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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00010584-protein ID=TCONS_00010584-protein|Name=TCONS_00010584-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1116bp
MHSSRENQENLLEVVLAGGPPWGFTLTGGSEFGSKLYVKKVTEENKAIEG
ELCVGDEILSVNGVQCTSRANAIQMVRNIDDQLHLNIARWKNVPSDLQSR
SSSSASSSIYDSMAETMSDLSQSYYSLKRNSIQTKNFNNNESQNNMAATS
KPKYTIKTYNSKGGGDHSTTTTITATTSPRERSVDTYNERSVDTQPQATH
RITASQPHRQKVTVKMVPAASRTSTTVYPSNTSKVAHTQQRPASADPLKS
TGSESGIDETDAVERESVQKVSKARAMFENLSSSKLPVEQSKPQRPKLKS
WNSGGALLEETSTGEKKWNVTKRNVSPKPNNNSSNELQPPVHKHSRSLPI
EIAGQDFAAAYAAYRQAAITATSTNDTERPKSAFVYTEPERDNVPAVPQR
YSQSDMLKNYNRSRASHGHLDFPLDVNSRTSKSTEDLISSNDAKRASSTT
PPAVKTGSANELRQAANKYHKELYKNYPKFRHSISGKEAAVPKYPRRLSE
DSFSRGEPLRATIATTHVTNNSRTPRSLSADGPLAFNLGGENSMMSRLLQ
GQQNAAATLMKIDEEAKRNQQIQQQQQSNDTNNNSNNSPVLIRSNSVGGA
NMYYHRRQMEPEPSAQVLPHVEQEFETLHIEDRKERNTPSPSINTTGNSD
TLDDNRTTPVKVTTSAHSSPQQHAITPTTSNNNSADNSFDTGFEPAQYAD
IDATNENILLASSRRTPDLDSQKPMAVTPELTHLQNYMHSKDSSTDSAVY
VTPKDHVNHHVTAYSGESTGSLNDDFENHNSLQLDSNQHTEENNFNTLIS
HDEALHENEVEKEKEKPQRTINRKKKDSGPISRNSSCVSTDSTTSTATVD
SGIVVRLDSSPRDSPISSSQYYSNKDLSTSRETLDDDVRALEESEKNNAT
AHCYGDDDSILPNDGLQEESLPSTPTSIDDLDNEKSKLIDSMREKINELR
DQEQEIAEEIKMNEELGKKVLGMVESKATQSEFSKYELFIGELNKIVALL
LSLTQRLHRYEMMLQDLDMTNESDKLKKDGLISKIDKLKSQHEEACYLRD
VNDKRGDNVSNFLAKYCDEEEFSDFQYYVDMKSQLALMQSEIREKVKLGE
ERLKALEQTGSDWGIG Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 928..969 |
| None | No IPR available | COILS | Coil | Coil | coord: 1089..1109 |
| None | No IPR available | COILS | Coil | Coil | coord: 874..894 |
| None | No IPR available | GENE3D | 2.30.42.10 | | coord: 8..91
e-value: 1.1E-13
score: 50.5 |
| None | No IPR available | GENE3D | 1.20.120.560 | | coord: 755..1045
e-value: 2.4E-4
score: 21.1 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 567..595 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 629..687 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 284..345 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 416..459 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 159..266 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 805..931 |
| None | No IPR available | CDD | cd00992 | PDZ_signaling | coord: 11..88
e-value: 3.75366E-13
score: 65.6658 |
| IPR001478 | PDZ domain | SMART | SM00228 | pdz_new | coord: 20..91
e-value: 2.6E-7
score: 40.3 |
| IPR001478 | PDZ domain | PFAM | PF00595 | PDZ | coord: 19..87
e-value: 1.3E-8
score: 34.9 |
| IPR001478 | PDZ domain | PROSITE | PS50106 | PDZ | coord: 11..91
score: 13.752 |
| IPR001478 | PDZ domain | SUPERFAMILY | 50156 | PDZ domain-like | coord: 8..92 |
| IPR014799 | Apx/Shrm Domain 2 | PFAM | PF08687 | ASD2 | coord: 889..1108
e-value: 4.4E-42
score: 144.6 |
| IPR014799 | Apx/Shrm Domain 2 | PROSITE | PS51307 | ASD2 | coord: 826..1111
score: 20.932 |
Blast
BLAST of TCONS_00010584-protein vs. Swiss-Prot (Human)
Match: SHRM2 (Protein Shroom2 OS=Homo sapiens GN=SHROOM2 PE=1 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 3.942e-30 Identity = 69/177 (38.98%), Postives = 109/177 (61.58%), Query Frame = 0
Query: 930 DLDNEKSKLIDSMREKINELRDQEQEIAEEIKMNEELGKKVLGMVESKATQSEFSKYELFIGELNKIVALLLSLTQRLHRYEMMLQDLDMTNESDKLKKDGLISKIDKLKSQHEEACYLRDVNDKRGDNVSNFLAKYCDEEEFSDFQYYVDMKSQLALMQSEIREKVKLGEERLKAL 1106
DL +K +LI+S+ K+ LR+ + + E+++ N LG +V +V+ SEF K+ +FIG+L+K+V LLLSL+ RL R E L +LD + + + L+ K L QHE+A L++ D+R V + LA Y EE +D++++V MKS L + Q E+ +K+ LGEE+LK L
Sbjct: 1432 DLSVKKQELIESISRKLQVLREARESLLEDVQANTVLGAEVEAIVKGVCKPSEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNNLD--DGASPGDRQSLLEKQRVLIQQHEDAKELKENLDRRERIVFDILANYLSEESLADYEHFVKMKSALIIEQRELEDKIHLGEEQLKCL 1606
The following BLAST results are available for this feature:
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