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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010640 ID=TCONS_00010640|Name=TCONS_00010640|organism=Clytia hemisphaerica|type=transcript|length=1480bp
CTCGAGGCTGGTTTATGAAtacatttcttatttttcttatagacGTTTTC
CTCGTTATATATCATTATGACATAGTTGTTCGTTATTTTTTTATAGTAAG
AATTCAAAACATAGACGAGAATTTTGGCTACTGGtttattttggtgaatt
ttttgAGGAATATTTTGTTTGGTTGAAACTATGGGATACGACGATGatgg
aAGCACGTATTGTTGCACTTCTTTTTTCGCTCTCATTTTCTCCGTCGCCA
TCCCGACATCCATGATCATCGTCGGGTCATACCACATCGATGACTGTCCA
ATGGAACCAATGATTCCTATCTTCATGGTGGTGTCTGGTGTGGCTTGGAT
CTTTCACACTATTTTCACATTCTGCTTCAATATCTGGGGACGCTGGGAAA
GACAGAAGTTGACAAAATGCTCAATGGCGCTCGCAATCCTTCTTTATGTT
TTCTTATTCGCTTGGAATCTCGCAGgTGCATATTGGGTATTCAAAGAATG
GGACAGTTGGGACGATTTGGACGAAGAGAAACAAGCCATTGGTTGCCATA
GAGACacatatttgtttatattctCACTATCCATCATCTATTGGATTCTC
TTCCCATTCAGTTGTCTTGGTTTcttcaaaaaagcaaaagatgTTTATGA
AGAAGTTTAGTGGGGATGGAAATGGTTTATGTTGGCGGATACTTTGTGAA
AACGTCCCTGTGTCATATTAAACATTCAAAGATTTGTTGTGGTGGGTAAC
AAATTCATGATATCCATGATTTAATATTTTATACAGAAGGACGAAAAATA
GCCTGGGCATTTACCACTagttgtattcatgatatgcaccattgcaatgt
cttctgacattacatcacggactcAATATCTGATTggttttaagtgacgt
attgacttattttacgtcacttacaaccaatcagctgttgggtccgtaat
gtaatgtcagaagacattgtaagacattacaatggtgcatatcattgTTT
AcctattaaattcaaaattagcgGCAAACATCTGGTCTTTTTGTGTGCTT
CCGCATAAAAGATCACGTAATGAATATCACAAACCTTTCAACAGgggata
aatatttttatattttttgctgacCTCAAAACTTTCCTTCTCGGATAGTG
CAGACAAGATATGAAGATAAGATTTTTTCCTTACtttcgggtacttaata
gccgtcttccccgctaattaatttttcgaaaattttccacccaggacatt
cttattccaaccgccccccccccgcttattaatttttgggaaaatgtttt
tgaaagttcccttttttgtcctaattcagctgtattagcctccttttcaa
aaatttccacccaagacatttttattccaccccccccccccccgcttatt
aatttttgggaaaatgtttttgaaagttcccttttttgtcctaattcagc
tgtattagcctccttttcaaaaatttccac Run BLAST on NCBI transcript from alignment at sc0000108:443688..448425+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010640 ID=TCONS_00010640|Name=TCONS_00010640|organism=Clytia hemisphaerica|type=transcript|length=4738bp|location=Sequence derived from alignment at sc0000108:443688..448425+ (Clytia hemisphaerica)
CTCGAGGCTGGTTTATGAAtacatttcttatttttcttatagacGTTTTC
CTCGTTATATATCATTATGACATAGTTGTTCGTTATTTTTTTATAGTAAG
AATTCAAAACATAGACGAGAATTTTGGCTACTGGtttattttggtgaatt
ttttgAGGAATATTTTGTTTGGTTGAAACTATGGGATACGACGATGGTAA
GTAGcatataacacccctgtctcagtgcccggtaaaactttttcatacag
ggggatgaaaatttctattaaaATCTCAATATGGGGATAAAACTTAAGCT
AAAAAAATACCAGTGGGATAGTTTTCGGGTGCAATTTCATTGATTTCgtt
gattttaaaaagtttaatttcccagtggatgaaattttggccaaatcttt
ccaatttttttttctctgacaCGGGGATGTCGTAAAGTACAGCGATACGG
GGCAAAACAGTGTCCAAGTATGTTTTTGTTACACCTCTGTCTCAGTTACA
TTCAATAAAAGCTTAATTTGATGCCCATATTTCGATATTCCAAAAAATGC
ACTCGTaattaaatacacccctgtctcgcagccccggtggaattttttct
ctcagtgggacgaaattttggcaaatttttcagTCGGGCTTGGCGGGGGT
TCCATTTGGTCTGTGACACAGTAGTGTGGgaatacaaaaatacaaagaga
TCATCGAATACAAACTGtccacgttttttttttagaagaacgtcaaaaat
tttcgaagccttcggatgttcatagttttttggatttgaagcctaaaaat
gttcttaaaatgttcttatattcagcattttttgagcattttgatgtaat
ttcttaagaaattgcatatttttaagtctccaaagccttagtatgttctt
