TCONS_00010564 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010564
Unique NameTCONS_00010564
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length540

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010564 ID=TCONS_00010564|Name=TCONS_00010564|organism=Clytia hemisphaerica|type=transcript|length=540bp
TCGCTGCCAAAGATTTCGTGTACCTGTACTTGAAATCATTAAAAGCTTCG
AAATCTCGTGTGACCttcgattttgtattttttgagAAAGCAATCAAAGA
TGTTTCGTATCCCAGGAAAAGAAGGAAGTCATGCTGAAAAAGAGGCAGAA
AAAGCCAGAGCAAAACAACAAGTCAAGCAACAATTTTTCTTATTCGTTGG
GATTGTCGCTCTTCTTCGAGTTGCTCCTTATGTTGCCAATCAATTGTCGT
GAAATACCAAGGAATGATATTAATCTTCAGGATGAAAGATTTACAGAAGT
TGTGTGAGACAGACGGGACAGGCAGACTACAGAATATATTCAAAAGCTTA
ATTTTGCAACGAtggattttttttagaataagcttgtatttttatatcaa
attatccaaaatatattaatattgtacaatatatacaaaactataCAAAA
ATATCTACAGTATCTGTCTATTTTTAAATGGGTTTGCAttgtttctgtaa
tttgacttCTCTCTCAAAAAAAATTGCGCAAAGCCAAAAT
Run BLAST on NCBI

transcript from alignment at sc0000107:374113..374952-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010564 ID=TCONS_00010564|Name=TCONS_00010564|organism=Clytia hemisphaerica|type=transcript|length=840bp|location=Sequence derived from alignment at sc0000107:374113..374952- (Clytia hemisphaerica)
TCGCTGCCAAAGATTTCGTGTACCTGTACTTGAAATCATTAAAAGCTTCG
AAATCTCGTGTGACCTTCGATTTTGTATTTTTTGAGGTGAGCACACACAA
TCTCTGTTTTTTTAGTTTTATTTCCTCCTTGGTTTTTATGTGAGGCATCC
AAATATGTAAATTTGTGCTTTGTTAAAACATGTTATATATTTCTTACATA
TTTCAGAAAGCAATCAAAGATGTTTCGTATCCCAGGAAAAGAAGGAAGTC
ATGCTGAAAAAGAGGCAGAAAAAGCCAGAGCAAAACAACAAGTCAAGCAA
CAATTTTTCTTATTCGTTGGGATTGTCGCTCTTCTTCGAGTTGGTATGTA
GTGTCTTTGTTTCTACAACGATTGTTTCTCCACTCTTTTATTTTATTTCT
ATTTGATCGTCAATCATCATCTTCTTAACACATCAAATCCTACAACAAAA
CCGCTGCCGCCCCCTCCCCTGTAATTTCAATTTCTCTCAGTATCATTTAT
ACTCTTTAAATTTGTTTTTACAGCTCCTTATGTTGCCAATCAATTGTCGT
GAAATACCAAGGAATGATATTAATCTTCAGGATGAAAGATTTACAGAAGT
TGTGTGAGACAGACGGGACAGGCAGACTACAGAATATATTCAAAAGCTTA
ATTTTGCAACGATGGATTTTTTTTAGAATAAGCTTGTATTTTTATATCAA
ATTATCCAAAATATATTAATATTGTACAATATATACAAAACTATACAAAA
ATATCTACAGTATCTGTCTATTTTTAAATGGGTTTGCATTGTTTCTGTAA
TTTGACTTCTCTCTCAAAAAAAATTGCGCAAAGCCAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005919XLOC_005919Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010564-exon-sc0000107-1575043694:374867..374952TCONS_00010564-exon-sc0000107-1575043694:374867..374952Clytia hemisphaericaexon
TCONS_00010564-exon-sc0000107-1575043694:374610..374746TCONS_00010564-exon-sc0000107-1575043694:374610..374746Clytia hemisphaericaexon
TCONS_00010564-exon-sc0000107-1575043694:374113..374429TCONS_00010564-exon-sc0000107-1575043694:374113..374429Clytia hemisphaericaexon
TCONS_00010564-exon-sc0000107-1510915933:374867..374952TCONS_00010564-exon-sc0000107-1510915933:374867..374952Clytia hemisphaericaexon
TCONS_00010564-exon-sc0000107-1510915933:374610..374746TCONS_00010564-exon-sc0000107-1510915933:374610..374746Clytia hemisphaericaexon
TCONS_00010564-exon-sc0000107-1510915933:374113..374429TCONS_00010564-exon-sc0000107-1510915933:374113..374429Clytia hemisphaericaexon
TCONS_00010564-exon-sc0000107-1491911889:374867..374952TCONS_00010564-exon-sc0000107-1491911889:374867..374952Clytia hemisphaericaexon
TCONS_00010564-exon-sc0000107-1491911889:374610..374746TCONS_00010564-exon-sc0000107-1491911889:374610..374746Clytia hemisphaericaexon
TCONS_00010564-exon-sc0000107-1491911889:374113..374429TCONS_00010564-exon-sc0000107-1491911889:374113..374429Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000107supercontigsc0000107:374113..374952 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
189.715	187.092	98.786	99.6149	124.018	93.7744	88.1928	98.304	104.592	88.0478	71.2359	61.6755	46.62	52.561	58.7322	55.4521	152.798	143.417	28.0289	35.5301	105.082	108.273	162.467	132.511	73.3048	73.331	53.9379	42.0359	100.288	82.6631
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010564 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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