TCONS_00010560 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010560
Unique NameTCONS_00010560
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length894

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010560 ID=TCONS_00010560|Name=TCONS_00010560|organism=Clytia hemisphaerica|type=transcript|length=894bp
CAAAGACTGGACCCCTTACCTTATATGGGTAGTAATGATCTCCTTCGCCT
GATGTTTTCTGCAGAGCTGATTCTGTATAAAAAGGGTCCCCTTTGAGACT
GAAGAACACATTAACATCTTCAGTTTGAACAAACTGTTTGACTCGGTAAA
TCAACTACAGTATCAATCATGTTACGTTTTATATTGGTCCTGGCAACAAT
CATCAGTGCAATTTACGCACAAAAATGTGGAGTTTCCAAAGTTCCACAAA
GCCGTGTTGTGAATGGAGTTGAAGCACCACAAGGAGCTTGGCCATGGATC
GTTTCATTGCAAACACGAAATGGATTCCATTACTGTGGTGGTACCATCCT
TTCACCGACTTGGATCCTGACAGCAAGTCATTGTGTAGATAACAACCCGA
CAGCAATCGCCGTAGTAGCGGGCGCACATAACATCAAAGCTATGGAATGG
TCACAACAAAAACAATGGGCTAAAAGATACATCCAAAATCCAAACTACAA
GAGAAGTGATCTTTATGCTGATATTGCCTTGATTGAATTATGGAAACCTT
TAATATTCAATGATAGAGTAAGCAGAGCATGTATACCGGGATTTAATCAG
TATCCACCTGCAGGGATATGGTGTTATATTGCTGGCTGGGGACGAATCCA
ACACGATCCAAGAATTGCACCTGACAAATTACAACAAGCAAGACTTCCTA
TCTTGAAACAGCACGACAAATACGAACACATCTTAGCAGGGTTTGGTGTC
CAAGGAAAAGCAAACGCATGCCAAGGTGATTCTGGGGGTCCACTGATGTG
TAAGACCACATCAGGCCAATGGATGGTACAAGGCGCCGCAAGCTGGGTCC
TCAAAGGCTGTCACACAGTCAGTGCTTATACACCACTAACANat
Run BLAST on NCBI

transcript from alignment at sc0000107:346788..349726-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010560 ID=TCONS_00010560|Name=TCONS_00010560|organism=Clytia hemisphaerica|type=transcript|length=2939bp|location=Sequence derived from alignment at sc0000107:346788..349726- (Clytia hemisphaerica)
CAAAGACTGGACCCCTTACCTTATATGGGTAGTAATGATCTCCTTCGCCT
GATGTTTTCTGCAGAGCTGATTCTGTATAAAAAGGGTCCCCTTTGAGACT
GAAGAACACATTAACATCTTCAGTTTGAACAAACTGTTTGACTCGGTAAA
TCAACTACAGTATCAATCATGTTACGTTTTATATTGGTCCTGGCAACAAT
CATCAGTGCAATTTGTAAGTAAACCATTTACAAGAGACTCCCAAAAACAA
CTTTCTTACCAAACGAATGGACACAAAAAGACTGGGAAGATTTAGATCTT
GTTGAGATTATAAACTTGTGTTTGAGATGCTGGCTTATTAAATCTGACCA
GACAGAGTGCCGTCTATATTTTCATTATAAATTATAACACAAGTGAAAAA
GTTGAAGTATCTTATCAATTTTCCTTCCAACTTTTCATCTTTTAGACGCA
CAAAAATGTGGAGTTTCCAAAGTTCCACAAAGCCGTGTTGTGAATGGAGT
TGAAGCACCACAAGGAGCTTGGCCATGGATCGTTTCATTGCAAACACGAA
ATGGATTCCATTACTGTGGTGGTACCATCCTTTCACCGACTTGGGTAAAT
TTGGATATTTAGCTTTATAAAAGATTTTCCTAAGCCTTGTAATCATAAAC
CTCAGAATCCCGAAGACTCCTTTAAGGATGATCAAGGAGTCACTCTCCTC
CCACTCAAATTACCCATAAGCTTTCAGTTTTATGAAGAGAGAATCGAGTC
TAATCGCTAAGAGCACCTTTAAATATTTCAAAAAATAACCGCGCGGCAAT
TGGCGGCTACGGTCGAAAAGGTGTATCGTAGGGCTGTTAAAAGATTTTAA
GTAACATCATTTTATCAATAGATCCTGACAGCAAGTCATTGTGTAGATAA
CAACCCGACAGCAATCGCCGTAGTAGCGGGCGCACATAACATCAAAGCTA
TGGAATGGTCACAACAAAAACAATGGGCTAAAAGATACATCCAAAATCCA
AACTACAAGAGAAGTGATCTTTATGCTGATATTGCCTTGATTGAATTATG