agaatgttcttaaatttttgggcctcgaagccttatgttcttatatagtt
tgttcttataaaaaaaacgtgtagtagttTAAGAAATTCTGAATTCTGTC
CTGtgtattccaaaaattttcttacgTTATCAATTTACAGTTTACAAAGA
TTGCTACAATTTTTAATCATTCTGAAATAGTTTTGTCTAGAGAACAGTCG
GAATCAGTGAAATGACAAAAGCTTATTCATACTAATCCCCTCTAAGGCGA
TTATTGAACTGTTGGGCtgtcaatttcaaaaaatgtcattGGAACACTTT
ATAAGAACCGTTACAAATTATCAAATCTTGTTACGTTGACAGTTTAACAA
CCTTATTAAACAATAAATTGCTCTTGATGGCAAAAAAAGGTCTGATAAAT
AAACCGGCCCGGTGGAACAACCGTTAAAGtagggaggctgaaggctcaaa
ataagataaaatatgcttggaatttgagaaaaaacttcatttgcttaaaa
gtggggaggctggaGTCTCCCCACTCTCCCCGCTTCCACCGAGCCTGAAA
ACAACCTTAAAAACATGGGCCCCgtcaacggggggggggggccggggggc
catggccccccggcccccccccccgttgaCGGGGCCCATGTTTTTAAGGT
TGTTTTCAGGCTCGGGGggagcgggggggggggggggcgggggggccatg
gcccccccgcccccccccccccccgggggggggggggctgggaGTCCATG
gcccccccactttttggtagaccatgtcatacgtttttaagagttactat
tttaagctgctttgagaccaaatcaaaccacaaaaactattattcccCCA
AAtagatatcgttttaaggtgttttgagggtgtaaaaagtgaaaaatttt
cttcgtcgcccaaccatggtgggcgacaattttttccaaaatgttggccc
cctcactcaaaatggctcggCGGGGCCCATTAAGAAGCTCCATATACCAT
ATATTTAAACAAttagatttttgttttaaaaggaGTATTTTTTATGTCAG
ACATTGCGCCTTTCGCATGAGCACAAATTGCAAAGACAACAAAAAATAAG
CAACATCTTTGGTACAGGTACAGTGGTCAACAACTTTGATTCGTGTACTG
ATGAAAATCAAGGTTCGATTGACACTCAATGTCGTTCACTTGGTATGTGA
ACATATCTTCGCCTATGTCAgtccatgccatgtgaggggaattgggtagt
cggTACAGCAGTCCAGGGTTGCTACCGGGACGATCAATTACGTTAGTATA
GTATAGTTCTGATAAATAGCCTCCTGTATCTAAATCAAATAGAAAAACTA
AAAGGATTTTTTACTGGTGCTACCAATACATGTAGGATACACATTATGAG
GGCCCGTGCAAGGGTTACAAAGTTTCTAATAAAACGGCCTtcatcttttt
ctcttttttttcagatggaAGCACGTATTGTTGCACTTCTTTTTTCGCTC
TCATTTTCTCCGTCGCCATCCCGACATCCATGATCATCGTCGGTAAGTGT
TTTTCACCGCCGGTGAGGATCAGCTAatctcgttccctgcgtattatcgg
cTTACTGACAGTGACAGATAATACCCTAGATTAtattatagtctaagaca
aatcactatctaagaaataagcccaaatctgaagaaaattcgcaaacggg
atTTTTGCTGAAAGAGTTACAGTCTttagagtttgccagtcttcgaaact
ctcctgCCGATTTTTTCCGTATGCCACCATAACACCATACCGACATATTT
TCCCGcatttactatcactgtaacaaACAATAACATCGTCAAATAATACC
CTGACATTGTCTGCTTTTTGAATGaatataattcaaaaataaaacgtcag
atttcatttgttcctggATCTGCACTACCGTTCACTTATGTAAcgataca
tttttttattgtgTATTGTTTTCCATCTGAGGGAGAAAACTCGCATCAGC
CTACACCAGGGTATTCTATCAGtgacgtaaataaagcctaggATACACGG
GGATGAGGTTGAGGATCGTCGGTAGCAAGTAATTCAGTATGCGCCTTAAG
TGTTCCATCTCATGACCCAGAACTAAGCAATCTTAAGTTTATCCAACCTC
AATCCCTGCGTATTAAATTCGaaacctctacaaaaccaccaGTGTGTATC
CAAAAAAACTTCCCGTAATTTTGACATATGCATATATATGAAGAGATTTA
tgataaaatggtaaaaaataatAACCCAAGACTCTTATTTTCCCGTTTAG
GGTCATACCACATCGATGACTGTCCAATGGAACCAATGATTCCTATCTTC
ATGGTGGTGTCTGGTGTGGCTTGGATCTTTCACACTATTTTCACATTCTG
CTTCAATATCTGGGGACGCTGGGAAAGACAGAAGTTGACAAAATGCTCAA
TGGCGCTCGCAATCCTTCTTTATGTTTTCTTATTCGCTTGGAATCTCGCA
GGTATTAACTATTTTTCAGTAATGACGTAGTATACAGAATCATCCTCAAA
ACAATAGCTCTGGTAACCCTTTTTTTTCACCGATAGGACAGTGTGACTTC
TGACCCCCGGGCAGCAGGTCTAATCCCCTAAACATGCATCggttaccccc
cccccccccccggtaattCTAAATTATCCCCAAGCGGAGTAACTTTACCC
CCAAACTAAGCAAGTTACCACCTCCCTGCCAAGAGAAGgcattttaacta
cacctcggacaatatatcctccatccccatatacgaacattttttggaaa
agcccattcgattttcttcttcattttcttcaggTGCATATTGGGTATTC
AAAGAATGGGACAGTTGGGACGATTTGGACGAAGAGAAACAAGCCATTGG
