TCONS_00010611 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010611
Unique NameTCONS_00010611
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length619

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010611 ID=TCONS_00010611|Name=TCONS_00010611|organism=Clytia hemisphaerica|type=transcript|length=619bp
cagacagacagaaaaATTATCTCCACAATACGACAATAAtagcaaaaatt
gaaagaacACACTCATGCAGTCGTACGGAACCATTTTAGGGCTGTTTTTA
GAAGGATATTTACCGGGCTGTTTGTTTTGAGCTTTTAACATCTTGACGAA
GCgccaaataacaaaaataatgacaactttttgaaaaagttgtaaaTAAT
GACAATTTGGTGTGGCAGTAGACATGCGGGCGGCTTGGGGTAAACATAAC
ATTAGATAGATTTCATCAGCCTAAGGGCAGCAGAAGGGTAGCTACCTTTT
TTGAGCCACCCACTaaggttttgaaaaatcagaaaattaaatttcagtcc
gactaagggtaggaaaaataggaaaattttaactttttgcccccagtcCA
GAAAGACTGAAATTTGGCCACGTTAGTCCagcaataagggtcgtaaaatt
ggcaaaattttcttttttaatcgtccttttagtcccgctaagccTAAGGG
TCCAAGGGTGGCACATCCCccgtcagcttgcaaccctaTTACAGTAACTT
GTTCTAATGTTGACATCTGgaaccctttttatcagctgaaattgatagaa
aggttgaaactgttttttt
Run BLAST on NCBI

transcript from alignment at sc0000107:604836..605454

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010611 ID=TCONS_00010611|Name=TCONS_00010611|organism=Clytia hemisphaerica|type=transcript|length=619bp|location=Sequence derived from alignment at sc0000107:604836..605454 (Clytia hemisphaerica)
aaaaaaacagtttcaacctttctatcaatttcagctgataaaaagggttc
CAGATGTCAACATTAGAACAAGTTACTGTAAtagggttgcaagctgacgg
GGGATGTGCCACCCTTGGACCCTTAggcttagcgggactaaaaggacgat
taaaaaagaaaattttgccaattttacgacccttattgctGGACTAACGT
GGCCAAATTTCAGTCTTTCTGgactgggggcaaaaagttaaaattttcct
atttttcctacccttagtcggactgaaatttaattttctgatttttcaaa
accttAGTGGGTGGCTCAAAAAAGGTAGCTACCCTTCTGCTGCCCTTAGG
CTGATGAAATCTATCTAATGTTATGTTTACCCCAAGCCGCCCGCATGTCT
ACTGCCACACCAAATTGTCATTAtttacaactttttcaaaaagttgtcat
tatttttgttatttggcGCTTCGTCAAGATGTTAAAAGCTCAAAACAAAC
AGCCCGGTAAATATCCTTCTAAAAACAGCCCTAAAATGGTTCCGTACGAC
TGCATGAGTGTgttctttcaatttttgctaTTATTGTCGTATTGTGGAGA
TAATttttctgtctgtctg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005946XLOC_005946Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010611-exon-sc0000107-1491911889:604836..605454TCONS_00010611-exon-sc0000107-1491911889:604836..605454Clytia hemisphaericaexon
TCONS_00010611-exon-sc0000107-1510915933:604836..605454TCONS_00010611-exon-sc0000107-1510915933:604836..605454Clytia hemisphaericaexon
TCONS_00010611-exon-sc0000107-1575043694:604836..605454TCONS_00010611-exon-sc0000107-1575043694:604836..605454Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000107supercontigsc0000107:604836..605454 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.168763	0.0985244	0	0.116795	0.0924028	0.667496	0.730222	0.0733334	0.544148	0	0.231498	0.116001	0.300127	0.0986199	0	0.262342	0.200124	0.554347	0.290321	0.588907	0	0	0.090424	0	0.497491	0	0.759767	0.291019	0.0986837
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010611 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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