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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010532 ID=TCONS_00010532|Name=TCONS_00010532|organism=Clytia hemisphaerica|type=transcript|length=662bp
GCCAAAGTGTACTTTTGCTAAAACATTCAAAGCTTTAATTGTCTTATATT
ATAAATTTATAAATTGTTCAACTTAATATGGCACAGATTAATGGAGAGAG
AGTTGAAAAAGAGCTTGATTTCGATAAAATTGACATAAATTCCAAACGCA
AAGAATATTTAAGTTGGGAAGACTATTTTATGGCAACAGCTTTTCTAGCA
GCTCAAAGAAGTAAGGATCCTTCATCACAAGTGGGTGCTTGCATTGTAAA
TGACGAAAAGAGAATTGTTGGAGTAGGCTACAATGGGATGCCAACTGGGT
GTGATGATGAAGAACTGTCATGGTCAAGAGTTGGAGAAACATATTTGGAT
ACAAAATATGCTTATGTGTGCCATGCTGAGATGAATGCAATCATGAACAA
AAATTCTGCTTCTGTCAAGAATTGTACCATATATGTAGCTCTTTTTCCTT
GCAATGAATGTGCAAAGCTCATTGTCCAATCTGGAATCAAGGAAGTTGTT
TATTACTCAGCAAAAAATGGTGAATCTATGGAAGCTAAAGCATCCCGAAA
AATGTTTGAATTGGCTGGGATTAAGTACAGGCAGCATATtcctaaagaag
aaaaattagtGATCGATTTTTCTGtcatcaataaaaacaaatctcAACCA
ACTGGCATGAAG Run BLAST on NCBI protein sequence of TCONS_00010532-protein >TCONS_00010532-protein ID=TCONS_00010532-protein|Name=TCONS_00010532-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MAQINGERVEKELDFDKIDINSKRKEYLSWEDYFMATAFLAAQRSKDPSS
QVGACIVNDEKRIVGVGYNGMPTGCDDEELSWSRVGETYLDTKYAYVCHA
EMNAIMNKNSASVKNCTIYVALFPCNECAKLIVQSGIKEVVYYSAKNGES
MEAKASRKMFELAGIKYRQHIPKEEKLVIDFSVINKNKSQPTGMK Run BLAST on NCBI transcript from alignment at sc0000107:528453..545228+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010532 ID=TCONS_00010532|Name=TCONS_00010532|organism=Clytia hemisphaerica|type=transcript|length=16776bp|location=Sequence derived from alignment at sc0000107:528453..545228+ (Clytia hemisphaerica)
GCCAAAGTGTACTTTTGCTAAAACATTCAAAGCTTTAATTGTCTTATATT
ATAAATTTATAAATTGTTCAACTTAATATGGCACAGATTAATGGAGAGAG
AGTTGAAAAAGAGCTTGATTTCGATAAAATTGACATAAATTCCAAACGCA
AAGAATATTTAAGTTGGGAAGACTATTTTATGGCAACAGCTTTTCTAGCA
GCTCAAAGAAGTAAGGATCCTTCATCACAAGTGGGTGCTTGCATTGTAAA
TGACGAAAAGAGAATTGTTGGAGTAGGCTACAATGGGATGCCAACTGGGT
GTGATGATGAAGAACTGTCATGGTCAAGAGTTGGAGAAACATATTTGGAT
ACAAAATATGCTTATGGTAAACacacaaaaagatttttagaataattcta
tattcttttaaaaatggaaATAATTGTAATAGTGAATAGATTCGCATCAC
TTTTGAAAACAGTTCTGTAGCcaagtttcaaaataattattttaatttgG
GTCTTAGTCTTATATCCAAGGCATCAAGTCTGCTGGTGACGACTTTTAGT
