TCONS_00010617 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010617
Unique NameTCONS_00010617
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length296

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010617 ID=TCONS_00010617|Name=TCONS_00010617|organism=Clytia hemisphaerica|type=transcript|length=296bp
tttgaaattaaattaaaggTCAAAAGAATCACATCATGGAAGAACCTTCA
ATGTTAAAACAGAGGCCATCCTCAAGCCATACTCAAGATACTTCTCATAT
TATAATGAGCACTTTTCGAGACTTATTCAGTCAAGGTGGTATGCGACAAG
ATCTAATAGAAAATCTTTCAGTTAGCAAAGGAGGGGAAAATGTGTATCAT
GACAAATATGTTGAAAAGCTGCAAAACATTCATGAGAGATGGGCGACCAA
AATTACAGCAATAGATGACATGATTCAACACCTGGACAAAGCAAAA
Run BLAST on NCBI

transcript from alignment at sc0000108:170439..171056+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010617 ID=TCONS_00010617|Name=TCONS_00010617|organism=Clytia hemisphaerica|type=transcript|length=618bp|location=Sequence derived from alignment at sc0000108:170439..171056+ (Clytia hemisphaerica)
tttgaaattaaattaaaggTCAAAAGAATCACATCATGGAAGAACCTTCA
ATGTTAAAACAGAGGCCATCCTCAAGCCATACTCAAGATACTTCTCATAT
TATAATGAGCACTTTTCGAGACTTATTCAGTCAAGGTGGTATGCGACAAG
ATCTAATAGAAAATCTTTCAGTTAGCAAAGGAGGGGAAAATGTGTATCAT
GACAAATATGTTGAAAAGCTGCAAAACGTAAGTCACTTTTATTTGAAtgt
ttgtatattttttcttataattttgctgttcaaaatttctttttaaattt
aaataaaaataaaaatcaaataaaagaatgctGTCTAAATGGTACAACTC
CATAATTTTAAAGATACCATTTATAGTCTTCAATTGCTGTGATATATTCT
GTCGGATATTCTTTTTAAAGTACTTATCAAACAGCACTCTCATTACATCt
agattttattgttttctacagtaaaaattgtatattttgttTCGTTGAAT
TGTTTATACACTTTGAAAATAAACTATAGAGAAAATGAATATCTTTCAGA
TTCATGAGAGATGGGCGACCAAAATTACAGCAATAGATGACATGATTCAA
CACCTGGACAAAGCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005951XLOC_005951Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010617-exon-sc0000108-1491911889:170439..170665TCONS_00010617-exon-sc0000108-1491911889:170439..170665Clytia hemisphaericaexon
TCONS_00010617-exon-sc0000108-1510915933:170439..170665TCONS_00010617-exon-sc0000108-1510915933:170439..170665Clytia hemisphaericaexon
TCONS_00010617-exon-sc0000108-1575043694:170439..170665TCONS_00010617-exon-sc0000108-1575043694:170439..170665Clytia hemisphaericaexon
TCONS_00010617-exon-sc0000108-1491911889:170988..171056TCONS_00010617-exon-sc0000108-1491911889:170988..171056Clytia hemisphaericaexon
TCONS_00010617-exon-sc0000108-1510915933:170988..171056TCONS_00010617-exon-sc0000108-1510915933:170988..171056Clytia hemisphaericaexon
TCONS_00010617-exon-sc0000108-1575043694:170988..171056TCONS_00010617-exon-sc0000108-1575043694:170988..171056Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000108supercontigsc0000108:170439..171056 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.04616	4.38698	3.22449	1.37505e-08	3.10732	6.57279	0.000107674	2.82841	2.87438	4.86238	1.27125	5.03488	0.74103	1.51815	0.986821	0.644193	2.2724	1.24647	2.64379	0.0295617	0	0	0.959215	0.677806	0.000639488	7.65936	2.69062	0	0.384064	1.1869
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010617 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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