TCONS_00010642 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010642
Unique NameTCONS_00010642
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1018

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010642 ID=TCONS_00010642|Name=TCONS_00010642|organism=Clytia hemisphaerica|type=transcript|length=1018bp
tcaaaatagaaaaagaataaaatcaaatcaaaactttgGTCTGGTGTTCA
AGTGAAAAGTTTGCATAGTGAGGAGGTCCAAACAACTAACGTATAGATAA
AGATAGGCATCTAAAGGAACGATGCTGAACTCCCTCAGAGATTGTCTTGG
TTTGAATAAACGAACTTCTTTATTACTACTGGGAATCAATTCAGCTGGCA
AAACATCAATTTTGTATCGTTTATTGCTTGGAGAATTGATGAAAGTTATA
CCAACAGTAGGTTTCCAATCAGAAGACATATTACACAATGGAAATTATTT
CAGAATTCTTGACATCGGAGGGGGCTGCAAAATACCTCCATTATGGCGTC
ATTATTTCGAACATTATCAAGGTATTATCTACGTGGTAGATTCGACAAGC
CGTGATTACATTGAAGAAACAAAATCCACTTTATATCATTGCATATTAAT
TAAAGACGAAGCTCAACATTATCCAATTATAGTTTTTGCCAATAAACAGG
ACTTACCGAACGCAATGAGCACATTAGAAATCACCGAAAAATTAGAATTG
AACGAAATCAAAGATCGAAGTTGGCATATCCAAGGAACTTCTGCTTCGAC
AGGTGAAGGTCTTTATGAAGGTTTAGACTGGATCTatgatgaaatacaaa
ataaaaaacaggATTGAAAGATATGTTTATAGCACATGTCTTTGGTTAGA
ATCATTGTGATGAGTTTAACACTGGAGAAGGagcgaaaacaaaggaaatt
gacACGGTAGTAAATGTTTTGAAGAGTGTTTTGGCGCCACTGCCCGAGCA
AGGAAACCTCTTAAACTTCAAGACAGGATGGTGAGTTCATCATTAAAAGA
TTTGTACATACCTATCAGAGGAAAGATACCATCAAATAATGTTTCCGTGT
GGCTGCAATTTCTATCGGTGATGACCAACCCACCACGTAGTTTTAGATTT
CGCTCCGTGGATTACAACTAGCTTTATATTACAATCAAATTTGTTAACCT
AGTTCTTGATTTTATTTT
Run BLAST on NCBI

protein sequence of TCONS_00010642-protein

>TCONS_00010642-protein ID=TCONS_00010642-protein|Name=TCONS_00010642-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MLNSLRDCLGLNKRTSLLLLGINSAGKTSILYRLLLGELMKVIPTVGFQS
EDILHNGNYFRILDIGGGCKIPPLWRHYFEHYQGIIYVVDSTSRDYIEET
KSTLYHCILIKDEAQHYPIIVFANKQDLPNAMSTLEITEKLELNEIKDRS
WHIQGTSASTGEGLYEGLDWIYDEIQNKKQD
Run BLAST on NCBI

transcript from alignment at sc0000108:551944..555872+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010642 ID=TCONS_00010642|Name=TCONS_00010642|organism=Clytia hemisphaerica|type=transcript|length=3929bp|location=Sequence derived from alignment at sc0000108:551944..555872+ (Clytia hemisphaerica)
tcaaaatagaaaaagaataaaatcaaatcaaaactttgGTCTGGTGTTCA
AGTGAAAAGTTTGCATAGTGAGGAGGTCCAAACAACTAACGTATAGATAA
AGATAGGCATCTAAAGGAACGATGCTGAACTCCCTCAGAGATTGTCTTGG
TTTGAATAAACGAACTTCTTTATTACTACTGGGAATCAATTCAGCTGGCA
AAACATCAATTTTGTATCGTTTATTGCTTGGAGAATTGATGAAAGTTATA
CCAACAGTAGGTAAATAGTTTTCCTTTATTTTGCCTTCTTCTTTGTCGTA