TTTTCTTggttaggcggcaatcacaaatatcttcgtttcgcgtcgcccga
ccgactcctgaaaattgagtaaaattgagTCGGAGAGTCGGTAAATTCTT
cggactttttgttttgatgacgtttcctttgctcaaaaattttattattg
ccaatttttgtgagcgatttctagcacattcgcagcattttaactttgtt
tatcattacacgtGCCATTATGTGTCAAAGGTCACAGTGTTTAAACTTCA
TAATCTGAAACCACACAAAACATGCGCGCGATTGGGCCTCCTGCCGCCTC
AGTTAACGCCCTTTTACCTTTTACCGCCTCACagaccaattttaagaaaa
cccgaaaatttttactacCGACCGTCCGAcggactcactttttagatcca
acgaggacgcgaaatgaagatatttgtgattgccgccttattgTCAGTTT
GTCTGTCAGGGCTGGTTTCTTTTGCTCATAATTATTTAGCAATTTGTGTC
AAAGTCGGACGATCGTAACCATTTTCGATCGTAACCTCTTCTTCTCAAAA
CTGTTCGTCACAGTATCTTGTGAGCATGATTGTGAAACCGGTAAATACCG
TAGAatcgtttaatatcgacatgcgtcttctaaaGTCGACActggatctg
taaaataatcaaaacaaaccttgaatgaaattcttggtatcattctttct
tatcaaacaagttcatccatcaaactagaagttcaataaacattgcaatc
ctttcaattaaaacaaGACGCCTTAgtggcgtgaaggcccagcaattGTC
TTCTTATTTTATGTTGTTTACGCTTATGCGAAATACGCTTGTAAATTTTT
TATCTGCCTGTGTTTAATTTACGTGATTGCGAGGTACATTTTCTTTATGT
CTGAATCTGATATTGGACgctttttgtactatttttccTGTTACAACTAC
CATATATAGAGGTTTAAAATTTGAACTAATTGATTAGGCACTTATAAAAG
GGATCAATTATTTTGCTAGTTTGGTATACACAGGGAAATGAactaaaata
atgtttttccTTTGAAGAGATAATTATTTGTATGAGGGTTTTATCTCATA
GTAGATCTTTAACAAGGGAAGTCATAGGTAAccgacaattaaaaaaaaaa
tactacataTATACAGCTGCATAAACTAAgctttaaaaaattataaaatt
gaaTTAAAGTTACAAAACGCACCATAATAAACAATcctttaatttttcat
taaatctTAATCATATTATTTTAATTGTTGAAAAAAGCCAACATTTATTA
GACGATGATCTCATATTTACTGAGAAATTTCAACGTTGACAATTTggaca
aaattcacaaaaaaagtaTGGCATTCTAATTTTGTTTAAGATTTCAATTA
ATAGTATATTAAGAAAGGTAGTCAAAAGATTTCCCACAAACAGTTAGTCA
CATTAGCTTCCAACCTAAATGCTGCCATTTCACTATATTGGTTACTTGAC
TcgaaagcaaaaaaatgcgtcACAAAACTTCTAAtaggattcatgaaaaa
ataaactgacgctttttaatgaaattaatttttatgagaaattaccaaaa
ttttgagccatagatgaaaaaaattgaactgaGCCAAggttgaaaactaa
tttgaagaacaacttcTCAAGAAGAAAATATTCAGGGGAGAAGACACCCA
CCTAGATCCATGCACCAACAAATAGGCTATTTCCCAGAATTTTTTCCCGA
CTTCCATATCTctgttatattttgaaaaagaattttcccataaaacaatg
aaatgtgCGATTGAAGTAAAGATGGCAGGTGAAGCGAAGGATGgaattgt
taaaaaattcagacaatttTGCGACTNGAAGTAAAGATGGCAGGTGAAGC
AAAGGATGGaatagttaaaaaaattcagacaatttTGCGACTTCCTGACT
CAAAATAATCGGAAAATTAAGAGAAATTATCAGTCGGTCGGACGacaaac
acaagttatttgtgattgtgGCCTAAACCAATCCAGATATTGGTAAACAA
TGACTGTTATCAGTAAAATCTGTAAAGTTATCGGTAATCGAACGAATTGC
TACATGGAAGGTCACATATCTCAAATATCTTTGGTCGTTTTTAAGCATTC
