TCONS_00010598 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010598
Unique NameTCONS_00010598
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length461

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010598 ID=TCONS_00010598|Name=TCONS_00010598|organism=Clytia hemisphaerica|type=transcript|length=461bp
GCAATAAGGAGTAAATTCCAAATTGTTATGATCGTTTGACCATAATGTAA
CCACAAAAATAACGAGAGGAAAATCATGAGATACTATTCGTCATATCGTG
TAATGTATTTCAGTTGGTATTGTTCTCGTTCTCTTTTAAAAATCTTGTAT
AATGTCTTTGCTATCTTTGCTGTGAAAGTTCAAGATAAAACTCTTGTATA
CTGTCTTAGAAATTTTTGTGATGAAAACTCAAGATATCCCAATCATCATT
TCCCAACTAATTATTGTCGAGGACTGGAAAACCTTCAAAATTATCTGAGA
CTTACAATAACAAAACAGTATAAAAACTATAGTACACACTACAGAAACTC
TGACATGTGAAAATAATTCAATTAAAGTAAAATCTTAAACGAAAAGATGA
ACACAGTAATGCTGCTGTGActtcttttaataaaaaatgtcAAGCAAGCA
AAGCAAGTCAG
Run BLAST on NCBI

transcript from alignment at sc0000107:113646..114106

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010598 ID=TCONS_00010598|Name=TCONS_00010598|organism=Clytia hemisphaerica|type=transcript|length=461bp|location=Sequence derived from alignment at sc0000107:113646..114106 (Clytia hemisphaerica)
CTGACTTGCTTTGCTTGCTTgacattttttattaaaagaagTCACAGCAG
CATTACTGTGTTCATCTTTTCGTTTAAGATTTTACTTTAATTGAATTATT
TTCACATGTCAGAGTTTCTGTAGTGTGTACTATAGTTTTTATACTGTTTT
GTTATTGTAAGTCTCAGATAATTTTGAAGGTTTTCCAGTCCTCGACAATA
ATTAGTTGGGAAATGATGATTGGGATATCTTGAGTTTTCATCACAAAAAT
TTCTAAGACAGTATACAAGAGTTTTATCTTGAACTTTCACAGCAAAGATA
GCAAAGACATTATACAAGATTTTTAAAAGAGAACGAGAACAATACCAACT
GAAATACATTACACGATATGACGAATAGTATCTCATGATTTTCCTCTCGT
TATTTTTGTGGTTACATTATGGTCAAACGATCATAACAATTTGGAATTTA
CTCCTTATTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005933XLOC_005933Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010598-exon-sc0000107-1491911889:113646..114106TCONS_00010598-exon-sc0000107-1491911889:113646..114106Clytia hemisphaericaexon
TCONS_00010598-exon-sc0000107-1510915933:113646..114106TCONS_00010598-exon-sc0000107-1510915933:113646..114106Clytia hemisphaericaexon
TCONS_00010598-exon-sc0000107-1575043694:113646..114106TCONS_00010598-exon-sc0000107-1575043694:113646..114106Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000107supercontigsc0000107:113646..114106 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.140785	0	0.318807	0.935709	0	0.150027	1.08601	0.847254	0.118637	0	1.71161	0.0937618	0.280894	0.194474	0.479653	0.514741	0.739806	0.758277	3.59177	0.156606	1.76954	2.78854	1.12995	2.05457	0.906926	1.07921	6.1774	3.50237	0.62504	0.636817
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010598 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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