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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010584 ID=TCONS_00010584|Name=TCONS_00010584|organism=Clytia hemisphaerica|type=transcript|length=3730bpRun BLAST on NCBI protein sequence of TCONS_00010584-protein >TCONS_00010584-protein ID=TCONS_00010584-protein|Name=TCONS_00010584-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1116bp MHSSRENQENLLEVVLAGGPPWGFTLTGGSEFGSKLYVKKVTEENKAIEGRun BLAST on NCBI transcript from alignment at sc0000107:480946..528310- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010584 ID=TCONS_00010584|Name=TCONS_00010584|organism=Clytia hemisphaerica|type=transcript|length=47365bp|location=Sequence derived from alignment at sc0000107:480946..528310- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000107:480946..528310- >TCONS_00010584 ID=TCONS_00010584|Name=TCONS_00010584|organism=Clytia hemisphaerica|type=CDS|length=30159bp|location=Sequence derived from alignment at sc0000107:480946..528310- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010584 vs. Swiss-Prot (Human)
Match: SHRM2 (Protein Shroom2 OS=Homo sapiens GN=SHROOM2 PE=1 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 1.612e-26 Identity = 72/191 (37.70%), Postives = 116/191 (60.73%), Query Frame = 1
Query: 2950 QEESLPSTPTSID-DLDNEKSKLIDSMREKINELRDQEQEIAEEIKMNEELGKKVLGMVESKATQSEFSKYELFIGELNKIVALLLSLTQRLHRYEMMLQDLDMTNESDKLKKDGLISKIDKLKSQHEEACYLRDVNDKRGDNVSNFLAKYCDEEEFSDFQYYVDMKSQLALMQSEIREKVKLGEERLKAL 3519
Q+E + + +D DL +K +LI+S+ K+ LR+ + + E+++ N LG +V +V+ SEF K+ +FIG+L+K+V LLLSL+ RL R E L +LD + + + L+ K L QHE+A L++ D+R V + LA Y EE +D++++V MKS L + Q E+ +K+ LGEE+LK L
Sbjct: 1418 QQEHEEDSGSDLDHDLSVKKQELIESISRKLQVLREARESLLEDVQANTVLGAEVEAIVKGVCKPSEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNNLD--DGASPGDRQSLLEKQRVLIQQHEDAKELKENLDRRERIVFDILANYLSEESLADYEHFVKMKSALIIEQRELEDKIHLGEEQLKCL 1606 The following BLAST results are available for this feature:
BLAST of TCONS_00010584 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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