CATTTGCCTGAACCTTTAGACCTTCAAATAATACCAAAAGTGCAATCAAA
TCTATATAGAGTTTCTTCAGGAAATTTGCAATTCAATTTGATTGTCCATT
CTGTTTGATTGGATATGATATTGACTCAAAAGTTTGACTTTTATAGCGTG
ACCTGACCAATCCAACGTTtgctctgttttgtttttgccatATATCAATT
TTGTTTAACTGTATATCAATAAGTATTTTATACAatacatatatatatat
acatcTGTGATAAAATTCTACCCAAAGCTGATATGATAATCAGATTGTCA
TAATCATATAAAAGTCCAATAAGTTTCATGGTGTTTCATGCATCATGTTG
GCATGGCACAATGTTGAATAACGTCAATATAATGTAAACAATGGTAGTAA
AAACTTGCATGAAGATCATAATCATCCGCCAGCATGATTCAACACcattg
attttttggaaattttatttccaGTCACCAACCATTTCATATTGATTTGT
CttgtttttcttgtaaaaaagttgTAGTGTACCGGTAGCTACTAGCTAGT
TATTGATTGCTCGCTTAATACTCGAGCAAATCTTAATATGAATCAAATAG
TTGTGTCATGTTGGCATGAATGAAGAAACCAAGCTTCAACGTAAGTTTGT
TGTGTTTTTTTGGATGCAGTCATCAGCCATCTTTTGATTAACTTCCTTTG
GAATTAAATTGGAATTCATGTCTTATCTTTTCGTTATCCTTTCCAGTCAA
ATACATCCAGTCGGGTTCATGTTGAATGTACTCCTGACTGTATTATATCT
AACATTACATAATAACAGAATAATAATAGAACAACATAACGTATAATGCA
GTAgtataatacacgttttttctttattagaacccagtttataagaacat
ttaggctaaaattcgtcgaaaaattaagaacatcgtaagaacatgcccag
cctcagtttggaaaaatatgacaagaaactacaatttttcctcttttcaa
gcagctttaaccaaacttagggatggattttctaaaatcgagagtcaata
TTGTCCAAATATTACCAactttaagtgctctttattttgcatgatgttgt
cgatttaaagtagtccgaaaaattaagaacgcatttaagaacattttagg
ctgaaaattgctaaaaaaataagcacatccaggctcagccaaattttagg
tgttctaataaaaaaaaacgtgtacacaatTTGCAAACACCGTAGTATAA
TATAACATATTATATAATTCATTTAAACACGAATGCATCCAGTCGGGTTC
ATGTTGAATGTATGGAAGCTTTTAGCCTGTAAACCATAAAACCCGTGTGA
TGCGCAAACACATGGGAGACTCTAGCGTAACAGCAAAGGGCTAATGAAAG
GCCCGTATGCTATcgctgggccaaaaaacagccaaattataagcagtttt
acacagcacacgaaacgcatgcaaacttcctcgtaactttctcgtgtcca
tcattaaaattttacaactttattacgcttcaagtcacgtgataaaaaaa
attcgcgcgcttagcctggtttccccttccttcgTTCCGTtgaatgaaag
catgctaattattttttagtgactacatcgttaaagttttcttttaaaaa
aaaacgcacttcacgtttcttacatgtcaacaatctgtgacgtgataggg
agggagagtacaatttagtgattgattgataactttggtatgtatttgtt
tatgtttgattttttatttcgaggaccagcctacagctatgtcaaAATAA
CAAGACAcatgtcgatattaaacgactctacggtatacCTTTCAACACCT
TTAGCTTCTTTGCatttataccgtcaactgctctaacttgggacgattgg
tcgaaacatgggactgtttgatatctggcctgtattttcacttactgtta
aatttttttgacaaatttgttttgatcagTTCATCATAGAGTgtcatata
aacaaaactcaacatctTTGAAAAAGTTGTCCTTTTGATTTCCCATCGTT
TTGCAACTAATTTGTTCTTTGTTCCAGACACTCCCGTATGTTTCACTacc
aatttttttcatatttcaatttaaaagcctaccctgtgcaaaagagaaat