CACGAAGGTAGAATAAAAATGGTTcttgatacctctctgcttgatgctca
gtactaaagagaaagatcaagggtaagtggagcaatccagggaaaggaAT
GGCGCCCTtccctaccttcaggtagacAACTAGAGAAAAGGGTCAccctc
gactgcggtcacaCACTTACCaatgtaggatttgaagccactcATTCCCT
ACATGGGTCTGCGTGATTTTCATACAAATGCTGGATTGGAATAAGTAAGG
TTTGGATTGGAAAAAGTAAGATTTACtgccaaatttgaaaatgtaaaacg
caaaaacaaagaaaaagtttcatttcGTCATCCGAAGAGTGGCGTATATc
taaaggcttcactttttcttgcttgcgaaaggttgaagattcaccTCTGG
CGATCGGCTTTAAACTCAATCATTCttattttaatcaaaaatatatttca
aaaccaaaaaatttaaaaatccataactcggagtttcatgctctaagcaa
tcatcagatgtaactaaaaaattaaaaagctgtgtAAAAACATATGTTAC
AAAATTGGTAAATTGGTAAATCTTATTTTATGAAGGTTTCCAATCAGAAG
ACATATTACACAATGGAAATTATTTCAGAATTCTTGACATCGGAGGGGGC
TGCAAAATACCTCCATTATGGCGTCATTATTTCGAACATTATCAAGGTAT
ATAATATTTATTTGTTGTATAAAATGTCAGAAAGAattgttttagtgaaa
attataGGGCTTTGTATAAAATGTTACATTTGACCCCTTTTGATTAATCG
TATAGTTTGAAAAGATTGTTAGTGGTTTCCTAGCACCCACAACCTATAAA
TATCGTCTGAGTTTCAGAAAGccatttcttcaatttcttctagAGCCTCT
AATTATCAACGTGATAtagtcttcataactcgaacccgcatgaggaacac
aaatttgttcgagttacgaaggcattgttaacttaagggctctgaccata
gtgaatttttcataattgccgtgtttaaaatgtgttttctgactgattta
accaacaaaactatggcatgttatacatttNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgcaaacta
ttcctgaatctgaaaattcaaaaattgcattgaaaaaatttgatgaaaaa
gaaaatgaagacttttgcgagaaagagtatttcaactttgaagagcttag
tttcggcgaagaaaaaactttttgaaacatttttcgcagtagatggtgta
tcttttaccgaacaataaaaatttttgcggaaaatttttcttaatgcttc
tttgtctctaAATCTTCAAagtagtggtttttcatcaatttttcatctgg
attttgcttgaaaaaacagtcataacttttgacacatctttttagaaaga
ttttccgcaaaatttaaaatagttcaattcgttgcggacagtttgaaaaa
agttggaaacaaaaaggttaattacccattaaaacttagcactttttata
aaagaaggcgatgcaacatattattaacgtctttttaaagttcataacgt
catttttgcaattaagttcttaattactcttaaggggtttgattaaaaag
caatttataaaggcaattcttagGTAAAAGTGTTAAAGGATCTAAAACAT
agcttttatgttcagatacgaaaatcaattttctgactatggtcagagcc
cttaaggagagatccgagttcaagtctacTGTAGTTCTATGTAAGAGAAC
AATCATATACTTTatcatgcatgatttgacagtataaggcacaaaatcgt
gaaaatattgtcactcAATAGTACcgtccgcgaaattaagtccccgcgga
TATCTCAAAATTTCACGGATGAGCTCAAACGCAAAacttaatccccgcga
aaattaattccattAAAGTAGCTAAAATCATTTATAGACAAAagattaaa
ttgaaaaatatttttgaaatcattttcctaaaaaattatagcgctctgaa
ttatcttttcaacggtaaaTTGATAGCTAATTTCAGACTTTACTTACTAT
TCAAAACTACTATTGAAAACTTTCTTGGATTTAAAACACCTATCAACAAT
CTAAACGCTTAAGGTAGAAAAGTTCATTAAGTCTTTTTTTCACTATCTTT
AGGTATTATCTACGTGGTAGATTCGACAAGCCGTGATTACATTGAAGAAA
CAAAATCCACTTTATATCATTGCATATTAATTAAAGACGAAGCTCAACAT
TATCCAATTATAGTTTTTGCCAATAAACAGGTGCGATGTCAAAATTTGTA
