TCONS_00010547 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010547
Unique NameTCONS_00010547
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1473

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010547 ID=TCONS_00010547|Name=TCONS_00010547|organism=Clytia hemisphaerica|type=transcript|length=1473bp
GCAACGTTTTTAAAAAAAGCTGTTGATTGTACTGTGCGTgtcttgtttga
aaaatttataattttatgaaaaataaaacctttgttTATGCTAGCTACag
ggataaaaaaaatttccccctctaaaatttcatgttttcgAATATATAAA
AAGAGGTAGTTTGAAATGGAAAtgggaattttcattttgatgttttagCT
ATGCAAGGAGCTTAAACAGATGGGTAGGAAAGATGTTATCTTGACAGGGT
GCCAGATCAAATGTTCCAGGAAATAATAATATGACACCTTAAGGTTGACA
AAAAAGGGTGAAGTCGCCAAATTAGGTAAACAAAAAGGTCCAATTCTGAA
TGAATATTGTAATATTGGAGTTGCTGAATTTTATAACTATTGCTAAATGG
TTAGACAGTTTTACGTAATATAGCATATATTGTTCCTGGAAAATATTTCC
CTTGATTAGCACAATTCTTTTCACCTATATAACACTTAGATATAAAATCG
AtcaagtgaaaaagaaatttattaaaGAATCAGAAGTCGAAAAACATTCG
GTTGATGAGAAAGAAGTGAAGATCGAGAGAACAAAATTGGGAACGAAGAT
ACGCGATACACATCAAGATTTCTGAGTCTTGATTTAAGAATAAAATAATA
AGAGATTCGTCCTTTGCTTATGGATTTGAGCAAATtgaaaagtaaagttg
aaattgGACCATTGCCAAACGTTGTTATATTCTTTGAGACTTTTCACAAT
GCATTAGTACAAGATTTCAATAAGAAAATTGATGACATTGGAGAAACTTG
GACTGAAACGAAAGACGCTATTGGAAATTTAAAAGTGGCTTCTAAAGAAG
TACTTCGCGTCCGCGGTGAAACCGCGCGACGGATTGAAGAAAGAGATTAC
TGGAAACAGctttacgaaaaagaaaaagctgAGAAAGAAGAAGCATACAA
ACGAGTAGATGAAATTAAAAACGAACTCTTAAAAGTCAAAGAAGACAAGA
AGGTTAAAAATGAATACATTCTGATTAACAATGAGAATCTGGTCCGTAAA
TTACACGAAGAGAGACAATTACGGTTAGGATTAATAGACGATATGCTTGA
TTCAAGAAGTTTTATAAACCAAGCGAAAATGTCACAGAAGAAGGAATTAT
TATCAGACTTAAGAGAACAATGCATCACTgacattgaaaaaatgaagCTC
TCCACCAAAACACGAAAAATCTCTTTATCGCCAAAGAAGGCTTCGTTTGT
ATGATGGATGGACGGATGGGCGGATGGAATTCCTAACaactattttttga
tgatatcagcAAATGCTacttttatcatatttttatcATAGATTTTAAAT
TTATAAATGTAAAAGAACAAACTTAAAAGagcaaatttgtttatttttaa
gtaaagaTGATTGATCTATGTCATCTATGGTAAAATCAGTGGAAGACAGG
TAGGTAGATAgatagacagacag
Run BLAST on NCBI

protein sequence of TCONS_00010547-protein

>TCONS_00010547-protein ID=TCONS_00010547-protein|Name=TCONS_00010547-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MDLSKLKSKVEIGPLPNVVIFFETFHNALVQDFNKKIDDIGETWTETKDA
IGNLKVASKEVLRVRGETARRIEERDYWKQLYEKEKAEKEEAYKRVDEIK
NELLKVKEDKKVKNEYILINNENLVRKLHEERQLRLGLIDDMLDSRSFIN
QAKMSQKKELLSDLREQCITDIEKMKLSTKTRKISLSPKKASFV
Run BLAST on NCBI