tgtgtattttttgatacgccgttcattaactcgaATCAAATTACTATGGA
GGtccggtgaaatggtggccgaattaccgtcccatgttttgtcagatagt
cccaagttagagcagttgacggtaactaacgaccttttttttaaatgttg
tcATTTTATACTGAATCCTGATAGATACAAGTAAAAGGTAAGTTgaaatc
actgattgaaaaaggttATCTCCTCTCTGACTGCTAATTAGCGACTTACG
ACTCCAACCTTCTTCCCAGCTCTAAAGTACCGTAATTTTGTGTAAAGCCT
ACCATGAGATACAATTTGAAATGAGATCCGtagttaatttgttttgaaat
tttgcagctttgattggtcagtcatttgagggctatgtaagtttccctcc
actcatgcaagttacccgacttcacggtacatACCTTGGTTGATTCTTTC
ATAGCAACTATCTTGTCTGCTAAGTAGTCAGAGTGATTTTCTTAAACACC
TTTCTCAgacagttttatttataaacacTTGAATAATCAGATAGTATGGt
ggacaggagacccgtcctgtatttttataatctgataatatacaggacgg
gtatgacctgtgaggcagatttctgcctcaaaaaatttacagtgggaaat
tcgaatttagcgctgtcctcacttactaaagtAAAAAGCAAATTTCGAAA
CTTGCGTTTTTTCttagaaagtgtgaccagtgaaagaataacagaatttt
attggctatgttttcacccatcttGGGAAATTCAACCcaaaccatgctat
atattttgccatcagtatataaGATCAGAAATCATAGcgtggatctccag
gctaataGTATGGTGGAAATAGACAAGGTATGTCAGCATTACACAAAGTA
ATGGTAGGGTGTCGAAATTGAATTAGAGATGTTGACATTAAACCAACTTA
CAGTATTGTTAGAAACTTCAGCatcgaaaaaaagttaaaagaaatATTAC
CTAGTAGAATGCAAATAAAAATTACTCCAGCATACCTTACATATGACCCA
AGGTATGGCCTGAACATTATTGGGCCACTCATCGAATTTGGACTTTAAAA
AGTTCTGAACATGACCTGAACTGGCCCGAACACATGTTTGGACATTTTGG
GCCAGGCCCTCAAAGGTGAAAATCCTAAATTTTGTGGCATGAACATTAAT
GTTTAGATCAAAAGAATGTTTTGCCATTTTGACCTAAACAAACAActatg
tttttaatcaaatgtCAACTTGCTCCATGAGGTTCTACCCCTTAACataa
atgttttttgtttttttcgaagCTTTTGGAAGATCCTTATTGGAACAATA
AAATAACTTTgtgatttaaaaataaatactcTCAAAACATTTAATGACTT
TTCAATAATTAGTTATTGCCAAATCAAATTAATTATCAAATTAGATTCTT
AAGGGGCATTGATTACTAATAAGTAAGACCAGAATTTGGGCATGACTTTG
GGTAATATACCAACAATGTCTAATACTACCGACAAACTGACGGGCTAGCG
ATGGGTAGTCCCCCAGCTCCTTATTTGGCAAATGGTTGGCTCAGTCAATT
TGATGGAAAAATCAAAGGAGAAGCGCAAATCTTTGGAAGGTATATGGATG
ATATATTACgtaatatcaaaacaaaccagatcgaaaacaaactaaatgaa
ataaatgaattccatccaaatctaaaATTTACTTGCGAACGCGAGGATAA
AGGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTAGACATGAGGATCATACATTCTGG
AAATGAATTAACATCGACATGGTACACGAAAAATACTGATACTGGTTTAA
CAATGAACTTCCATGCACTGGCACCAATCAAGTACAAGAAGTCCAATGTC
ACCGGGATGGTATATCGAATTCATCGTGCTTGCAGTacacctgaaaattt
caaatcaagcATCAAAAAAGCAAAATCCATATTACGAAAGAATCAATATC
CTCCTTCATTTTACGAACCACTTATTAAAAAGACCATTGAAAAGATCACA
AAACCTCCGCAAACAGAAGAACAAAAGGATGAGGAACcagaaatgaaaaa
