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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010540 ID=TCONS_00010540|Name=TCONS_00010540|organism=Clytia hemisphaerica|type=transcript|length=1973bp
GCAATATGTGACTACTTAGTAGActaacctttgtttttctcGAAGTATAT
TTTCCAATTCCTCCAGTAATTTAAGtcttttccataaaaaatagCAGTCC
ACAAACTAGACCCACTCACCCctcgtttgaaaattttggaaatacagtca
actctctctctaattcgaacctcttttattcaaatttttctgtaattcga
actaaagcaTTTTTCCCTTTAGCTTAAGAAGTTGTATAAATTACTTTCTG
TTATTCGAACtttttctctaatttgaagaaaatttttggtcccttgaaga
tcgaattagagagagtcaactgtttTACCTTTTACTTTATGgacattttt
tttgttgaaaaccgATTTCCCCTATCAACACAGTTAATACAACCGATACA
AACTCGATCTTATATAGTAGCACTATTTGACATTTCAATTTGAAGACATG
TCTTTTATTTCCTTATGTGTTCGCAGATTAGCACTTGAAGAGTTAAGTAG
AGGAGCCAAACGAGCAAAAGAACGAAGTCAAACTATGGGATCTCTGGGAT
GGAAGAACAGTCCAATTCCATCAGCCAACAAAAGATATCTTCAAAACACA
CTTCGTTCAACCATACAAACAAATAAACGTTTGGACGAGAAATCATCAAA
AAAGGAGAAAGCTCATTCGTCGAAAAGGGAAAGAGCTGATTGTGATTGGT
CGAGAGAAAAATCACGTGATGATCAACGTCGTGATGACTTCAGTTGTAAA
AGACGCTGTGATGATGACGATATAAACAGATATAGAGATAGAAATGAAAA
ATCAAGAAGTGAAAAAGAACGTTCCTCGAAGTCCTCAAAATAGTGAACAA
TGTTTTGTGGTTTGTCAGTCGAAGGTAataaagcccgggggggggagcAC
TGACGATGACGGCCGACGgtgacgtgccgctggagttcgaaaagttgacc
ctgtcagatatgaatttttggtaaaatggtgaccctgtcagaacgaaaaa
tttaaaatattctcGATTTCCACCCTaacaagtggcaaaaatgactaaaa
gtagacgaaaaactgaaagatttttacCCTGAAAAATCGTCCAAATTATC
AAAAGTGGACCttgtcagatacacatcttgaaaattagtagatttgggac
cctgttagatatcttcagagcctgaAAAAGGGACCCAGCAGCACGTCCCG
TACCCACTTTTGCCTAAGCCCCCTCCTCCCGGGTAATAAAGCTCTCATAG
gatgaaaaaaaaggaaaaataatttcGCTAAGTCATTGTATATGAACATA
TCATGAAAATTTACCTTAGAATGGGAGCGCTTATACCCAGGCTTGTACTT
AGTTCGATTTTGATACCGATTGCACCACATCCATTAGGAAGAAAAACTGC
GTGACTGGCTACAATATTAAACTGCACCAacacattttttttacaaacaa
cTCCGATTTTTGGGTCAGGGCTAAGGTTGCTTTGCATTCTTgcccatttt
ctgaaaaatttgtattaaccacccctgatattatataccttatcggggga
aagtgacgaaaattttgaggggatGACGATTTTATCacctgaccaaaact
tttactagATTTTTCCTCCCCCAActatgcctctaggtgacgaaattttt
ccccgacgaaaaaaagcCCCAACTAAATAAAactttttccccgataaggt
atatttaTTCTTATTGAGGGCTATCGTTTGCTGtgcttagattatctaaa
aagcttttacctTACGAGATAGTGAAAGGTTGctaataaaaaatgtgtac
catGTGGATGACCCATTTTTACCGTGCAAAAGCTATTACTTATAAAAATT
CTGTTACACTTTTTTTCGGACTGTAAATATTCGATAATATTCTAATTTAA
TTTAAATAAATGAGTAAACTTGAACTTTGAAATACTTTATTTTATcaaca
aatgaataaaaacattATACTGA Run BLAST on NCBI protein sequence of TCONS_00010540-protein >TCONS_00010540-protein ID=TCONS_00010540-protein|Name=TCONS_00010540-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MSFISLCVRRLALEELSRGAKRAKERSQTMGSLGWKNSPIPSANKRYLQN
TLRSTIQTNKRLDEKSSKKEKAHSSKRERADCDWSREKSRDDQRRDDFSC