CAAGGCTTACTCTTAAAATCGGGTTAAATCGAGGGTCTGTAGAAAGACTT
TTTTTCTGAATGCTGATTCACaggtttccaaattttttaaattatacagt
gtcccaaaaaagcggataaataaaatcctcaaaactcattacactctcgg
gtacctaataagcgtccccGCTAATTTTCATTCTTATCCCCCGCTTATTA
TTTTTTGGGaaactgtttttaaaacttcccccttttgccctaattctccT
GTATTAGCatcattttccacccaggacatttttattccaccccctCCCCG
CTTATCAAGTTTTGAGGTTTTTTCTCCTCCtactgcttattccaacccaa
CTACCCGGctaaacatgtttttttataagcattgcacttataagcatgtc
taggctcagatatgggaaaaaattaagcatatacTAAGCATTACCTCGAG
CCTATGAAAAAAAGTATAAGCTATTTTGTAGTATGGATATAAGCAGTATT
ATCTCTGatcctgttttcggatttttatatgcttataaaaaaacacgtaa
GGTACCCGATTGGATTTAGAATAATTGAAGTAAGATTAAACTTCCCGCTC
AATCAATAGATATTAGATTCCCAAGATAATTGAATATCTCATTGAAACGG
CTTTTTTTGGAACACACTGTAGAACTCAAAAGGATTAAGATAAATTGTTA
TCCTCTCTCTAAAAACGGAGATTAAAATAAGGAAATGAGATTGAATAATC
TTTATAATAGGACTTACCGAACGCAATGAGCACATTAGAAATCACCGAAA
AATTAGAATTGAACGAAATCAAAGATCGAAGTTGGCATATCCAAGGAACT
TCTGCTTCGACAGGTGAAGGTCTTTATGAAGGTTTAGACTGGATCTatga
tgaaatacaaaataaaaaacaggATTGAAAGATATGTTTATAGCACATGT
CTTTGGTTAGAATCATTGTGATGAGTTTAACACTGGAGAAGGagcgaaaa
caaaggaaattgacACGGTAGTAAATGTTTTGAAGAGTGTTTTGGCGCCA
CTGCCCGAGCAAGGAAACCTCTTAAACTTCAAGACAGGATGGTGAGTTCA
TCATTAAAAGATTTGTACATACCTATCAGAGGAAAGATACCATCAAATAA
TGTTTCCGTGTGGCTGCAATTTCTATCGGTGATGACCAACCCACCACGTA
GTTTTAGATTTCGCTCCGTGGATTACAACTAGCTTTATATTACAATCAAA
TTTGTTAACCTAGTTCTTGATTTTATTTT

Coding sequence (CDS) from alignment at sc0000108:551944..555872+

>TCONS_00010642 ID=TCONS_00010642|Name=TCONS_00010642|organism=Clytia hemisphaerica|type=CDS|length=2184bp|location=Sequence derived from alignment at sc0000108:551944..555872+ (Clytia hemisphaerica)
ATGCTGAACTCCCTCAGAGATTGTCTTGGTTTGAATAAACGAACTTCTTT
ATTACTACTGGGAATCAATTCAGCTGGCAAAACATCAATTTTGTATCGTT
TATTGCTTGGAGAATTGATGAAAGTTATACCAACAGTAGGTTTCCAATCA
GAAGACATATTACACAATGGAAATTATTTCAGAATTCTTGACATCGGAGG
GGGCTGCAAAATACCTCCATTATGGCGTCATTATTTCGAACATTATCAAG
GTATTATCTACGTGGTAGATTCGACAAGCCGTGATTACATTGAAGAAACA
AAATCCACTTTATATCATTGCATATTAATTAAAGACGAAGCTCAACATTA
TCCAATTATAGTTTTTGCCAATAAACAGGACTTACCGAACGCAATGAGCA
CATTAGAAATCACCGAAAAATTAGAATTGAACGAAATCAAAGATCGAAGT
TGGCATATCCAAGGAACTTCTGCTTCGACAGGTGAAGGTCTTTATGAAGG
TTTAGACTGGATCTatgatgaaatacaaaataaaaaacaggATTGAATGC
TGAACTCCCTCAGAGATTGTCTTGGTTTGAATAAACGAACTTCTTTATTA
CTACTGGGAATCAATTCAGCTGGCAAAACATCAATTTTGTATCGTTTATT
GCTTGGAGAATTGATGAAAGTTATACCAACAGTAGGTTTCCAATCAGAAG
ACATATTACACAATGGAAATTATTTCAGAATTCTTGACATCGGAGGGGGC
TGCAAAATACCTCCATTATGGCGTCATTATTTCGAACATTATCAAGGTAT