transcript from alignment at sc0000107:241135..243153-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010547 ID=TCONS_00010547|Name=TCONS_00010547|organism=Clytia hemisphaerica|type=transcript|length=2019bp|location=Sequence derived from alignment at sc0000107:241135..243153- (Clytia hemisphaerica)
GCAACGTTTTTAAAAAAAGCTGTTGATTGTACTGTGCGTGTCTTGTTTGA
AAAATTTATAATTTTATGAAAAATAAAACCTTTGTTTATGCTAGCTACAG
GGATAAAAAAAATTTCCCCCTCTAAAATTTCATGTTTTCGAATATATAAA
AAGAGGTAGTTTGAAATGGAAATGGGAATTTTCATTTTGATGTTTTAGCT
ATGCAAGGAGCTTAAACAGATGGGTAGGAAAGATGTTATCTTGACAGGGT
GCCAGATCAAATGTTCCAGGAAATAATAATATGACACCTTAAGGTTGACA
AAAAAGGGTGAAGTCGCCAAATTAGGTAAACAAAAAGGTCCAATTCTGAA
TGAATATTGTAATATTGGAGTTGCTGAATTTTATAACTATTGCTAAATGG
TTAGACAGTTTTACGTAATATAGCATATATTGTTCCTGGAAAATATTTCC
CTTGATTAGCACAATTCTTTTCACCTATATAACACTTAGATATAAAATCG
ATCAAGTGAAAAAGAAATTTATTAAAGAATCAGAAGTCGAAAAACATTCG
GTTGATGAGAAAGAAGTGAAGATCGAGAGAACAAAATTGGGAACGAAGAT
ACGCGATACACATCAAGATTTCTGAGTCTTGATTTAAGAATAAAATAATA
AGAGATTCGTCCTTTGCTTATGGATTTGAGCAAATTGAAAAGTAAAGTTG
AAATTGGACCATTGCCAAACGTTGTTATATTCTTTGAGACTTTTCACAAT
GCATTAGTACAAGATTTCAATAAGAAAATTGATGACATTGGAGAAACTTG
GACTGAAACGAAAGACGCCATTGGANAAAATTGATGACATTGGAGAAACT
TGGACTGAAACGAAAGACGCTATTGGAAATTTAAAAGTGGCTTCTAAAGA
AGTACTTCGCGTCCGCGGTGAAACCGCGCGACGGATTGAAGAAAGAGATT
ACTGGAAACAGGTAAAGTCAATGTATATTTCAATTTCTCCTTTCATCTGG
TCCGTCCGAAATTTAAGTTCCACTACAATTAGAGAAAACATTTATCAATC
TTGACATTTTACGTGGTACTTTGAGTTCTGCAAGGGATAAAGGCTTGGAA
TGTCGAAATTTTTGTCTCGGTCGTTTGAATCATTTCTAATGTTATATAAA
GATAAAAAGTTATGGTTTTATGAAACATACACTGACATCGTTAAAAAAAG
TTTGGTAAATTAGAAGAATATTCTAAATTTCGACTGATTTGATTTAACAG
CCTCAATAGCGTAGACAGAATGCCCCTCCTGGTCTACACTTTACTGAGCC
TTGTTGGATTTCATGCTTTGCTGAACAAAACGGGGAGCAGGAGTTCCTGT
TCTGTTCAACAAGGTATGGAAATTGAAATTCCTATTTACACGACCAGTCA
TTTGTACGAGAAAAACTGACCCATTCTTATAATTTCTTCACTTTTTATTT
TGTAGCTTTACGAAAAAGAAAAAGCTGAGAAAGAAGAAGCATACAAACGA
GTAGATGAAATTAAAAACGAACTCTTAAAAGTCAAAGAAGACAAGAAGGT
TAAAAATGAATACATTCTGATTAACAATGAGAATCTGGTCCGTAAATTAC
ACGAAGAGAGACAATTACGGTTAGGATTAATAGACGATATGCTTGATTCA
AGAAGTTTTATAAACCAAGCGAAAATGTCACAGAAGAAGGAATTATTATC
AGACTTAAGAGAACAATGCATCACTGACATTGAAAAAATGAAGCTCTCCA
CCAAAACACGAAAAATCTCTTTATCGCCAAAGAAGGCTTCGTTTGTATGA
TGGATGGACGGATGGGCGGATGGAATTCCTAACAACTATTTTTTGATGAT
ATCAGCAAATGCTACTTTTATCATATTTTTATCATAGATTTTAAATTTAT
AAATGTAAAAGAACAAACTTAAAAGAGCAAATTTGTTTATTTTTAAGTAA
AGATGATTGATCTATGTCATCTATGGTAAAATCAGTGGAAGACAGGTAGG
TAGATAGATAGACAGACAG

