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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010548 ID=TCONS_00010548|Name=TCONS_00010548|organism=Clytia hemisphaerica|type=transcript|length=1946bp
GAATTAAACACCGACTTTAATATGCATCGGTTTATCTCAATGGATGATCC
TACACGAAAGCTGAATTTCATCCGTACTGGGTttgGAACTTTCGATGTTG
GAAACGGATTTTATTTAGGGAAAAAAATCGTTTTCCATAACGTGGGATAT
TTTGTCGGGCCGCAAACTCAACATTTACCAATAGATGCTTACAACTACAT
AAACTTCACAAACATCCATCTTGAAGCTGTTCGTACGTTAGGACCTCCAC
ATTTCCAAGGAAGATATGATAATTTCCAAAGCTATAACTTTGATGGTAGA
TGGAATGATTATTCAATGATGTTGCAGTCGTTCTTTGTACCACCAACGAA
TGGATTATACCAATTTATCTTGGTATCGGATGACAACGCCAAACTTTACA
TATCAAATGACCATCAAGAAAGTGGCAGATACGAGATCATTCATAATACT
GAATGGGGCCCCATTGATGACTATAGCCATCGATCAAGTCAAATCGAACT
GGTGGCTGGTAAAGAATACTATTTGGAAATCATCGGTCACGACAATAGTA
ACGATGAATATTTTATTGCTGGTGTTATTCTACCAAGTGGTGAAGTGATC
GTACCTATAACATATAAATATCTAAAGCCATATTGGTGAAGTAATGTAGA
CCCGTCTATCTGAGTCACCGACTTATGCCGACTTTTCCGACACAAAACGT
TGtgtcaacgttcatctaacatttATGAACCTTAGCTCTAGACCTTTAGA
CGGTCGACTTTATGTCCTGTCTATCAAAATTGTTAGAGTAGTCAAAAAGT
GGGCAGAAAGTTGACAGCTAAAGATTTTAATTGATGAAAAAGATTAAAAT
GATCACTGCGAAGAAAGATAATGGTCAAAAGAACAATAATGTGGAAAAGC
CCACACATACTTTCTAACCATCTTATTTGAGAATAAAAGTATGTCCGGAA
AGGTGGAAAGCGGAACAGATCCGAATCCgaaaaaagtatttcaaaactTC
CGGGTTGGAAAGATTATTAACGACTTTAGCAAGACTTTCTGGTTCAGAGT
AAACTGTGGTTGCTGTGGTTTCTACGATATCCCTTTTCGTACAAACACGC
ACAAAAGCTTCATTAATACTGATCAGGCTATTGGaattaaacacccctgt
ctcacagccccggtggaacttttttcctcagtggggataacaATTTCTAG
TGAAATTCCAATGGAGATAGAAATTCCATTTATATAAGGTtaaaaatttc
agtggggatggttttggagtgacacttttaaacattgaatttcgaatggg
gatgaaatcaaagtctaTTTCCCACTGGGGCTAAAATTCAAGGTATTTTT
CAACCGGGaacgaaattttagccaaattttgggGCTGGGAtctcagcggg
tctgtgacacaggggtgtaattgaCATGGAACGTTAAGAACAAAGAACAA
AATAACAATCGGATTAGCATTAAAACGATTAAATAATTTTACGAGTAAAA
GTACATAATGAATATTTAGTGGTGATGAGAACCAACGTCAAAATTTTACC
gagaactttttttataaaatatcacaTCATCCAGTATCCAACCAGGATTA
CTACCGGTAGGATAAAGTTGATTTGATATTTCGGGACATTTGCGATCGTT
ATCCTAAAACAACTATAAATTTGTAATATCGATGGACGAAATTGAtggac
ccctcaaagtattCGAAATTATgttaaaggttgtttttttatgttgtgtt
gttttgaagtttgtttataaTATGTTTCAGAGTTACATTAAGGAGGATAT
TTCGTTGTAAATaaagtattttataaaatatgtAAAACATTTCATTTTAG