TATCTACGTGGTAGATTCGACAAGCCGTGATTACATTGAAGAAACAAAAT
CCACTTTATATCATTGCATATTAATTAAAGACGAAGCTCAACATTATCCA
ATTATAGTTTTTGCCAATAAACAGGACTTACCGAACGCAATGAGCACATT
AGAAATCACCGAAAAATTAGAATTGAACGAAATCAAAGATCGAAGTTGGC
ATATCCAAGGAACTTCTGCTTCGACAGGTGAAGGTCTTTATGAAGGTTTA
GACTGGATCTatgatgaaatacaaaataaaaaacaggATTGAATGCTGAA
CTCCCTCAGAGATTGTCTTGGTTTGAATAAACGAACTTCTTTATTACTAC
TGGGAATCAATTCAGCTGGCAAAACATCAATTTTGTATCGTTTATTGCTT
GGAGAATTGATGAAAGTTATACCAACAGTAGGTTTCCAATCAGAAGACAT
ATTACACAATGGAAATTATTTCAGAATTCTTGACATCGGAGGGGGCTGCA
AAATACCTCCATTATGGCGTCATTATTTCGAACATTATCAAGGTATTATC
TACGTGGTAGATTCGACAAGCCGTGATTACATTGAAGAAACAAAATCCAC
TTTATATCATTGCATATTAATTAAAGACGAAGCTCAACATTATCCAATTA
TAGTTTTTGCCAATAAACAGGACTTACCGAACGCAATGAGCACATTAGAA
ATCACCGAAAAATTAGAATTGAACGAAATCAAAGATCGAAGTTGGCATAT
CCAAGGAACTTCTGCTTCGACAGGTGAAGGTCTTTATGAAGGTTTAGACT
GGATCTatgatgaaatacaaaataaaaaacaggATTGAATGCTGAACTCC
CTCAGAGATTGTCTTGGTTTGAATAAACGAACTTCTTTATTACTACTGGG
AATCAATTCAGCTGGCAAAACATCAATTTTGTATCGTTTATTGCTTGGAG
AATTGATGAAAGTTATACCAACAGTAGGTTTCCAATCAGAAGACATATTA
CACAATGGAAATTATTTCAGAATTCTTGACATCGGAGGGGGCTGCAAAAT
ACCTCCATTATGGCGTCATTATTTCGAACATTATCAAGGTATTATCTACG
TGGTAGATTCGACAAGCCGTGATTACATTGAAGAAACAAAATCCACTTTA
TATCATTGCATATTAATTAAAGACGAAGCTCAACATTATCCAATTATAGT
TTTTGCCAATAAACAGGACTTACCGAACGCAATGAGCACATTAGAAATCA
CCGAAAAATTAGAATTGAACGAAATCAAAGATCGAAGTTGGCATATCCAA
GGAACTTCTGCTTCGACAGGTGAAGGTCTTTATGAAGGTTTAGACTGGAT
CTatgatgaaatacaaaataaaaaacaggATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005961XLOC_005961Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010642-exon-sc0000108-1491911889:551944..552203TCONS_00010642-exon-sc0000108-1491911889:551944..552203Clytia hemisphaericaexon
TCONS_00010642-exon-sc0000108-1510915933:551944..552203TCONS_00010642-exon-sc0000108-1510915933:551944..552203Clytia hemisphaericaexon
TCONS_00010642-exon-sc0000108-1575043694:551944..552203TCONS_00010642-exon-sc0000108-1575043694:551944..552203Clytia hemisphaericaexon
TCONS_00010642-exon-sc0000108-1491911889:552829..552939TCONS_00010642-exon-sc0000108-1491911889:552829..552939Clytia hemisphaericaexon
TCONS_00010642-exon-sc0000108-1510915933:552829..552939TCONS_00010642-exon-sc0000108-1510915933:552829..552939Clytia hemisphaericaexon
TCONS_00010642-exon-sc0000108-1575043694:552829..552939TCONS_00010642-exon-sc0000108-1575043694:552829..552939Clytia hemisphaericaexon