GAAACCTTTAATATTCAATGATAGAGTAAGCAGAGCATGTATACCGGGAT
TTAATCAGTATCCACCTGCAGGGATATGGTGTTATATTGCTGGTAAGAAT
TTTCCTTCATATCAGTTCTTTTAAACAATTAAATAGTATACAAAAAATTT
CTGTGAAAGTGCATCTAGTTTTAGAGCTGACTATTCAAACCATATTGCTA
CTTGTTTTTGTTCGGTTTAATTTCAAAACAGTAGAGTCCCGCGGTAGTTA
GCCAGAAATGGAAAAAAGCACAACGGGAATAGTCAACTCTAACCTTATTA
TGGAAAAACCAATCCAGTCAAGTAGTCAGAGGTCAGTTCTGTTGAGACCG
TTGGGTGGGACCAGGTGGGACAGAGAATGATTTATATCGAATCATCACAG
GAACAATTATACAAGCCCTTGCATTTTTGAAAACTGAAATACACGCTTTT
TTTATAAGAATACACTTTATAAGAATGTCCATGAAGAAAATGGCCAAAAA
ATTAAGAATATGCTAAGAATCACCATCATGGAATTTAGACCTAAGAATGC
CATTATTAATGCATTTTAACCTGTAGATTGCCATTCGATCCTAACCTTAG
AATATTGTAAGAATATTTTTGGATGATTTTCGCCAAAAAGTTAAGAATAT
CCATGATGAAATGAAAAAACACCATTCTTATAAAATAAAAGCGTGTAGTC
AGAATATAGTGAAAAGTAACAATTTGTCAAAGCCTTGATGGTAGTAGGCC
AAGGAAGCAGTATTTAATAAAAATCTATTATTTTTCTCTTTAACAGGCTG
GGGACGAATCCAACACGATCCAAGAATTGCACCTGACAAATTACAACAAG
CAAGACTTCCTATCTTGAAACAGCACGACAAATACGAACACATCTTAGCA
GGGTTTGGTGTCCAAGGAAAAGCAAACGCATGCCAAGGTGATTCTGGGGG
TCCATTGATGTGTAAGACCACATCAGGCCAATGGATGGTACAAGGCGCCG
CAAGCTGGGTCCTCAAAGGCTGTCACACAGTCAGTGCTTATACACCCCTT
ACAAAATACTTGAGCTGGGTTAAACATTATGTTCAAAATTAATTACAACT
CATTATTTTATTCACTGTTTATTCAATATGCAGAATAACAAAATAATAAG
AATTGTTGAAATCAAAAACCAGTGACATTTCTTTTCATTCTCCTGGTCTT
TCCGTATCCTACATAAACTACTATAGCTTGATATTTTTCAGCAGTTTAGA
TTAACCCTATTAGCCCCAGGGGGGGGTAGAATCTACCACGCTGGAGTTCT
TTTGTCTATATCTCGGAGAAAAATTTTTTAAACGACTTGAAACTTTCTGA
CTTTTAGTAAAATCTTATTAAGAGTACTTGTGCAAAATTTTAGGGTCATA
GGTTGTCCAGATCAGGTTTTCTGATTTTATCTGAAACATGACAAAAAACC
CAGCTAAAATCGCTTAAAACTCAACATTTTAAGGTGCTGATAACTTCTAA
ACTATTTATTCAATCCATTTCAAATTTTGACACGTGATAGGCATTGATAA
TATCAATTTAAAGAATCAAAATAAAATTTTGAAAATGATGACGTCATCAT
TTATGACGTCACNTTTTTCTCTTTAACAGGCTGGGGACGAATCCAACACG
ATCCAAGAATTGCACCTGACAAATTACAACAAGCAAGACTTCCTATCTTG
AAACAGCACGACAAATACGAACACATCTTAGCAGGGTTTGGTGTCCAAGG
AAAAGCAAACGCATGCCAAGGTGATTCTGGGGGTCCACTGATGTGTAAGA
CCACATCAGGCCAATGGATGGTACAAGGCGCCGCAAGCTGGGTCCTCAAA
GGCTGTCACACAGTCAGTGCTTATACACCACTAACANAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005917XLOC_005917Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010560-exon-sc0000107-1575043694:349513..349726TCONS_00010560-exon-sc0000107-1575043694:349513..349726Clytia hemisphaericaexon
TCONS_00010560-exon-sc0000107-1575043694:349133..349281TCONS_00010560-exon-sc0000107-1575043694:349133..349281Clytia hemisphaericaexon
TCONS_00010560-exon-sc0000107-1575043694:348585..348855TCONS_00010560-exon-sc0000107-1575043694:348585..348855Clytia hemisphaericaexon
TCONS_00010560-exon-sc0000107-1575043694:346788..347047TCONS_00010560-exon-sc0000107-1575043694:346788..347047Clytia hemisphaericaexon
TCONS_00010560-exon-sc0000107-1510915933:349513..349726TCONS_00010560-exon-sc0000107-1510915933:349513..349726Clytia hemisphaericaexon