gttttttctttgataTCGAGGTAAAATTACCGAGCAGTTTCAACATTCAT
TAAAAAGGGTCGGCGCTCCAGTGAAAGTTATTTTAACGATACGAAAACTT
AAAACGTTGTTACCATCATTGAAAACACCTGTTGAAAAAGAATACAAAAG
TTGGGTAGTTTATCAGATAAATTGTTCACGCTGTCAGTCGTAGTAGAGGG
CATATTGTAAAATCgctggaatgttttgatcaaagcacttgttttacatt
tttggaaagctaaggggtaagggaatcgaaattacaatgtttccaatttt
ttttcggacactttggtgtgattttcggacaaatatgacggtctcaggca
aaaatcatagggttaaaaattNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNatatatctctaatcttaattttttgagagctttccaaaaatat
acaacaggtctccgttttctcgagctaaaattttcattaacttttagacc
gtcatatttgtccgaaaatcacaccaaagtgtccgaaaaaaaattggaaa
cattgtaatttcgattcccctaccccttagctttgcaaaaatgtataaca
agtgcttctaacaaaacattcgagcgattccaaaaaatcgtacaaaattc
cccctactatcgTGTTATGTTGGGCAAACAGCCAGACATCTTTTATCCCG
TATTCGAGAGCACAGGAATGCTAATACACCAGTGGGAAGCCATTTTCGTA
GCTGTAATGTTGAACTTAAAATGATTGATGTGAAAATAATTGCACAATCA
GCTAAATCTGAATTTCATCTTATGGCCCTTGAGGCCTTATGCATTCAAGC
CATTAAGCCTTCTTTGAACACAAAGGAAGAGTTCAAAAGTAGAACGCTTG
TCTTGAGAATTTGAATTGTCATGGGATAAATGATCAATTATCATGGGATG
ATTGATCAATTATCACATGCCAGTTTTGAATTCTTNAATGTCTAATATAC
CAATGACGTCCCAATGGGCTGTCAAATCCAGTACCTCTGGGATTAAAGTA
CCTTTGGTAAATCCTGTTAGTTGTTTGGGCATTAATACTTAGCAAAATAA
TAACATactaaaaatgagaatttaTTCCTTATTACAGTGTGTCATGCTGA
GATGAATGCAATCATGAACAAAAACTCTGCTTCTGTCAAGAATTGTACCA
TATATGTAGCTCTTTTTCCTTGCAATGAGTGTGCAAAGCTCATTGTCCAA
TCTGGAATCAAGGAAGTTGTTTATTACTCAGCAAAAAATGGTGAATCTAT
GGAAGCTAAAGCATCCCGAAGAATGTTTGAATTGGCTGGGATTAAGTACA
GGTATGACAACTGATCcatttcttcattttatttggtcTAAAGTTTAGAG
TCAGGTGCACCTAGGAAAGGCTGATATAGTTTTTTTTGATGTCGTCTCTT
TGATATTGTTTTTGAGAGAGTGAATCCTTGTCAACACTTCAAACAACTAC
TTGGCAGTCAGCCTTTTGCATTTTTGCAATGTTGTGGTGTTCATAATTca
acaaaaagtttattttgacTCTATTGAAATTATTTGGGCATTTTAATGTT
GCAGATGTGTGTTTCAAAAAGCCTAAAGAAACTGATGAATGAGTGTTCTC
GTAAACGACCAATCAACATTTGAATCCTCAGATTTAAATGCCGACAATCT
AGATAAAGCAGACTGAACCATagacaaagataaaaaactagactgtggaA
TAGTTCAGCGTCTGGATATACAGGCTATAAAGTTACAATTCCTTGAGATT
TGNAATAGTTCAGCGTCTAGATATACAGGCTATAAAGTTACAATTCCTTG
AGATTTGAAACTAAGAACAGTACTGAAttacaattttcaaatattttctt
tacaATTCACAGGCAGCATATCCCGAAAGCAGAGAAATTAGTTATTGATT
TTTCTGtcatcaataaaaacaaatctcAACCAACTGGTATGAAGTCTTCA
GCTATGAGGAAATGATTTTAATAAAGTACATCGTTTTATTGTATCTTACT
TTACCCTTGTTTTCTGAGAGGAAACAATATAAAACTGAATATATATGATG