TCGGCTTTTGGAAGAATCCCTAGTTTGATTCgcaaacctctatagatata
tctcctataagaaacttttttcgctagaggatgagcagaagcctaa Run BLAST on NCBI transcript from alignment at sc0000107:247579..253383- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010548 ID=TCONS_00010548|Name=TCONS_00010548|organism=Clytia hemisphaerica|type=transcript|length=5805bp|location=Sequence derived from alignment at sc0000107:247579..253383- (Clytia hemisphaerica)
GAATTAAACACCGACTTTAATATGCATCGGTTTATCTCAATGGATGATCC
TACACGAAAGCTGAATTTCATCCGTACTGGGTGTAAGTACAGTCTCTAAA
CTCGCACTCAGCCCCTTAGTTCGCGCTTTCATGATTCTGACAGTTTATCA
TTATAACCAAATAGCGGTGCAAGTTACTCGTAGCACGAAATGGTGTAGGT
GTAATCTTGAAACAACAAGATATTGACCCCTTGCAGATTGTGTGCAGGTT
TAAATTATTTCTCTTGAATGTCCGCTGTAACTCGTTTTTTTCAAGCAAAA
AGATACTTCATACAGTTCACGCTCTCTAAATCGACGTTATATTATTCGAT
AGGTTCTCCTAATCGATGAAATTTAGTCCCCGTCAACAACAAGAAACTCT
GTCAATTTTATTTCCATATTCAGCTGACGCTCTCTTATTTAGTTCTACTT
TTCGATGCTCTCCATTACTCGATAATATTGAAAAAGCCATCGTCAACGAA
CAACTCTCATAAACAACGCTCTACCATCCGATACGCTCCCTCATTCGATG
AAAATCCAATTCCCCTTGAAGATCGAATTAGAGAGCGCCAACTGAACGTT
TGAAATATTATCATCGAGAAATCAAAACATTAATTTTTCTCGTATATGTA
ACACATACGGTGAAGTTAGCTATTATAACTTTAGATTTCTTTTTATTAGA
ACAAAGACTTAGAGACTTTTTATATGATATAGAAAGAAGGACGTCTCTAT
GCTGACAAAGCAGAATAAACAAAAAAATTCTAAATAATTGAACTTGTACG
GCACCGAAAGGGGAGAAAGTAATGGAGGCGCTCTCCACTGTAGAGCAATA
GAAAAATTATGGGCTTTTCCAGAAAAAAATTGAACATGGGGGGGGGGTGG
AGGATATAACAATTTTCAGTGATTTACCCCCCGGACAAAGTGACTTTTGG
CCGCCCGGACAACGGGTTTTACTCCCTGGACAAACATAAGTTGACCCCCG
GACAACCCAAATTACCCCCAGACATAGCAAATTTACCCCCGGACAAGGCA
AATTTAAATGATTTTCGCTACCCCCGGACAATATATCCTCCACCCCCATG
TGCGAACATTTTCTGGAAGAGCTTTTTTGACATTTTATTCTTTTTATTTC
AGTTGGAACTTTCGATGTTGGAAACGGATTTTATTTAGGGAAAAAAATCG
TTTTCCATAACGTGGGATATTTTGTCGGGCCGCAAACTCAACATTTACCA
ATAGATGCTTACAACTACATAAACTTCACAAACATCCGTAAGTCGGTTGA
TGAGTATTGCGAGTTTATCACGAGGTGTCACGTAAAAAGTACTGTGTTAG
ACCACTTCCACTTCAAATGTATGCCGACTTTTCATATCCCTTTTCGGTCA
CAAGTCATAGCCCTTTGAAATAGGTCTATTTCGACCCATTTTATCAATTT
ATCGCCTTTTTTTGGACATATTAAGAGGGCTGTGGAGATGAAAAGTCATC
CAGAAAAATCTGAATACACTTGTAAAACCAGCTATTGTTCAAAGTTTCAA
AAAAATGAAAAAACAAAATTTTTAGTCAATTATAAAAAATCTTCATTTTA