KRRCDDDDINRYRDRNEKSRSEKERSSKSSK Run BLAST on NCBI transcript from alignment at sc0000107:124399..127069- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010540 ID=TCONS_00010540|Name=TCONS_00010540|organism=Clytia hemisphaerica|type=transcript|length=2671bp|location=Sequence derived from alignment at sc0000107:124399..127069- (Clytia hemisphaerica)
GCAATATGTGACTACTTAGTAGACTAACCTTTGTTTTTCTCGAAGTATAT
TTTCCAATTCCTCCAGTAATTTAAGTCTTTTCCATAAAAAATAGCAGTCC
ACAAACTAGACCCACTCACCCCTCGTTTGAAAATTTTGGAAATACAGTCA
ACTCTCTCTCTAATTCGAACCTCTTTTATTCAAATTTTTCTGTAATTCGA
ACTAAAGCATTTTTCCCTTTAGCTTAAGAAGTTGTATAAATTACTTTCTG
TTATTCGAACTTTTTCTCTAATTTGAAGAAAATTTTTGGTCCCTTGAAGA
TCGAATTAGAGAGAGTCAACTGTTTTACCTTTTACTTTATGGACATTTTT
TTTGTTGAAAACCGATTTCCCCTATCAACACAGTTAATACAACCGATACA
AACTCGATCTTATATAGTAGCACTATTTGACATTTCAATTTGAAGACATG
TCTTTTATTTCCTTATGTGTTCGCAGATTAGCACTTGAAGAGTTAAGTAG
AGGAGCCAAACGAGCAAAAGAACGAAGTCAAACTATGGGATCTCTGGGAT
GGTGAGCTAAAAAAATTTCAATTACGATACAAGAACAAATTGGTCTTAGG
TTTCATCGTCACAACTCAGGGGCTCTCGGTTCGAGACCCCGCTTCTTCCA
ACGATNGGTGTCATCGTCACAACTCAGGGTCTCTCGGTTCGAGACCCCGC
TTCTTCAAACGAACTTTTTAGTTCATAGATAGCTAAGCTGGCTGGCACCG
CGTTTAAAAAATGTTTAAAAAACCTATAGATCACAAGGATATCCACATAA
AATATTGACACTTTCTATAGAACTTCAGTTAACTGTTATGGTCAGATCGA
TAAATTTTTGATGTAGTGTACCGGGCGTGTCCCAATGAATACGGTCTCCC
CCACAGTAATTTTTTTACGGCTCGGCTATTTTCATTTCTTTGAGCACTTT
GAGACTCAAATTATTATTCTCCTGTTTTCAACTTATCCTTTGAACAAAAC
TGATCTATTTAGGCTTTCATAACCAATTTTAACTAAGTCTAACTCTAAGA
TTGTTCAAGGGAATGAATGTGAATCAGGGTACTAGCTTTATTTTTTTCTG
ACAAATAAACTTCGTCAAATTCTTATCGAAAAATCCCAATGGGAATATCT
AGTAAGAATTTCCTTGGAATTGTCAAATCCTCATCATAGCCAGCTTTCAG
AATTCGAGACTTAACCAGCACTCTCGTTAAAACGATTCCCTGTCTTTAGG
AAGAACAGTCCAATTCCATCAGCCAACAAAAGATATCTTCAAAACACACT
TCGTTCAACCATACAAACAAATAAACGTTTGGACGAGAAATCATCAAAAA
AGGAGAAAGCTCATTCGTCGAAAAGGGAAAGAGCTGATTGTGATTGGTCG
AGAGAAAAATCACGTGATGATCAACGTCGTGATGACTTCAGTTGTAAAAG
ACGCTGTGATGATGACGATATAAACAGATATAGAGATAGAAATGAAAAAT
CAAGAAGTGAAAAAGAACGTTCCTCGAAGTCCTCAAAATAGTGAACAATG
TTTTGTGGTTTGTCAGTCGAAGGTAATAAAGCCCGGGGGGGGGAGCACTG
ACGATGACGGCCGACGGTGACGTGCCGCTGGAGTTCGAAAAGTTGACCCT
GTCAGATATGAATTTTTGGTAAAATGGTGACCCTGTCAGAACGAAAAATT
TAAAATATTCTCGATTTCCACCCTAACAAGTGGCAAAAATGACTAAAAGT
AGACGAAAAACTGAAAGATTTTTACCCTGAAAAATCGTCCAAATTATCAA
AAGTGGACCTTGTCAGATACACATCTTGAAAATTAGTAGATTTGGGACCC
TGTTAGATATCTTCAGAGCCTGAAAAAGGGACCCAGCAGCACGTCCCGTA
CCCACTTTTGCCTAAGCCCCCTCCTCCCGGGTAATAAAGCTCTCATAGGA
TGAAAAAAAAGGAAAAATAATTTCGCTAAGTCATTGTATATGAACATATC
ATGAAAATTTACCTTAGAATGGGAGCGCTTATACCCAGGCTTGTACTTAG
TTCGATTTTGATACCGATTGCACCACATCCATTAGGAAGAAAAACTGCGT
GACTGGCTACAATATTAAACTGCACCAACACATTTTTTTTACAAACAACT
CCGATTTTTGGGTCAGGGCTAAGGTTGCTTTGCATTCTTGCCCATTTTCT
GAAAAATTTGTATTAACCACCCCTGATATTATATACCTTATCGGGGGAAA
GTGACGAAAATTTTGAGGGGATGACGATTTTATCACCTGACCAAAACTTT