Coding sequence (CDS) from alignment at sc0000107:241135..243153-

>TCONS_00010547 ID=TCONS_00010547|Name=TCONS_00010547|organism=Clytia hemisphaerica|type=CDS|length=1755bp|location=Sequence derived from alignment at sc0000107:241135..243153- (Clytia hemisphaerica)
CTTTACGAAAAAGAAAAAGCTGAGAAAGAAGAAGCATACAAACGAGTAGA
TGAAATTAAAAACGAACTCTTAAAAGTCAAAGAAGACAAGAAGGTTAAAA
ATGAATACATTCTGATTAACAATGAGAATCTGGTCCGTAAATTACACGAA
GAGAGACAATTACGGTTAGGATTAATAGACGATATGCTTGATTCAAGAAG
TTTTATAAACCAAGCGAAAATGTCACAGAAGAAGGAATTATTATCAGACT
TAAGAGAACAATGCATCACTGACATTGAAAAAATGAAGCTCTCCACCAAA
ACACGAAAAATCTCTTTATCGCCAAAGAAGGCTTCGTTTGTATGAATTGG
AGAAACTTGGACTGAAACGAAAGACGCTATTGGAAATTTAAAAGTGGCTT
CTAAAGAAGTACTTCGCGTCCGCGGTGAAACCGCGCGACGGATTGAAGAA
AGAGATTACTGGAAACAGATGGATTTGAGCAAATTGAAAAGTAAAGTTGA
AATTGGACCATTGCCAAACGTTGTTATATTCTTTGAGACTTTTCACAATG
CATTAGTACAAGATTTCAATAAGAAAATTGATGACCTTTACGAAAAAGAA
AAAGCTGAGAAAGAAGAAGCATACAAACGAGTAGATGAAATTAAAAACGA
ACTCTTAAAAGTCAAAGAAGACAAGAAGGTTAAAAATGAATACATTCTGA
TTAACAATGAGAATCTGGTCCGTAAATTACACGAAGAGAGACAATTACGG
TTAGGATTAATAGACGATATGCTTGATTCAAGAAGTTTTATAAACCAAGC
GAAAATGTCACAGAAGAAGGAATTATTATCAGACTTAAGAGAACAATGCA
TCACTGACATTGAAAAAATGAAGCTCTCCACCAAAACACGAAAAATCTCT
TTATCGCCAAAGAAGGCTTCGTTTGTATGAATTGGAGAAACTTGGACTGA
AACGAAAGACGCTATTGGAAATTTAAAAGTGGCTTCTAAAGAAGTACTTC
GCGTCCGCGGTGAAACCGCGCGACGGATTGAAGAAAGAGATTACTGGAAA
CAGATGGATTTGAGCAAATTGAAAAGTAAAGTTGAAATTGGACCATTGCC
AAACGTTGTTATATTCTTTGAGACTTTTCACAATGCATTAGTACAAGATT
TCAATAAGAAAATTGATGACCTTTACGAAAAAGAAAAAGCTGAGAAAGAA
GAAGCATACAAACGAGTAGATGAAATTAAAAACGAACTCTTAAAAGTCAA
AGAAGACAAGAAGGTTAAAAATGAATACATTCTGATTAACAATGAGAATC
TGGTCCGTAAATTACACGAAGAGAGACAATTACGGTTAGGATTAATAGAC
GATATGCTTGATTCAAGAAGTTTTATAAACCAAGCGAAAATGTCACAGAA
GAAGGAATTATTATCAGACTTAAGAGAACAATGCATCACTGACATTGAAA
AAATGAAGCTCTCCACCAAAACACGAAAAATCTCTTTATCGCCAAAGAAG
GCTTCGTTTGTATGAATTGGAGAAACTTGGACTGAAACGAAAGACGCTAT
TGGAAATTTAAAAGTGGCTTCTAAAGAAGTACTTCGCGTCCGCGGTGAAA
CCGCGCGACGGATTGAAGAAAGAGATTACTGGAAACAGATGGATTTGAGC
AAATTGAAAAGTAAAGTTGAAATTGGACCATTGCCAAACGTTGTTATATT
CTTTGAGACTTTTCACAATGCATTAGTACAAGATTTCAATAAGAAAATTG
ATGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005913XLOC_005913Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010547-proteinTCONS_00010547-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010547-exon-sc0000107-1575043694:242368..243153TCONS_00010547-exon-sc0000107-1575043694:242368..243153Clytia hemisphaericaexon
TCONS_00010547-exon-sc0000107-1575043694:242193..242315TCONS_00010547-exon-sc0000107-1575043694:242193..242315Clytia hemisphaericaexon
TCONS_00010547-exon-sc0000107-1575043694:241135..241698TCONS_00010547-exon-sc0000107-1575043694:241135..241698Clytia hemisphaericaexon
TCONS_00010547-exon-sc0000107-1510915933:242368..243153TCONS_00010547-exon-sc0000107-1510915933:242368..243153Clytia hemisphaericaexon
TCONS_00010547-exon-sc0000107-1510915933:242193..242315TCONS_00010547-exon-sc0000107-1510915933:242193..242315Clytia hemisphaericaexon
TCONS_00010547-exon-sc0000107-1510915933:241135..241698TCONS_00010547-exon-sc0000107-1510915933:241135..241698Clytia hemisphaericaexon
TCONS_00010547-exon-sc0000107-1491911889:242368..243153TCONS_00010547-exon-sc0000107-1491911889:242368..243153Clytia hemisphaericaexon
TCONS_00010547-exon-sc0000107-1491911889:242193..242315TCONS_00010547-exon-sc0000107-1491911889:242193..242315Clytia hemisphaericaexon
TCONS_00010547-exon-sc0000107-1491911889:241135..241698TCONS_00010547-exon-sc0000107-1491911889:241135..241698Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000107supercontigsc0000107:241135..243153 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.112271	0.0547411	0.222459	0.0621832	0.113553	0.0299104	4.22202	4.93231	3.7134	4.24808	2.18961	3.23389	0.429342	0.620349	0.430322	0.188141	1.30637	1.49016	0.924939	1.15521	4.07064	3.13711	1.73783	1.55068	1.95879	2.85086	8.65948	3.90202	0.155766	0.253921
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010547 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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