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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010651 ID=TCONS_00010651|Name=TCONS_00010651|organism=Clytia hemisphaerica|type=transcript|length=4697bpRun BLAST on NCBI transcript from alignment at sc0000108:472417..490481- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010651 ID=TCONS_00010651|Name=TCONS_00010651|organism=Clytia hemisphaerica|type=transcript|length=18065bp|location=Sequence derived from alignment at sc0000108:472417..490481- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00010651 vs. Swiss-Prot (Human)
Match: CNTP5 (Contactin-associated protein-like 5 OS=Homo sapiens GN=CNTNAP5 PE=2 SV=1) HSP 1 Score: 291.197 bits (744), Expect = 3.273e-80 Identity = 262/977 (26.82%), Postives = 421/977 (43.09%), Query Frame = 3
Query: 228 VYRF-PKQITTQKNHIKLRFKTIHSTGLIMFAQGANKKDFLSVELFRGKIRLAGDYGRGTENKLRPIGGFYDMYLGKDLADNEWHTVEVVRNIRESIIFIDRGRGKMEKSIFMKSPPTYNELSVSMVTFGGYYSFSTSEISTNQALSRKGLSGCFSEATFSTTWPEDDTQEIDFLKSGVGQIVGESNDVKGVCSDMSSYKPMFFPSSAVHLALVEPYNQTGLQMSLKFRTVVSDSVIANYTHIRTGQRLQLKLDREGRVELGFD-LGHRLQVIETAKEKYHDGEWHSASFVVNNVKN--------------GESYEVEFVVDGKTRLSKMSDIFKFEGAVNVGFGFTGCMRDIKINNYELYRVPKKADNLNDVFRISDIGVVKNYCSLKDYCNPNPCQNGGKCNQTEDNIVCDCRGTLYEGSTCHRPRFNYTCAGVRKSGERRSDVYYIDFDGLGPMEPVQALCDLGKTVETTVTQINNTKIKDKNVLTDTGKNDVDVEYLASITQMRELIKNSATCSQFIKLQCKGVPIFLSPTGPPAANWIGGDDVVHYYWGGAKGQRGYCACGVRGDCKVGGRPTGQYCNCDSFQSKYQIVDEGNFTIKDHLPVRRVHFDKVLEGGGSEAMLRVGHLRCAGFGSRLNAATFRKPWSFVGMDHPDQPFDNIFAGSISFDFKTSIAYNYMTMMHAHGPFSGDYCKVMIWSRTMVRVLLNFGFGQIKQDVDISSTGRTLDDNDWHEFELMFNLKELNVTLDGIRMIQGLPLQDDPVQFNVDDKAVFVGGSYHDKNGFIGCIRSFYANGRIHDIRGAAEGLESSGVYPGCGSACVLLNRPC-NYGKCEDQYNDFKCNCTVSPFTGKYCQNTTRGKQFNSGNSLEYTFAGNEPVSQMI-----------------IVVGFKTTQNNAALAQL--EGQDYRHVTLALVDGFLTLYYSFKKKVETSSGFDADDEVKALRITKRRLNNDKHN 3050
+YRF K ++T K+ I L+FK++ G++ +G + D +++EL +G++ L + G ++K R LG L D WH+V + R ++ +D+ + ELS + G +K GC + + ID K QI + +V CS+ F SS +L L GL +S +FRT D ++ + T + G L G + L + R+ I T +DG WHS S +N +N +S V+ D +N F GCMR I I+N + + +L + SD+ + + CS+KD C PN C++GG C+Q+ C+C T Y G+TCH + +C R G + +YID DG GP+ P+Q C++ + T Q NNT++ + ++Y S+ Q+ +I S C Q + C+ + +P G P WIG + H YWGG+ C CG+ C +CNCD+ + ++ D G + KDHLPV ++ + SEA R+G LRC G NA +F S++ F F+ ISF FKT+ ++ + D+ ++ I S + + ++ G G ++ V S L+DN WH NLKE ++ +D + ++ + ++ + +FVGG+ + GF+GCIRS + NG+ D+ A+ +SGV PGC C C N GKC +++N + C+CT SP+ G +C+ F +G S+ Y F PV++ I I + F TTQ + L + QD+ V L +G L + Y K+ DAD+ RR+++ K N
Sbjct: 190 LYRFNQKLMSTLKDVISLKFKSMQGDGVLFHGEG-QRGDHITLELQKGRLALHLNLG---DSKARLSSSLPSATLGSLLDDQHWHSVLIERVGKQVNFTVDKHTQHFRTKGETDALDIDYELSFGGIPVPG----------KPGTFLKKNFHGCIENLYY------NGVNIIDLAKRRKHQIY--TGNVTFSCSEPQIVPITFVNSSGSYLLLPGTPQIDGLSVSFQFRTWNKDGLLLS-TELSEGSGTLLLSLEGGILRLVIQKMTERVAEILTGS-NLNDGLWHSVS--INARRNRITLTLDDEAAPPAPDSTWVQIYSGNSYYFGGCPDNLTDSQCLNPIKAFQGCMRLIFIDNQPKDLISVQQGSLGN---FSDLHI--DLCSIKDRCLPNYCEHGGSCSQSWTTFYCNCSDTSYTGATCHNSIYEQSCEVYRHQGN-TAGFFYIDSDGSGPLGPLQVYCNITEDKIWTSVQHNNTELTRVRGANPEKPYAMALDYGGSMEQLEAVIDGSEHCEQEVAYHCRRSRLLNTPDGTPFTWWIGRSNERHPYWGGSPPGVQQCECGLDESC----LDIQHFCNCDADKDEW-TNDTGFLSFKDHLPVTQIVITDT-DRSNSEAAWRIGPLRCYGDRRFWNAVSFYTEASYLHF----PTFHAEFSADISFFFKTTA----LSGVFLENLGIKDFIRLEISSPSEITFAIDVGNGPVELVVQSPS---LLNDNQWHYVRAERNLKETSLQVDNLPRSTRETSEEGHFRLQLNSQ-LFVGGTSSRQKGFLGCIRSLHLNGQKMDLEERAK--VTSGVRPGCPGHCSSYGSICHNGGKCVEKHNGYLCDCTNSPYEGPFCKKEVSAV-FEAGTSVTYMFQEPYPVTKNISLSSSAIYTDSAPSKENIALSFVTTQAPSLLLFINSSSQDFV-VVLLCKNGSLQVRYHLNKEETHVFTIDADN------FANRRMHHLKIN 1106 The following BLAST results are available for this feature:
BLAST of TCONS_00010651 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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