|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010648 ID=TCONS_00010648|Name=TCONS_00010648|organism=Clytia hemisphaerica|type=transcript|length=674bp
TGAGAAATAACAACCCTCGACAACATCGACACTATTAATCACCAAGGAAC
AGAAAtctaaaattgttaatttatcTAAAGAGGAGAATCATAGACTTGTC
GTTAAATTGAGCATTGCTTGACATTTATAACATACTGCAAGATACCTTAG
ATTTGTTACAAATAATGGTACACAGCAATAACACCTCACCACCACTACCA
CCAACATTCACCACAGAGTGTTACCACGTTTTCCGCCACCAAGACATTAC
TGGTGAACACCACAAACTACTGATCATTATActcatcatcattttcatct
tcattgtcACTTCCAACATCCTTCTCATCTTTGGTGTTCGAAAGACCTCC
AAGAATGGATATTCCTCCACCAATAAAATGTTCCTCTATCTCTCAGTCAT
TGATTTGTCAACAGGTCTCTTTATCATACCTAATCAGATAGCAATGATCA
TTCTAGGTCAAAATGCATCGTGTTTCCAAGTTGGATTACAAGCATTCTTG
AACGCATTAACACCTCTTATGGCAATGAACACTATTTTCACCATGTCCAT
ATTACGGTATCTCTCCATNCAAGAATGGATATTCCTCCACCAATAAAATG
TTCCTCTATCTCTCAGTCATTGATTTGTCAACAGGTCTCTTTATCATACC
TAATCAGATAGCAATGATCATTCT Run BLAST on NCBI protein sequence of TCONS_00010648-protein >TCONS_00010648-protein ID=TCONS_00010648-protein|Name=TCONS_00010648-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
MVHSNNTSPPLPPTFTTECYHVFRHQDITGEHHKLLIIILIIIFIFIVTS
NILLIFGVRKTSKNGYSSTNKMFLYLSVIDLSTGLFIIPNQIAMIILGQN
ASCFQVGLQAFLNALTPLMAMNTIFTMSILRYLSXQEWIFLHQ Run BLAST on NCBI transcript from alignment at sc0000108:277413..278624- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010648 ID=TCONS_00010648|Name=TCONS_00010648|organism=Clytia hemisphaerica|type=transcript|length=1212bp|location=Sequence derived from alignment at sc0000108:277413..278624- (Clytia hemisphaerica)
TGAGAAATAACAACCCTCGACAACATCGACACTATTAATCACCAAGGAAC
AGAAATCTAAAATTGTTAATTTATCTAAAGAGGAGAATCATAGACTTGTC
GTTAAATTGAGCATTGCTTGACATTTATAACATACTGCAAGATACCTTAG
ATTTGTTACAAATAATGGTACACAGCAATAACACCTCACCACCACTACCA
CCAACATTCACCACAGAGTGTTACCACGTTTTCCGCCACCAAGACATTAC
TGGTGAACACCACAAACTACTGATCATTATACTCATCATCATTTTCATCT
TCATTGTCACTTCCAACATCCTTCTCATCTTTGGTGTTCGAAAGACCTCC
AAGAATGGATATTCCTCCACCAATAAAATGTTCCTCTATCTCTCAGTCAT
TGATTTGTCAACAGGTCTCTTTATCATACCTAATCAGATAGCAATGATCA
TTCTAGGTACGTAGTGCATTTTTGATTGAGGGAAATCAATATTTGTGACA
GAATTTGTTAATTTCCCCTCTTAATTTAACGATGTAACAAACTAACCTCC
TCAGATTCAATTTGTACTCTTACCATTACATCCATCAGGCAGATGTTTAC
AAAAACATTCATCGAAAACCCGCTTTTTACTGGGTCAAACTCACAGAACT
CAAGAGTAGTGGCTTTTATTTATCCATACCATACTGGACGAATGACNCAA
CGTGTATTTAGTTCATAGATAGCCGAGCTGGCAGACCGTTGGCCCCGTGA
AAACAATTGAAAGCCTGTTTATGTGGGACAAGCTGGAGTTTTTACAAGCT
CTTATTTGATTTGGTTGGTCGTTAAGATGTAATAAATAATAAAAGAATCT
TTAAGAATTACTTTTTCTAAAGAACGCGCCATCTCTATCACTTTAAATGA
CCAATTAGTGAAGTATCTTGTAAAAACTCCAGCTCATCCCGTTTATGTCC
