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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010550 ID=TCONS_00010550|Name=TCONS_00010550|organism=Clytia hemisphaerica|type=transcript|length=571bp
CGAAAATCCAATATGAATGgcgagaaaaattttttaacattcTCTGATcg
ataaagaaaaattttcagttttattttgGTTATCCATAAATATAAAGATG
ACATTCAAGAAAAGCTTCAGCGCCTTCATTGTATTAGCAATATTCAATGT
TGTTACAAACCAAGTGTTAAAATTCAAAACGGACTCATGCTCGACTAAAA
TCCAAGCTAAGCTACGTGTCCAAAGCATATTAATAGCTAAGAAGATATCG
GCTCACGAGAAGAACATACAAACATTGAGAGATTGTTTCACAAGGTGTAC
AACCAATTGTGGAAGTTTCGCTTATCACGAATCAAAGAAAACATGTTTAA
TTTTCACGGAAGTTTTGGCAAAAGAAGTAATATCCCGATTCATGTCTGAA
GGTTGGCAGTATGGGAAAGTCAATAGCAAGAATAAGATTATACTTTACGT
CAAGTCTATTGGTACATGTAATGAAGAATACTGTCAAGGTGATTCATGTT
TGTTCGATGTCAAAGAAACATGCACACCTTCAATATATTCACTCCCTGAC
TGTGAGCAATACAATGGTAAG Run BLAST on NCBI protein sequence of TCONS_00010550-protein >TCONS_00010550-protein ID=TCONS_00010550-protein|Name=TCONS_00010550-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MTFKKSFSAFIVLAIFNVVTNQVLKFKTDSCSTKIQAKLRVQSILIAKKI
SAHEKNIQTLRDCFTRCTTNCGSFAYHESKKTCLIFTEVLAKEVISRFMS
EGWQYGKVNSKNKIILYVKSIGTCNEEYCQGDSCLFDVKETCTPSIYSLP
DCEQYNGK Run BLAST on NCBI transcript from alignment at sc0000107:257009..259161- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010550 ID=TCONS_00010550|Name=TCONS_00010550|organism=Clytia hemisphaerica|type=transcript|length=2153bp|location=Sequence derived from alignment at sc0000107:257009..259161- (Clytia hemisphaerica)
CGAAAATCCAATATGAATGGCGAGAAAAATTTTTTAACATTCTCTGATCG
ATAAAGAAAAATTTTCAGTTTTATTTTGGTTATCCATAAATATAAAGATG
ACATTCAAGAAAAGCTTCAGGTAAATAATTTCGAACATTTTCTCTCGTTA
AGGTGGGAGACGACGATAAGTATGTTAACACAGTTACTTTTAGAACTTTC
CCATGAAATATGAAACCATTGTAACCATTTTTGCCAGTGCACTTTAATCC
ATTGTCTGTATTCAATTCAAGCTATAGTGAAGTCTCAATAACTCGAACCT
CTATTATTCAAATATCTCCTTAACTCGAACAAGTTTGTTGGTCTCTTCAG
TTAACAAGCCCTTGTGAACAGTTCTCTATAACTCAAAATTTCTATAACTC
GAAAAAATCTGCGTTCCCCGTGCGTGTTCAAGTGATGGAGACTCTGTTGT
ACCTGGGAGTCCAGAAAATATGTTAATCGCCGGCAGGCGCTACTTCAGAA
TTGGTGAATCTCTTTTAAAAAAAAGATGAATATAGGAAATTTTTAAAGTA
TATCGATGAGAAAAGAGAAACTTATAATATGGCCCAGTTACATATATTTT
TCAAACATAATTTTACTCCATTTTCCACCACATTATAGCGCCTTCATTGT
ATTAGCAATATTCAATGTTGTTACAAACCAAGTGTTAAAATTCAAAACGG
ACTCATGCTCGACTAAAATCCAAGCTAAGCTACGTGTCCAAAGCATATTA
ATAGCTAAGAAGATATCGGCTCACGAGAAGAACATACAAACATTGAGAGA
