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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010541 ID=TCONS_00010541|Name=TCONS_00010541|organism=Clytia hemisphaerica|type=transcript|length=1518bp
AGaaattttctctaaaaataTTGTATACAGTACACGAAATATAATCTTTA
CTTCTTTATTGTAGTTaaagattaaaaattgaaatcaaatatATATCAAC
GGAAAAATATGTCAGCAACTCGAAGCTTACAATCCGCAAAGCAAGCACTT
CGGAAAGATCTTAAAGCTAGATTACGAAAAATGACTAAAGAGGAGCGcat
caaccaatcaaaaacgATCTTCGAAAAACTCACTTCGACAGAGGTGTTCA
AGAAAAGTCGAACACTTTCATTATACCTTAGTATGTCATCAGAAGTCCAT
ACAAACGATATACTTATGCATTGTTTCGATACCggtaaaaaatgttatat
tccCCATTACACAGAAGATTATATGAAAATGGTTTTCATCAAAGACAAGG
CTGATTATGATAGTTTGCCTTTAACAGCCTGGAACATCAAACAACCAGCC
GACGATGATGATCAAAGACTAGATATTATGGATAAAGGCAATTTAGATTT
AATTATAGTTCCTGGTCTGGGTTTTACACGCTCTGGTTTGAGACTTGGGC
GTGGCAAGGGatattatgataattattttcgaaaatatgaAGAGAAATTT
GGACAGAAACCTTATCTTATTGGTTTAGCGTATTCATGTCAAATGGTTGA
AGATTTGCCGGCAGACCAATTTGATATCCCGCTGGATCAAGTTTTATTTC
CGTAATATTTCGCCTAAAACTCTAACCCGAAAGATGTAAAGACGAATCAA
GggaataaatttttgttgaccTAGAAAAATCTACCCTAGCAGTTGGGttg
gtcaaaatcaaaatttacattcattttagATATTAAAAAGTCATCAACCA
CTAGGCCGCTAGCATCCTCTCGGCCTTCGGCctctgaaaattttgaaatt
ttgaaatttatgtaTCTCTGAAAACCAGATGAATTCATTATGTCGTGCGG
ATGCAGTCTAGAGTGAGACGTTACTGGAGAATTCAGGCTGAGTACTTGTT
TAAAGCTTATCCCTCAAAGAGTAAAGTTTGGTATCTTTctgcaatgtttt
tgttgttttttgtgaAAGAGGCCAGTAGCGTAGACTTAAGGGGAGCGCAA
AATATATGTAGGAGAGCACATTTTTATAACatagtactcttaggttccaa
ataaaaaaattttcaaagaattaacaagcggggggggccgtttatttgga
acctaagagtaattatatttttatgttataaatagataattacagtgtca
taaaaatctgctctcatacacaaattttgcgcccctcctgtctacgccat
agcgtcagcccccaccctaaatttttcccaaaagaggagggggctggaag
tacaccactttttttgggggacctatgtacttggggggagctaaaatctt
ATCACTTAAAGTGGtggctaaaataattcagcttgaTAGTTGGCTacaat
tactcaaattgaaactcatgaatctgaaaaattttcccctGCGGcgcaat
atttttgtaaaaagtgtg Run BLAST on NCBI transcript from alignment at sc0000107:128964..130481- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010541 ID=TCONS_00010541|Name=TCONS_00010541|organism=Clytia hemisphaerica|type=transcript|length=1518bp|location=Sequence derived from alignment at sc0000107:128964..130481- (Clytia hemisphaerica)
AGAAATTTTCTCTAAAAATATTGTATACAGTACACGAAATATAATCTTTA
CTTCTTTATTGTAGTTAAAGATTAAAAATTGAAATCAAATATATATCAAC
GGAAAAATATGTCAGCAACTCGAAGCTTACAATCCGCAAAGCAAGCACTT
CGGAAAGATCTTAAAGCTAGATTACGAAAAATGACTAAAGAGGAGCGCAT
CAACCAATCAAAAACGATCTTCGAAAAACTCACTTCGACAGAGGTGTTCA
AGAAAAGTCGAACACTTTCATTATACCTTAGTATGTCATCAGAAGTCCAT
ACAAACGATATACTTATGCATTGTTTCGATACCGGTAAAAAATGTTATAT
TCCCCATTACACAGAAGATTATATGAAAATGGTTTTCATCAAAGACAAGG
CTGATTATGATAGTTTGCCTTTAACAGCCTGGAACATCAAACAACCAGCC
GACGATGATGATCAAAGACTAGATATTATGGATAAAGGCAATTTAGATTT
