TCONS_00010642-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00010642-protein
Unique NameTCONS_00010642-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length181

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00010642-protein ID=TCONS_00010642-protein|Name=TCONS_00010642-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MLNSLRDCLGLNKRTSLLLLGINSAGKTSILYRLLLGELMKVIPTVGFQS
EDILHNGNYFRILDIGGGCKIPPLWRHYFEHYQGIIYVVDSTSRDYIEET
KSTLYHCILIKDEAQHYPIIVFANKQDLPNAMSTLEITEKLELNEIKDRS
WHIQGTSASTGEGLYEGLDWIYDEIQNKKQD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005961XLOC_005961Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00010642TCONS_00010642Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006689Small_GTPase_ARF/SAR
IPR005225Small_GTP-bd_dom
IPR024156Small_GTPase_ARF
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006689Small GTPase superfamily, ARF/SAR typePRINTSPR00328SAR1GTPBPcoord: 71..96
score: 22.62
coord: 16..39
score: 41.67
coord: 44..68
score: 32.71
coord: 117..138
score: 36.1
IPR006689Small GTPase superfamily, ARF/SAR typePFAMPF00025Arfcoord: 4..174
e-value: 2.8E-53
score: 179.9
NoneNo IPR availableSMARTSM00178sar_sub_1coord: 2..175
e-value: 2.9E-10
score: 50.1
NoneNo IPR availableSMARTSM00177arf_sub_2coord: 1..179
e-value: 8.3E-60
score: 214.7
NoneNo IPR availableGENE3D3.40.50.300coord: 5..181
e-value: 1.2E-37
score: 128.4
NoneNo IPR availableCDDcd00878Arf_Arlcoord: 17..173
e-value: 3.73368E-70
score: 211.281
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 14..145
e-value: 4.7E-15
score: 53.7
IPR024156Small GTPase superfamily, ARF typePROSITEPS51417ARFcoord: 8..175
score: 16.521
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 13..179

Blast
[Close]
BLAST of TCONS_00010642-protein vs. Swiss-Prot (Human)
Match: ARF3 (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 2.187e-59
Identity = 85/177 (48.02%), Postives = 129/177 (72.88%), Query Frame = 0 
Query:    3 NSLRDCLGLNKRTSLLLLGINSAGKTSILYRLLLGELMKVIPTVGFQSEDILHNGNYFRILDIGGGCKIPPLWRHYFEHYQGIIYVVDSTSRDYIEETKSTLYHCILIKDEAQHYPIIVFANKQDLPNAMSTLEITEKLELNEIKDRSWHIQGTSASTGEGLYEGLDWIYDEIQNKK 179
            N L+  +G  K   +L++G+++AGKT+ILY+L LGE++  IPT+GF  E + +    F + D+GG  KI PLWRHYF++ QG+I+VVDS  R+ + E +  L   +L +DE +   ++VFANKQDLPNAM+  EIT+KL L+ ++ R+W+IQ T A++G+GLYEGLDW+ ++++NKK
Sbjct:    7 NLLKSLIG-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMR-MLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK 181
The following BLAST results are available for this feature:
BLAST of TCONS_00010642-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARF32.187e-5948.02ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 ... [more]
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