:431442..431544Clytia hemisphaericaexon
TCONS_00010711-exon-sc0000109-1491911889:432316..432546TCONS_00010711-exon-sc0000109-1491911889:432316..432546Clytia hemisphaericaexon
TCONS_00010711-exon-sc0000109-1510915933:432316..432546TCONS_00010711-exon-sc0000109-1510915933:432316..432546Clytia hemisphaericaexon
TCONS_00010711-exon-sc0000109-1575043694:432316..432546TCONS_00010711-exon-sc0000109-1575043694:432316..432546Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000109supercontigsc0000109:415525..432546 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.666076	2.0162	0.713892	0.297504	1.67508	1.43118	1.23291	0.891386	3.09881	4.51312	1.65783	2.4423	2.99194	2.36945	3.02651	0.668404	1.31076	3.05856	0.317731	1.53976	1.91502	1.36367	0.623622	1.18074	2.23201	2.8401	0	0	0.213777	0
Blast
[Close]
BLAST of TCONS_00010711 vs. Swiss-Prot (Human)
Match: E2AK1 (Eukaryotic translation initiation factor 2-alpha kinase 1 OS=Homo sapiens GN=EIF2AK1 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.045e-16
Identity = 46/153 (30.07%), Postives = 82/153 (53.59%), Query Frame = 3 
Query:  183 SDALFKNVCEKLKSGMLIPDLAYLDDFKAVRMKYQSALKSLMEGSVQTLQ--PKFELLKTKEHLAFNSSAVSGFHTQSLYNEMFSMEEHIASGGFGKVVKAQNKLDHKFYAIKKIPLVDTDVKKILQTLREVQIFSNLEHTNIVRYHSSWLEH 635
            S  +FK +C+      L+      D+F ++R+ +  A+  LM  + + ++  P  ++ + ++     S  V+     S Y   F     +  GG+G+V K +NKLD ++YAIKKI +        ++ LREV++ + L+H NIV YH++W+EH
Sbjct:   87 SRQVFKLLCQTFIKMGLLSSFTCSDEFSSLRLHHNRAITHLMRSAKERVRQDPCEDISRIQK---IRSREVALEAQTSRYLNEFEELAILGKGGYGRVYKVRNKLDGQYYAIKKILIKGATKTVCMKVLREVKVLAGLQHPNIVGYHTAWIEH 236
The following BLAST results are available for this feature:
BLAST of TCONS_00010711 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
E2AK11.045e-1630.07Eukaryotic translation initiation factor 2-alpha k... [more]
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