TTGTTTCACAAGGTGTACAACCAATTGTGGAAGTTTCGCTTATCACGAAT
CAAAGAAAACATGTTTAATTTTCACGGAAGTTTTGGCAAAAGAAGTAATA
TCCCGATTCATGTCTGAAGGTTGGCAGTATGGGAAAGTCAATAGCAAGAA
TAAGGTGAACAGTCCTTCCAATCCAGTATATCACTTGTCTGTACACACAG
ACCCAGTCTCTACGGATAATTTCAAAATTCATTGCCGTAGAGAGTTTGTT
GTCACTGTTTTTTTTTCGCTTGAGATTTTTCAAACCGACCGCTGCGATGG
AGCGTTGATGAGAGAGGGTAGACGATGAGAGAAGTGTTGCTATTTATAAA
TCATACTTCATCGCAGAGGTCTCCGTAGGGGACAATCCGCACATAGTGTA
CTACGAAGCAGTAAACGTGAGATACACTCTGGTACAGAGTAGTACATATA
ACCAATGCATAAAATTTTACCTTGTTCTCGGCTTTTTGATGCTTCTTAAT
AGCATCAAATAATTAATACGCAGGCGTTCATCACTAATAGTTCTATTTAT
ACTGAGACGATTAATTTGTCTGAGACGAGCAACTTAGAAAATGAGCATTA
TAGAGGAGTGTACTTTCCATTCATGTTTCAATAAATAGGATCTCCTCCAC
AAATCATATATTTACAAACTACTCGTCTCGGCAATTTTTCCGTCTCAGTA
TAAATGGAACTAATGTGAATAAAGCCTAATATAAACAGGGACGAGGTTGG
CATTTTGTTCCATAAGATAAAGATAAATCTAGAAGATTTCACGAATTTTT
TGACTTCTGAAATTAAATCTTGCAAAAATCAATCCGATATGAGTAATCAA
GAATGTAAAAAATTTGCATGAACATGAGAATCCACTTGTTTCTCGTTATA
AAAATTTCGCTTGGGAAGAAAAAAGTGTATCTGCTCTCTAACTGGGGCTA
CAACTATGGCCATAATATTTAGTACAGTAGTTTTTTAGTGCCTTAACTTA
GGCTTGTAAAATAGAGTTTTAACTTTGAGTTTTAACATGAGACTTAAAAA
TTAGGATAGGATCTGAGGATATAAAAGCTTGTGAATTGTCCGACTAGCCT
AAGAAAATTGCCTGGAAAGTCATTATACCCCTCCCAAATTGAAATATCCG
ATTATATAAAGAAGGAAAAAATACCCAGAAATACCAACTCCATCCAATCT
TTGATCTCCATATTATAGATTATACTTTACGTCAAGTCTATTGGTACATG
TAATGAAGAATACTGTCAAGGTGATTCATGTTTGTTCGATGTCAAAGAAA
CATGCACACCTTCAATATATTCACTCCCTGACTGTGAGCAATACAATGGT
AAG Coding sequence (CDS) from alignment at sc0000107:257009..259161- >TCONS_00010550 ID=TCONS_00010550|Name=TCONS_00010550|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at sc0000107:257009..259161- (Clytia hemisphaerica)
ATTATACTTTACGTCAAGTCTATTGGTACATGTAATGAAGAATACTGTCA
AGGTGATTCATGTTTGTTCGATGTCAAAGAAACATGCACACCTTCAATAT
ATTCACTCCCTGACTGTGAGCAATACAATGGTAAGCGCCTTCATTGTATT
AGCAATATTCAATGTTGTTACAAACCAAGTGTTAAAATTCAAAACGGACT
CATGCTCGACTAAAATCCAAGCTAAGCTACGTGTCCAAAGCATATTAATA
GCTAAGAAGATATCGGCTCACGAGAAGAACATACAAACATTGAGAGATTG
TTTCACAAGGTGTACAACCAATTGTGGAAGTTTCGCTTATCACGAATCAA
AGAAAACATGTTTAATTTTCACGGAAGTTTTGGCAAAAGAAGTAATATCC
CGATTCATGTCTGAAGGTTGGCAGTATGGGAAAGTCAATAGCAAGAATAA
GATGACATTCAAGAAAAGCTTCAGATTATACTTTACGTCAAGTCTATTGG
TACATGTAATGAAGAATACTGTCAAGGTGATTCATGTTTGTTCGATGTCA
AAGAAACATGCACACCTTCAATATATTCACTCCCTGACTGTGAGCAATAC
AATGGTAAGCGCCTTCATTGTATTAGCAATATTCAATGTTGTTACAAACC
AAGTGTTAAAATTCAAAACGGACTCATGCTCGACTAAAATCCAAGCTAAG