AATTTTCCAGTTTCGCGAGGCAGGAAAATTACGAATTCAATGTAAAAATC
TTTTTCGCGAGCATATATTGGTAATTCTAGAATTGCTTTTTGTTTGGTAG
AAAGTACACCAATCTAATATCGTTGGATCCGTGGTAATTCAGGTCGGATA
GCGGGCCTCCAAAAAATAACGCATAGGATAGCTAAACTTTCTCATTTCCG
GCAAAACTTACTTATTACCACTTTACAACGGTAAAAGACCAAGAGCTACG
CATTTGTACGCAATAAAAAAAAATTTTGTCGTTTTTTTTGTCAAAAAGAT
CCAAAAATGCTTCAGGAATGTTTCCCGGGAATGAAGAAAGTTAAGATATC
CTATGGTATGCTTGGGTATTTGACCAAGTAAATTATCTCTTTCAGCTGGC
GCTGTTAAAGCATCGGCTTGGACATTTAACCAAATAGATCTTGAAGCTGT
TCGTACGTTAGGACCTCCACATTTCCAAGGAAGATATGATAATTTCCAAA
GCTATAACTTTGATGGTAGATGGAATGATTATTCAATGATGTTGCAGTCG
TTCTTTGTACCACCAACGAATGGATTATACCAATTTATCTTGGTATCGGA
TGACAACGCCAAACTTTACATATCAAATGACCATCAAGAAAGTGGCAGAT
ACGAGATCATTCATAATACTGAATGGGGCCCCATTGATGACTATAGGTAC
GTTTGTTAACTATGACGTCATATTGCTCACTTTCTGCATCAAGAACTCTT
TTTCACTTGGTTTTTACCCTATGAGATAAATCTTTTTTGAAATCTACATC
AGATTTCCGATCCAATAATGTATAATATGACCATATTTGTAAAGGTTGAA
ATTTCACCTGAGCTTGACCAGTCTGACGTCTGATGACGTCACAAAATCTT
AAAAAGGTCTGGAAACGAGTAAAGGAGGTGGATAGGGAATAGCCAGTAAA
ACTTTTCCGAATCGTTTCATGTCATAAAACAAGTTCCAAAAGATTTTAGA
TTCTTCACACTAAGATTTCAAGTGGTCCAGCAACCTGACTATAAGGTTAA
CGGTTTAATACTGGCTTATCTTATAAAGTTTTTTCGACTTTATAAACCCG
AGAGTGCCTTCAAACTCGTATACAGTTGATATAGCCGATTGGTAGTGTGA
AGGTTTTGAACACAAACTTTCACCGCAATGGACTGTGTTCGAATCCCAAG
CACTGTCAGGCAAGATGTTAAGGAAATATGGTCATAGACTCTCTACCTTC
ACTCATATATCATTTTCTCTCAATCCGGCTGATAATCGAAGTATCGATTG
ACGTCAAATGAGCTTAGTAAAGCTCAAATTGCGGATGTAGAGCGATAAAC
TCGGTAAACATCGTAAACAGTCCTTAGCTTTCTTTTTTGAAGACTCTGGG
TACGAGATATTAGAGTGCCGTGGCTATATACCTTCAAAATTACTAACTTA
AGGCTATAACTCCTGACCACTTGATTTAAAGGGACAAGTTTGAGCTCATC
CCGATTTAAAAGGGCACAAACAAGATGCCTTAGGAAAATGGAGGTTTTGG
CAGGAAAATTTCAAAAAGATGGGGGGGGGTCATTATAAAACGTTATTGGA
GTGATTTTTGCAAAGTAATCCCGATACAATTAAGCACAAAAGAGTATCTT
TCCAATAGTACCAGAACTATTGTCTAACTCTCAAGTTAAAAGCTTAAATG
TCAGTTTGAAAATTTTCACATTTTCAAAAAAAGTTTTGCCATATGCTGTA
TGGAAGGAAACAGTGGATTTGGAATAGGAAATTTCAAACGTTTGATTCCA
TTATGGCCGATTTTCTTTAAGTAATATAACCACTTAGGCAAAACCTTGAA
ATACCTCGATCAAAAGGACTGTGATATTCGTTCATCGATTTATTTCTGTA
TCGGGGAAAATTTGACTGACGATACTCTCGAAGACCTTGAACGCACTTCC
TTCCTCGACTGTATGTAATTTTGCGGCAAAACATATTTTTGTAGGGTTCA
TACGATAGATTTATAAAGCCCGAAGGGGCTAGATGTCGTACGTTTGCTGA