AATTATAGTTCCTGGTCTGGGTTTTACACGCTCTGGTTTGAGACTTGGGC
GTGGCAAGGGATATTATGATAATTATTTTCGAAAATATGAAGAGAAATTT
GGACAGAAACCTTATCTTATTGGTTTAGCGTATTCATGTCAAATGGTTGA
AGATTTGCCGGCAGACCAATTTGATATCCCGCTGGATCAAGTTTTATTTC
CGTAATATTTCGCCTAAAACTCTAACCCGAAAGATGTAAAGACGAATCAA
GGGAATAAATTTTTGTTGACCTAGAAAAATCTACCCTAGCAGTTGGGTTG
GTCAAAATCAAAATTTACATTCATTTTAGATATTAAAAAGTCATCAACCA
CTAGGCCGCTAGCATCCTCTCGGCCTTCGGCCTCTGAAAATTTTGAAATT
TTGAAATTTATGTATCTCTGAAAACCAGATGAATTCATTATGTCGTGCGG
ATGCAGTCTAGAGTGAGACGTTACTGGAGAATTCAGGCTGAGTACTTGTT
TAAAGCTTATCCCTCAAAGAGTAAAGTTTGGTATCTTTCTGCAATGTTTT
TGTTGTTTTTTGTGAAAGAGGCCAGTAGCGTAGACTTAAGGGGAGCGCAA
AATATATGTAGGAGAGCACATTTTTATAACATAGTACTCTTAGGTTCCAA
ATAAAAAAATTTTCAAAGAATTAACAAGCGGGGGGGGCCGTTTATTTGGA
ACCTAAGAGTAATTATATTTTTATGTTATAAATAGATAATTACAGTGTCA
TAAAAATCTGCTCTCATACACAAATTTTGCGCCCCTCCTGTCTACGCCAT
AGCGTCAGCCCCCACCCTAAATTTTTCCCAAAAGAGGAGGGGGCTGGAAG
TACACCACTTTTTTTGGGGGACCTATGTACTTGGGGGGAGCTAAAATCTT
ATCACTTAAAGTGGTGGCTAAAATAATTCAGCTTGATAGTTGGCTACAAT
TACTCAAATTGAAACTCATGAATCTGAAAAATTTTCCCCTGCGGCGCAAT
ATTTTTGTAAAAAGTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010541-exon-sc0000107-1575043694:128964..130481 | TCONS_00010541-exon-sc0000107-1575043694:128964..130481 | Clytia hemisphaerica | exon |
| TCONS_00010541-exon-sc0000107-1510915933:128964..130481 | TCONS_00010541-exon-sc0000107-1510915933:128964..130481 | Clytia hemisphaerica | exon |
| TCONS_00010541-exon-sc0000107-1491911889:128964..130481 | TCONS_00010541-exon-sc0000107-1491911889:128964..130481 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000107 | supercontig | sc0000107:128964..130481 - |
Blast
BLAST of TCONS_00010541 vs. Swiss-Prot (Human)
Match: MTHFS (5-formyltetrahydrofolate cyclo-ligase OS=Homo sapiens GN=MTHFS PE=1 SV=2) HSP 1 Score: 166.392 bits (420), Expect = 1.248e-47 Identity = 81/197 (41.12%), Postives = 126/197 (63.96%), Query Frame = 1
Query: 115 ATRSLQSAKQALRKDLKARLRKMTKEERINQSKTIFEKLTSTEVFKKSRTLSLYLSMSSEVHTNDILMHCFDTGKKCYIPHY--TEDYMKMVFIKDKADYDSLPLTAWNIKQPADDDDQRLDIMDKGNLDLIIVPGLGFTRSGLRLGRGKGYYDNYFRKYEEKFGQKPYLIGLAYSCQMVEDLPADQFDIPLDQVLF 699
A ++ SAK++LR +LK RLR M+ EER+ QS+ + +K+ + ++KS+ +S++LSM E+ T +I+ F GK C+IP Y ++M MV I+ + LP T+WNI QP + D R + + G LDLI +PGLGF + G RLGRGKGYYD Y ++ + KPY + LA+ Q+ +P ++ D+ +D+VL+
Sbjct: 2 AAAAVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQDEIETEEIIKDIFQRGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPG-EGDVREEALSTGGLDLIFMPGLGFDKHGNRLGRGKGYYDAYLKRCLQHQEVKPYTLALAFKEQICLQVPVNENDMKVDEVLY 197
The following BLAST results are available for this feature:
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