ATCAACATCAATAAAGTTTATTATCAACTAAACTGTGTAAATGggatctt
ccagaaaaaattgaatatggggggtggaggatatataacatttttttggg
aaatttacccccggacattgtgaattttgaccccccTGACAACAGATCTT
ACCcacggacaagcatcagttgactccccagacattcaaaatcaccccta
TACAGAGCAAGTTTGTCcccaaaacaaggcaaatttttcagatttcacAC
TATCCTCAGGCAAAATATCCAattatcctccacccccatgtacaaatatt
ttctggaagagcccaattagTTGTTATGTAAATAAGAGTGgtgtaaaaaa
tataatatttggACAGTCatttagaaatattattttaaaatcgACAAATT
CTTTTACTGTAAAATAGTATGATATTAGTAGAAGCAGATGTCATTTTGTA
ACTATTATATAAATTAATAgctgtaatttttttgtacaaagaatGATATG
AAAATCACCTCTCCTTGCGTTTAATGCTTTATTCGTGAAAAGTATATTGA
TTAGCCGAATCAGGTCTGGTTATAGGGGTCGCTGGCTACGAATTGTGGTC
TGGGCCACAAACTGAACAGCTCTTGGGTGGGGTCTCGACCACGAACTGAT
TAGCGAGGTGGCGAGTCcttggctacgagctgaacagCGAGTATACGAAT
CTTTGGCCGTGAGTTGAACAGTGGAGTAAAATAGTCTCCACTGTTCAACA
CGCGGCCAAATATTCGTATACTAAAGCTCTGTTCTGCATTTTTCTTCAAT
TAAATGTTTAGCCACGAAATGAACAGTGAAGATTACTgtttaaagtctgt
tcacgataagtgtgcactcttttctcctttacctataacttttgaaggca
ttcttcaatctttataaatttggtatcatttgaaagattttagtagatct
ggagagattctttgatcttaggaggtcatcactgtgaaaaaatttcacta
aaatatttattcaatataaagttatgatacaaagttaataagtgattNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcaaaaaaca
gcagaaaacagcagaaaacagcgtttttagacgtcaatcagcttataact
ttatttgatatcttttgactgaatgagaatttttgagaatctttttcaca
gtgatgacgttcgatgattaaggattcacttgtgtgaaaatgatagttat
agcactcttatacaagatcttcatttttttcttcttcattttcatcttca
tttttagaattttttttaatatttttttatttcaaattgttacaCTCACT
agtatctttccaatgataccaaatttataaagattaaagagttccttcaa
aagttataggtaaaagaaaaaagagtgcacacttatcgtgaatagacttt
agtttcgTAGTCAACGATCCCTCTAGCGAGACCTGATCTGATTAACCTTA
CTTTTTAAGTCATTTTCACCTGTACAAGTTTTTAATACCTTTAGATTAGG
ATTGAATGCTCTTACTCCATAGCCCTGATCAGAATAAAATTCATGTCTAG
TTAATATTTCAAGCTTATTTTTaagggttttgttttgttggacctacccc
ggagGTCCTTTAGATTAACTGgatgttcgttcgtttgttcgttcgctttt
tggactttgtgtgaaattgcttcatcattagttttttctaattttaNCGT
TCGTTCGCTTTTTGGACTTgcgtgtgaaattgcttcatcattagtttttt
ctgattttatgcataaagatggagggcaaggttctctaaaaagtgggtGA
AGGAGATATTTATTTGAGCTATGATACTTCAagctgctcactacactttc
ttactctcttgctatttgtcctatttttatctgattctcatcatcagata
ggtccattcagcacgttgcttgtttgtattttttgatattCAAATGAGTG
ATGACTCTTACATGTAataatttcttcattttactttcatttttaaaggt
aaaatcaaattgaaatatcaatattaaaatatacaaaaacaatgTAATGA
GGAAATGGATATGATAAAAGAGATGGTTACTGGCTACTGCGGGTGATTCT