AAAGTGTGCCGTGGTTAGGTAGGAAATCCTACCTTGGTCACGTGACATTA
CAATAGAATTTCAGCGCTTGACCAATCAGAAGCTTCGCGGATTTTCGAAA
ACAATCCCCCCCGCGGGGTGTAAGAACAGATCTTTAAAGCCCGAAGGGCT
AGATTTGGGGCTTCTATCGAAAAGTGAAGCCTAGTTTTGGAAGGATTTCC
TACCAAAGTCACGTGACTAAAATATGCAATTTCACCGGTTTGAGAGATGT
GAAATAGCGTTTGCCGCCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTGAAATAGCGTTTGCCGCCTACTTTTTTTGATCTCGCGC
TCCGAAAACAATTAAAATGCTAGATCCTATCCATCGGCACGAAATTTAAA
AAGTCAAAATTTTGCTTCACTTTTTTTTGCTGGAGAAAGCTTAAAGTTGC
CTATCTAGCCCTTCGAGCTTTACAGATATCTGTGGGTGTAAGTAGGTGGT
TTTTGAATTTCTTTATCCNTTTTGCTTCACTTTTTTTTGCTGGAGAAAGC
TTAAAGTTGCCTATCTAGCCCTTCGAGCTTTACAGATATCTGTGGGTGTA
AGTAGGTGGTTTCTGAATTTCTTTATCCATTCTAGCCATCGATCAAGTCA
AATCGAACTGGTGGCTGGTAAAGAATACTATTTGGAAATCATCGGTCACG
ACAATAGTAACGATGAATATTTTATTGCTGGTGTTATTCTACCAAGTGGT
GAAGTGATCGTACCTATAACATATAAATATCTAAAGCCATATTGGTGAAG
TAATGTAGACCCGTCTATCTGAGTCACCGACTTATGCCGACTTTTCCGAC
ACAAAACGTTGTGTCAACGTTCATCTAACATTTATGAACCTTAGCTCTAG
ACCTTTAGACGGTCGACTTTATGTCCTGTCTATCAAAATTGTTAGAGTAG
TCAAAAAGTGGGCAGAAAGTTGACAGCTAAAGATTTTAATTGATGAAAAA
GATTAAAATGATCACTGCGAAGAAAGATAATGGTCAAAAGAACAATAATG
TGGAAAAGCCCACACATACTTTCTAACCATCTTATTTGAGAATAAAAGTA
TGTCCGGAAAGGTGGAAAGCGGAACAGATCCGAATCCGAAAAAAGTATTT
CAAAACTTCCGGGTTGGAAAGATTATTAACGACTTTAGCAAGACTTTCTG
GTTCAGAGTAAACTGTGGTTGCTGTGGTTTCTACGATATCCCTTTTCGTA
CAAACACGCACAAAAGCTTCATTAATACTGATCAGGCTATTGGAATTAAA
CACCCCTGTCTCACAGCCCCGGTGGAACTTTTTTCCTCAGTGGGGATAAC
AATTTCTAGTGAAATTCCAATGGAGATAGAAATTCCATTTATATAAGGTT
AAAAATTTCAGTGGGGATGGTTTTGGAGTGACACTTTTAAACATTGAATT
TCGAATGGGGATGAAATCAAAGTCTATTTCCCACTGGGGCTAAAATTCAA
GGTATTTTTCAACCGGGAACGAAATTTTAGCCAAATTTTGGGGCTGGGAT
CTCAGCGGGTCTGTGACACAGGGGTGTAATTGACATGGAACGTTAAGAAC
AAAGAACAAAATAACAATCGGATTAGCATTAAAACGATTAAATAATTTTA
CGAGTAAAAGTACATAATGAATATTTAGTGGTGATGAGAACCAACGTCAA
AATTTTACCGAGAACTTTTTTTATAAAATATCACATCATCCAGTATCCAA
CCAGGATTACTACCGGTAGGATAAAGTTGATTTGATATTTCGGGACATTT
GCGATCGTTATCCTAAAACAACTATAAATTTGTAATATCGATGGACGAAA
TTGATGGACCCCTCAAAGTATTCGAAATTATGTTAAAGGTTGTTTTTTTA
TGTTGTGTTGTTTTGAAGTTTGTTTATAATATGTTTCAGAGTTACATTAA
GGAGGATATTTCGTTGTAAATAAAGTATTTTATAAAATATGTAAAACATT
TCATTTTAGTCGGCTTTTGGAAGAATCCCTAGTTTGATTCGCAAACCTCT