TAGATTACTCCATGTTAAATATTGACTCTTTCTATAATTTCTAGGTCAAA
ATGCATCGTGTTTCCAAGTTGGATTACAAGCATTCTTGAACGCATTAACA
CCTCTTATGGCAATGAACACTATTTTCACCATGTCCATATTACGGTATCT
CTCCATNCAAGAATGGATATTCCTCCACCAATAAAATGTTCCTCTATCTC
TCAGTCATTGATTTGTCAACAGGTCTCTTTATCATACCTAATCAGATAGC
AATGATCATTCT Coding sequence (CDS) from alignment at sc0000108:277413..278624- >TCONS_00010648 ID=TCONS_00010648|Name=TCONS_00010648|organism=Clytia hemisphaerica|type=CDS|length=864bp|location=Sequence derived from alignment at sc0000108:277413..278624- (Clytia hemisphaerica)
GTCAAAATGCATCGTGTTTCCAAGTTGGATTACAAGCATTCTTGAACGCA
TTAACACCTCTTATGGCAATGAACACTATTTTCACCATGTCCATATTACG
GTATCTCTCCATNCAAGAATGGATATTCCTCCACCAATAAATGGTACACA
GCAATAACACCTCACCACCACTACCACCAACATTCACCACAGAGTGTTAC
CACGTTTTCCGCCACCAAGACATTACTGGTGAACACCACAAACTACTGAT
CATTATACTCATCATCATTTTCATCTTCATTGTCACTTCCAACATCCTTC
TCATCTTTGGTGTTCGAAAGACCTCCAAGAATGGATATTCCTCCACCAAT
AAAATGTTCCTCTATCTCTCAGTCATTGATTTGTCAACAGGTCTCTTTAT
CATACCTAATCAGATAGCAATGATCATTCTAGGTCAAAATGCATCGTGTT
TCCAAGTTGGATTACAAGCATTCTTGAACGCATTAACACCTCTTATGGCA
ATGAACACTATTTTCACCATGTCCATATTACGGTATCTCTCCATNCAAGA
ATGGATATTCCTCCACCAATAAATGGTACACAGCAATAACACCTCACCAC
CACTACCACCAACATTCACCACAGAGTGTTACCACGTTTTCCGCCACCAA
GACATTACTGGTGAACACCACAAACTACTGATCATTATACTCATCATCAT
TTTCATCTTCATTGTCACTTCCAACATCCTTCTCATCTTTGGTGTTCGAA
AGACCTCCAAGAATGGATATTCCTCCACCAATAAAATGTTCCTCTATCTC
TCAGTCATTGATTTGTCAACAGGTCTCTTTATCATACCTAATCAGATAGC
AATGATCATTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010648-exon-sc0000108-1575043694:278169..278624 | TCONS_00010648-exon-sc0000108-1575043694:278169..278624 | Clytia hemisphaerica | exon |
| TCONS_00010648-exon-sc0000108-1575043694:277413..277630 | TCONS_00010648-exon-sc0000108-1575043694:277413..277630 | Clytia hemisphaerica | exon |
| TCONS_00010648-exon-sc0000108-1510915933:278169..278624 | TCONS_00010648-exon-sc0000108-1510915933:278169..278624 | Clytia hemisphaerica | exon |
| TCONS_00010648-exon-sc0000108-1510915933:277413..277630 | TCONS_00010648-exon-sc0000108-1510915933:277413..277630 | Clytia hemisphaerica | exon |
| TCONS_00010648-exon-sc0000108-1491911889:278169..278624 | TCONS_00010648-exon-sc0000108-1491911889:278169..278624 | Clytia hemisphaerica | exon |
| TCONS_00010648-exon-sc0000108-1491911889:277413..277630 | TCONS_00010648-exon-sc0000108-1491911889:277413..277630 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000108 | supercontig | sc0000108:277413..278624 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
|