CTACGTGTCCAAAGCATATTAATAGCTAAGAAGATATCGGCTCACGAGAA
GAACATACAAACATTGAGAGATTGTTTCACAAGGTGTACAACCAATTGTG
GAAGTTTCGCTTATCACGAATCAAAGAAAACATGTTTAATTTTCACGGAA
GTTTTGGCAAAAGAAGTAATATCCCGATTCATGTCTGAAGGTTGGCAGTA
TGGGAAAGTCAATAGCAAGAATAAGATGACATTCAAGAAAAGCTTCAGAT
TATACTTTACGTCAAGTCTATTGGTACATGTAATGAAGAATACTGTCAAG
GTGATTCATGTTTGTTCGATGTCAAAGAAACATGCACACCTTCAATATAT
TCACTCCCTGACTGTGAGCAATACAATGGTAAGCGCCTTCATTGTATTAG
CAATATTCAATGTTGTTACAAACCAAGTGTTAAAATTCAAAACGGACTCA
TGCTCGACTAAAATCCAAGCTAAGCTACGTGTCCAAAGCATATTAATAGC
TAAGAAGATATCGGCTCACGAGAAGAACATACAAACATTGAGAGATTGTT
TCACAAGGTGTACAACCAATTGTGGAAGTTTCGCTTATCACGAATCAAAG
AAAACATGTTTAATTTTCACGGAAGTTTTGGCAAAAGAAGTAATATCCCG
ATTCATGTCTGAAGGTTGGCAGTATGGGAAAGTCAATAGCAAGAATAAGA
TGACATTCAAGAAAAGCTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010550-exon-sc0000107-1575043694:259042..259161 | TCONS_00010550-exon-sc0000107-1575043694:259042..259161 | Clytia hemisphaerica | exon |
| TCONS_00010550-exon-sc0000107-1575043694:258208..258523 | TCONS_00010550-exon-sc0000107-1575043694:258208..258523 | Clytia hemisphaerica | exon |
| TCONS_00010550-exon-sc0000107-1575043694:257009..257143 | TCONS_00010550-exon-sc0000107-1575043694:257009..257143 | Clytia hemisphaerica | exon |
| TCONS_00010550-exon-sc0000107-1510915933:259042..259161 | TCONS_00010550-exon-sc0000107-1510915933:259042..259161 | Clytia hemisphaerica | exon |
| TCONS_00010550-exon-sc0000107-1510915933:258208..258523 | TCONS_00010550-exon-sc0000107-1510915933:258208..258523 | Clytia hemisphaerica | exon |
| TCONS_00010550-exon-sc0000107-1510915933:257009..257143 | TCONS_00010550-exon-sc0000107-1510915933:257009..257143 | Clytia hemisphaerica | exon |
| TCONS_00010550-exon-sc0000107-1491911889:259042..259161 | TCONS_00010550-exon-sc0000107-1491911889:259042..259161 | Clytia hemisphaerica | exon |
| TCONS_00010550-exon-sc0000107-1491911889:258208..258523 | TCONS_00010550-exon-sc0000107-1491911889:258208..258523 | Clytia hemisphaerica | exon |
| TCONS_00010550-exon-sc0000107-1491911889:257009..257143 | TCONS_00010550-exon-sc0000107-1491911889:257009..257143 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000107 | supercontig | sc0000107:257009..259161 - |
Blast
The following BLAST results are available for this feature:
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