ATAGATATATCTCCTATAAGAAACTTTTTTCGCTAGAGGATGAGCAGAAG
CCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010548-exon-sc0000107-1575043694:253302..253383 | TCONS_00010548-exon-sc0000107-1575043694:253302..253383 | Clytia hemisphaerica | exon |
| TCONS_00010548-exon-sc0000107-1575043694:252097..252231 | TCONS_00010548-exon-sc0000107-1575043694:252097..252231 | Clytia hemisphaerica | exon |
| TCONS_00010548-exon-sc0000107-1575043694:251088..251346 | TCONS_00010548-exon-sc0000107-1575043694:251088..251346 | Clytia hemisphaerica | exon |
| TCONS_00010548-exon-sc0000107-1575043694:247579..249048 | TCONS_00010548-exon-sc0000107-1575043694:247579..249048 | Clytia hemisphaerica | exon |
| TCONS_00010548-exon-sc0000107-1510915933:253302..253383 | TCONS_00010548-exon-sc0000107-1510915933:253302..253383 | Clytia hemisphaerica | exon |
| TCONS_00010548-exon-sc0000107-1510915933:252097..252231 | TCONS_00010548-exon-sc0000107-1510915933:252097..252231 | Clytia hemisphaerica | exon |
| TCONS_00010548-exon-sc0000107-1510915933:251088..251346 | TCONS_00010548-exon-sc0000107-1510915933:251088..251346 | Clytia hemisphaerica | exon |
| TCONS_00010548-exon-sc0000107-1510915933:247579..249048 | TCONS_00010548-exon-sc0000107-1510915933:247579..249048 | Clytia hemisphaerica | exon |
| TCONS_00010548-exon-sc0000107-1491911889:253302..253383 | TCONS_00010548-exon-sc0000107-1491911889:253302..253383 | Clytia hemisphaerica | exon |
| TCONS_00010548-exon-sc0000107-1491911889:252097..252231 | TCONS_00010548-exon-sc0000107-1491911889:252097..252231 | Clytia hemisphaerica | exon |
| TCONS_00010548-exon-sc0000107-1491911889:251088..251346 | TCONS_00010548-exon-sc0000107-1491911889:251088..251346 | Clytia hemisphaerica | exon |
| TCONS_00010548-exon-sc0000107-1491911889:247579..249048 | TCONS_00010548-exon-sc0000107-1491911889:247579..249048 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000107 | supercontig | sc0000107:247579..253383 - |
Blast
The following BLAST results are available for this feature:
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