TTGCCATAGAGACacatatttgtttatattctCACTATCCATCATCTATT
GGATTCTCTTCCCATTCAGTTGTCTTGGTTTcttcaaaaaagcaaaagat
gTTTATGAAGAAGTTTAGTGGGGATGGAAATGGTTTATGTTGGCGGATAC
TTTGTGAAAACGTCCCTGTGTCATATTAAACATTCAAAGATTTGTTGTGG
TGGGTAACAAATTCATGATATCCATGATTTAATATTTTATACAGAAGGAC
GAAAAATAGCCTGGGCATTTACCACTagttgtattcatgatatgcaccat
tgcaatgtcttctgacattacatcacggactcAATATCTGATTggtttta
agtgacgtattgacttattttacgtcacttacaaccaatcagctgttggg
tccgtaatgtaatgtcagaagacattgtaagacattacaatggtgcatat
cattgTTTAcctattaaattcaaaattagcgGCAAACATCTGGTCTTTTT
GTGTGCTTCCGCATAAAAGATCACGTAATGAATATCACAAACCTTTCAAC
AGgggataaatatttttatattttttgctgacCTCAAAACTTTCCTTCTC
GGATAGTGCAGACAAGATATGAAGATAAGATTTTTTCCTTACtttcgggt
acttaatagccgtcttccccgctaattaatttttcgaaaattttccaccc
aggacattcttattccaaccgccccccccccgcttattaatttttgggaa
aatgtttttgaaagttcccttttttgtcctaattcagctgtattagcctc
cttttcaaaaatttccacccaagacatttttattccaccccccccccccc
cgcttattaatttttgggaaaatgtttttgaaagttcccttttttgtcct
aattcagctgtattagcctccttttcaaaaatttccac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010640-exon-sc0000108-1491911889:443688..443883 | TCONS_00010640-exon-sc0000108-1491911889:443688..443883 | Clytia hemisphaerica | exon |
| TCONS_00010640-exon-sc0000108-1510915933:443688..443883 | TCONS_00010640-exon-sc0000108-1510915933:443688..443883 | Clytia hemisphaerica | exon |
| TCONS_00010640-exon-sc0000108-1575043694:443688..443883 | TCONS_00010640-exon-sc0000108-1575043694:443688..443883 | Clytia hemisphaerica | exon |
| TCONS_00010640-exon-sc0000108-1491911889:446052..446129 | TCONS_00010640-exon-sc0000108-1491911889:446052..446129 | Clytia hemisphaerica | exon |
| TCONS_00010640-exon-sc0000108-1510915933:446052..446129 | TCONS_00010640-exon-sc0000108-1510915933:446052..446129 | Clytia hemisphaerica | exon |
| TCONS_00010640-exon-sc0000108-1575043694:446052..446129 | TCONS_00010640-exon-sc0000108-1575043694:446052..446129 | Clytia hemisphaerica | exon |
| TCONS_00010640-exon-sc0000108-1491911889:446888..447088 | TCONS_00010640-exon-sc0000108-1491911889:446888..447088 | Clytia hemisphaerica | exon |
| TCONS_00010640-exon-sc0000108-1510915933:446888..447088 | TCONS_00010640-exon-sc0000108-1510915933:446888..447088 | Clytia hemisphaerica | exon |
| TCONS_00010640-exon-sc0000108-1575043694:446888..447088 | TCONS_00010640-exon-sc0000108-1575043694:446888..447088 | Clytia hemisphaerica | exon |
| TCONS_00010640-exon-sc0000108-1491911889:447421..448425 | TCONS_00010640-exon-sc0000108-1491911889:447421..448425 | Clytia hemisphaerica | exon |
| TCONS_00010640-exon-sc0000108-1510915933:447421..448425 | TCONS_00010640-exon-sc0000108-1510915933:447421..448425 | Clytia hemisphaerica | exon |
| TCONS_00010640-exon-sc0000108-1575043694:447421..448425 | TCONS_00010640-exon-sc0000108-1575043694:447421..448425 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000108 | supercontig | sc0000108:443688..448425 + |
Blast
The following BLAST results are available for this feature:
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