TCONS_00010671 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010671
Unique NameTCONS_00010671
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length650

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010671 ID=TCONS_00010671|Name=TCONS_00010671|organism=Clytia hemisphaerica|type=transcript|length=650bp
TGCGTACAGAGCAGCTATCTTCATCTCCAAAGGAGAGTTGTTTGATAGTT
TAAGGAGAGATAAAACAGCCTCATTGGATAAAGCAGATAATGTTGTGAGT
TTGGGAGACTCAAGGACCATTAAAAGGACAAATGAACGTGgaaaatggtt
gaaaaaattACGTGAGAAAGCTCAAGAAATTCATGAGagcatcaaagaaa
acaaaaaccaaGCTGCAGTTAAAACTAAACCTCGTTCTTCAATAATATTT
ACCCACCAACATATTGCAGCGCATCCAACAAAATCAGTAATTTCACTGAT
GAAGGAGTTAAAAGCACGTAAACTTCATACCAAAACCATCGCTCAAAAGA
CAACATCTTCTTTGGGTTTACAAACTGAGAttattgaccaatcagaagca
aCGGAGGACGAAATGGACCAATCAGAAAGCACCTTTCTATACACAGGTGA
CAAAAATACCCAATCAGAAATCTCTCAAAGAAAAGCTATTCCATCGAATC
GAAATTCCTTTGACAGAATTCTCAGACCGATGTTATCAGACAATGCAATG
TCAGGTATAAATATaccaaaacaagaaaatgaatACAAAACTTTAGAAGA
AATGAGGATCGCCATGAAAAGGCAGCGAAATTTAAATGGACCTAAATTCG
Run BLAST on NCBI

protein sequence of TCONS_00010671-protein

>TCONS_00010671-protein ID=TCONS_00010671-protein|Name=TCONS_00010671-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
AYRAAIFISKGELFDSLRRDKTASLDKADNVVSLGDSRTIKRTNERGKWL
KKLREKAQEIHESIKENKNQAAVKTKPRSSIIFTHQHIAAHPTKSVISLM
KELKARKLHTKTIAQKTTSSLGLQTEIIDQSEATEDEMDQSESTFLYTGD
KNTQSEISQRKAIPSNRNSFDRILRPMLSDNAMSGINIPKQENEYKTLEE
MRIAMKRQRNLNGPKF
Run BLAST on NCBI

transcript from alignment at sc0000108:353194..353843

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010671 ID=TCONS_00010671|Name=TCONS_00010671|organism=Clytia hemisphaerica|type=transcript|length=650bp|location=Sequence derived from alignment at sc0000108:353194..353843 (Clytia hemisphaerica)
CGAATTTAGGTCCATTTAAATTTCGCTGCCTTTTCATGGCGATCCTCATT
TCTTCTAAAGTTTTGTattcattttcttgttttggtATATTTATACCTGA
CATTGCATTGTCTGATAACATCGGTCTGAGAATTCTGTCAAAGGAATTTC
GATTCGATGGAATAGCTTTTCTTTGAGAGATTTCTGATTGGGTATTTTTG
TCACCTGTGTATAGAAAGGTGCTTTCTGATTGGTCCATTTCGTCCTCCGt
tgcttctgattggtcaataaTCTCAGTTTGTAAACCCAAAGAAGATGTTG
TCTTTTGAGCGATGGTTTTGGTATGAAGTTTACGTGCTTTTAACTCCTTC
ATCAGTGAAATTACTGATTTTGTTGGATGCGCTGCAATATGTTGGTGGGT
AAATATTATTGAAGAACGAGGTTTAGTTTTAACTGCAGCttggtttttgt
tttctttgatgctCTCATGAATTTCTTGAGCTTTCTCACGTaattttttc
aaccattttcCACGTTCATTTGTCCTTTTAATGGTCCTTGAGTCTCCCAA
ACTCACAACATTATCTGCTTTATCCAATGAGGCTGTTTTATCTCTCCTTA
AACTATCAAACAACTCTCCTTTGGAGATGAAGATAGCTGCTCTGTACGCA

Coding sequence (CDS) from alignment at sc0000108:353194..353843

>TCONS_00010671 ID=TCONS_00010671|Name=TCONS_00010671|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0000108:353194..353843 (Clytia hemisphaerica)
GAATTTAGGTCCATTTAAATTTCGCTGCCTTTTCATGGCGATCCTCATTT
CTTCTAAAGTTTTGTattcattttcttgttttggtATATTTATACCTGAC
ATTGCATTGTCTGATAACATCGGTCTGAGAATTCTGTCAAAGGAATTTCG
ATTCGATGGAATAGCTTTTCTTTGAGAGATTTCTGATTGGGTATTTTTGT
CACCTGTGTATAGAAAGGTGCTTTCTGATTGGTCCATTTCGTCCTCCGtt
gcttctgattggtcaataaTCTCAGTTTGTAAACCCAAAGAAGATGTTGT
CTTTTGAGCGATGGTTTTGGTATGAAGTTTACGTGCTTTTAACTCCTTCA
TCAGTGAAATTACTGATTTTGTTGGATGCGCTGCAATATGTTGGTGGGTA
AATATTATTGAAGAACGAGGTTTAGTTTTAACTGCAGCttggtttttgtt
ttctttgatgctCTCATGAATTTCTTGAGCTTTCTCACGTaattttttca
accattttcCACGTTCATTTGTCCTTTTAATGGTCCTTGAGTCTCCCAAA
CTCACAACATTATCTGCTTTATCCAATGAGGCTGTTTTATCTCTCCTTAA
ACTATCAAACAACTCTCCTTTGGAGATGAAGATAGCTGCTCTGTACGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005983XLOC_005983Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010671-proteinTCONS_00010671-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010671-exon-sc0000108-1491911889:353194..353843TCONS_00010671-exon-sc0000108-1491911889:353194..353843Clytia hemisphaericaexon
TCONS_00010671-exon-sc0000108-1510915933:353194..353843TCONS_00010671-exon-sc0000108-1510915933:353194..353843Clytia hemisphaericaexon
TCONS_00010671-exon-sc0000108-1575043694:353194..353843TCONS_00010671-exon-sc0000108-1575043694:353194..353843Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000108supercontigsc0000108:353194..353843 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0804484	0.1569	0.546527	0.17823	0.433957	0	0.517146	0.580974	0.474546	0.587802	0.081505	1.01799	1.92613	2.50039	6.62378	3.87282	1.20785	0.247601	0	0	0	0.113818	0	0.16772	0.172748	0.154173	0	0	0	0.0909739
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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