TACTAGATTTTTCCTCCCCCAACTATGCCTCTAGGTGACGAAATTTTTCC
CCGACGAAAAAAAGCCCCAACTAAATAAAACTTTTTCCCCGATAAGGTAT
ATTTATTCTTATTGAGGGCTATCGTTTGCTGTGCTTAGATTATCTAAAAA
GCTTTTACCTTACGAGATAGTGAAAGGTTGCTAATAAAAAATGTGTACCA
TGTGGATGACCCATTTTTACCGTGCAAAAGCTATTACTTATAAAAATTCT
GTTACACTTTTTTTCGGACTGTAAATATTCGATAATATTCTAATTTAATT
TAAATAAATGAGTAAACTTGAACTTTGAAATACTTTATTTTATCAACAAA
TGAATAAAAACATTATACTGA Coding sequence (CDS) from alignment at sc0000107:124399..127069- >TCONS_00010540 ID=TCONS_00010540|Name=TCONS_00010540|organism=Clytia hemisphaerica|type=CDS|length=792bp|location=Sequence derived from alignment at sc0000107:124399..127069- (Clytia hemisphaerica)
GAAGAACAGTCCAATTCCATCAGCCAACAAAAGATATCTTCAAAACACAC
TTCGTTCAACCATACAAACAAATAAACGTTTGGACGAGAAATCATCAAAA
AAGGAGAAAGCTCATTCGTCGAAAAGGGAAAGAGCTGATTGTGATTGGTC
GAGAGAAAAATCACGTGATGATCAACGTCGTGATGACTTCAGTTGTAAAA
GACGCTGTGATGATGACGATATAAACAGATATAGAGATAGAAATGAAAAA
TCAAGAAGTGAAAAAGAACGTTCCTCGAAGTCCTCAAAATAGATGTCTTT
TATTTCCTTATGTGTTCGCAGATTAGCACTTGAAGAGTTAAGTAGAGGAG
CCAAACGAGCAAAAGAACGAAGTCAAACTATGGGATCTCTGGGATGGAAG
AACAGTCCAATTCCATCAGCCAACAAAAGATATCTTCAAAACACACTTCG
TTCAACCATACAAACAAATAAACGTTTGGACGAGAAATCATCAAAAAAGG
AGAAAGCTCATTCGTCGAAAAGGGAAAGAGCTGATTGTGATTGGTCGAGA
GAAAAATCACGTGATGATCAACGTCGTGATGACTTCAGTTGTAAAAGACG
CTGTGATGATGACGATATAAACAGATATAGAGATAGAAATGAAAAATCAA
GAAGTGAAAAAGAACGTTCCTCGAAGTCCTCAAAATAGATGTCTTTTATT
TCCTTATGTGTTCGCAGATTAGCACTTGAAGAGTTAAGTAGAGGAGCCAA
ACGAGCAAAAGAACGAAGTCAAACTATGGGATCTCTGGGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010540-exon-sc0000107-1575043694:126519..127069 | TCONS_00010540-exon-sc0000107-1575043694:126519..127069 | Clytia hemisphaerica | exon |
| TCONS_00010540-exon-sc0000107-1575043694:124399..125820 | TCONS_00010540-exon-sc0000107-1575043694:124399..125820 | Clytia hemisphaerica | exon |
| TCONS_00010540-exon-sc0000107-1510915933:126519..127069 | TCONS_00010540-exon-sc0000107-1510915933:126519..127069 | Clytia hemisphaerica | exon |
| TCONS_00010540-exon-sc0000107-1510915933:124399..125820 | TCONS_00010540-exon-sc0000107-1510915933:124399..125820 | Clytia hemisphaerica | exon |
| TCONS_00010540-exon-sc0000107-1491911889:126519..127069 | TCONS_00010540-exon-sc0000107-1491911889:126519..127069 | Clytia hemisphaerica | exon |
| TCONS_00010540-exon-sc0000107-1491911889:124399..125820 | TCONS_00010540-exon-sc0000107-1491911889:124399..125820 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000107 | supercontig | sc0000107:124399..127069 - |
Blast
The following BLAST results are available for this feature:
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