TCONS_00010560-exon-sc0000107-1510915933:349133..349281TCONS_00010560-exon-sc0000107-1510915933:349133..349281Clytia hemisphaericaexon
TCONS_00010560-exon-sc0000107-1510915933:348585..348855TCONS_00010560-exon-sc0000107-1510915933:348585..348855Clytia hemisphaericaexon
TCONS_00010560-exon-sc0000107-1510915933:346788..347047TCONS_00010560-exon-sc0000107-1510915933:346788..347047Clytia hemisphaericaexon
TCONS_00010560-exon-sc0000107-1491911889:349513..349726TCONS_00010560-exon-sc0000107-1491911889:349513..349726Clytia hemisphaericaexon
TCONS_00010560-exon-sc0000107-1491911889:349133..349281TCONS_00010560-exon-sc0000107-1491911889:349133..349281Clytia hemisphaericaexon
TCONS_00010560-exon-sc0000107-1491911889:348585..348855TCONS_00010560-exon-sc0000107-1491911889:348585..348855Clytia hemisphaericaexon
TCONS_00010560-exon-sc0000107-1491911889:346788..347047TCONS_00010560-exon-sc0000107-1491911889:346788..347047Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000107supercontigsc0000107:346788..349726 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.230016	0.192501	0.185269	0.168994	0.103414	0.0551923	0.0221957	0.0684127	0.0145481	0.358846	0.0524726	0.0229956	1.32965	0.00504158	439.95	256.71	89.164	82.9423	82.9683	27.5569	89.4904	86.4553	1335.99	965.343	0.886858	0.786662	26.4584	42.1945	3980.16	5323.22
Blast
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BLAST of TCONS_00010560 vs. Swiss-Prot (Human)
Match: CTRB2 (Chymotrypsinogen B2 OS=Homo sapiens GN=CTRB2 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.998e-43
Identity = 80/215 (37.21%), Postives = 120/215 (55.81%), Query Frame = 1 
Query:  250 SRVVNGVEAPQGAWPWIVSLQTRNGFHYCGGTILSPTWILTASHCVDNNPTAIAVVAGAHNIKAMEWSQQKQWAKRYIQNPNYKRSDLYADIALIELWKPLIFNDRVSRACIPGFNQYPPAGIWCYIAGWGRIQHDPRIAPDKLQQARLPILKQHD-------KYEHILAGFGVQGKANACQGDSGGPLMCKTTSGQWMVQGAASWVLKGCHTVS 873
            SR+VNG +A  G+WPW VSLQ + GFH+CGG+++S  W++TA+HC     T+  VVAG  +  + E + Q     +  +NP +    +  DI L++L  P  F+  VS  C+P  +   PAG  C   GWG+ +++    PDKLQQA LP+L   +       +   ++   G  G  ++C GDSGGPL+C+   G W + G  SW  + C T +
Sbjct:   32 SRIVNGEDAVPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHC--GVRTSDVVVAGEFDQGSDEENIQVLKIAKVFKNPKFSILTVNNDITLLKLATPARFSQTVSAVCLPSADDDFPAGTLCATTGWGKTKYNANKTPDKLQQAALPLLSNAECKKSWGRRITDVMICAGASG-VSSCMGDSGGPLVCQ-KDGAWTLVGIVSWGSRTCSTTT 242
The following BLAST results are available for this feature:
BLAST of TCONS_00010560 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTRB22.998e-4337.21Chymotrypsinogen B2 OS=Homo sapiens GN=CTRB2 PE=2 ... [more]
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