TCONS_00010642-exon-sc0000108-1491911889:554446..554573TCONS_00010642-exon-sc0000108-1491911889:554446..554573Clytia hemisphaericaexon
TCONS_00010642-exon-sc0000108-1510915933:554446..554573TCONS_00010642-exon-sc0000108-1510915933:554446..554573Clytia hemisphaericaexon
TCONS_00010642-exon-sc0000108-1575043694:554446..554573TCONS_00010642-exon-sc0000108-1575043694:554446..554573Clytia hemisphaericaexon
TCONS_00010642-exon-sc0000108-1491911889:555354..555872TCONS_00010642-exon-sc0000108-1491911889:555354..555872Clytia hemisphaericaexon
TCONS_00010642-exon-sc0000108-1510915933:555354..555872TCONS_00010642-exon-sc0000108-1510915933:555354..555872Clytia hemisphaericaexon
TCONS_00010642-exon-sc0000108-1575043694:555354..555872TCONS_00010642-exon-sc0000108-1575043694:555354..555872Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010642-proteinTCONS_00010642-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000108supercontigsc0000108:551944..555872 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.175415	0.555937	0.297921	0.291469	2.42471	1.54218	1.01486	1.74185	1.18255	2.05985	3.15452	0.642541	1.95411	1.69618	0.29882	0.481019	0.526734	0.506143	0.419558	1.26833	0.254402	0.248177	0.150846	0.731417	1.7421	2.64734	0.0601323	0.192524	0.535418	0.297549
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006689Small_GTPase_ARF/SAR
IPR005225Small_GTP-bd_dom
IPR024156Small_GTPase_ARF
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00010642 vs. Swiss-Prot (Human)
Match: ARF3 (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 6.761e-56
Identity = 85/181 (46.96%), Postives = 129/181 (71.27%), Query Frame = 2 
Query:  116 GTMLNSLRDCLGLNKRTSLLLLGINSAGKTSILYRLLLGELMKVIPTVGFQSEDILHNGNYFRILDIGGGCKIPPLWRHYFEHYQGIIYVVDSTSRDYIEETKSTLYHCILIKDEAQHYPIIVFANKQDLPNAMSTLEITEKLELNEIKDRSWHIQGTSASTGEGLYEGLDWIYDEIQNKK 658
            G +  +L   L   K   +L++G+++AGKT+ILY+L LGE++  IPT+GF  E + +    F + D+GG  KI PLWRHYF++ QG+I+VVDS  R+ + E +  L   +L +DE +   ++VFANKQDLPNAM+  EIT+KL L+ ++ R+W+IQ T A++G+GLYEGLDW+ ++++NKK
Sbjct:    2 GNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMR-MLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK 181
The following BLAST results are available for this feature:
BLAST of TCONS_00010642 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARF36.761e-5646.96ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 ... [more]
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