CAAATTGAATTGATAATTGAGGGTATGttggttttgttttcatttttagc
aGTAAATTAAAGATAaacgttttttggacctacctccgggtagcCCGGTG
GTTCTccagattggctcattagttttttctgattttttgcacaaagatgc
aaaattgcaatggccaaaatgtgacggagcccgaaaaatttttttttcgg
ataaACTGGTtgtttggcattttctcgagattttatcattagttatttca
gaatttttgctCAAAggtgcgtattaacaatgcacaaaacatggctgagt
ctgatttttgagaaaatttttcttccggccgaaaatgccggaaatatgcc
ggcaAACGCCGTTTTTCCAGTTTTTtattagactttttcctaatAATTGG
TTGtttattcattcaaaaacattattgatagcaccatcaagcatgtttcc
attttcaataaaattgatttttgaagtcggaactatttaaaaatcgccgg
aacaaccaattttcgccggaaagacagtatttcttgaatttctcaagctg
tactttatatttttttatgaaatttggcacactgatgcaaaatgacaata
acttaaatgtgacggagcccgattttcaaaaaaaaatatgccggaaaacc
ggttttttgacattttctcgaattttcatccttagttttttctgtttttt
gcagaaagatgcgtattcgcaatgctcaaaacatggccgagttcgatttt
tgagaacgaattttttccggttgaaaatgccggaaatcgccgtttttgca
gattttcattggattgttccttatatttctatgcttttcacacaaacatt
attgataacaatgctcaccttcacgcatgattcaattgtcaataaaactg
atttttgggaccagaactttctatttattttttccctacaaccctttcct
ctccccccatcaacaatcaatgatgaacttattgcgttatgcattttcgc
taaacgctatattttctgtctgactgatttttttcatttttcttctcgca
ttgctatctaactttcatcatcaggtaggtccattcaacatctagcttgt
ttatataagaatgttgtttttcttaaccacttcatcatggatattcttaa
ctttttgggaaaaatcattctaaaatattcttacagtgtTCTTAGGTTTG
GATGCAAACCCAGCCTAAATCTAGTAAGCAATATATACCTCAAGCaggaa
tttggcatttttgtgaaacttTTTAGCATTGTTTGCTGAggaataattgg
caatttaatgGTAGAAAAGATTCAAAATGACATTCCTAACTTCACTTGcc
taattccatgatggtggtattcttagcatattcttattcTTTCGGCCAAA
TTTATCATGAATATTctcataaaagaaaaagcgtgtaattgaTTTGCTGA
GAGGCTTGACATACACTGTCCTATATAAAAAATTTCTACTAGCATTTAAG
GAAAAACAAAGGAAAGACAATAGTAGGCCGAGTATTGATAAAGATACAGG
ATCCTGgcgcagaattctattggctgttgcAAAATTAtgtcaatgcagtc
aaaacatgtgattactcgaaaaagttcacgtgattttattcccatgttgg
TTGCTttaagcttggtactcacttgtgcaaaaaatcgcgtCTAAGTGCGC
TTAAGTGTGTCGAACACATTTATGCTTTCTAGTGAGTACATTCGCTAAAC
GCACTTAAGTGCACTTAGACGCACATCTACGCACATAAACGCATTGATTT
TGCTAGGCGCATTTAAACGCgaatataaaaaagttttgatatttCGACAC
GATCATCAAAGACACCGCGTGTAAACACTATTCAGTTCTTTTGGAATTTG
AAGAGAGAGGAGGATTTTTTCATCACGTTTAAGTGCGCCTAACTCCTTTT
TCCCTCTCTTTCATTCAAATCACTTTGTAGTGAGTACATAAATAGCGTGC
GTTTAAGTGCGCCTAACTGATAGGCGcaattttttgcacaagtgagtacc
aagctttacaacttacagctgataactttattagtgtcaataaattcgaa
ccaatcagaaataaatgtcacgtaacaagcacataaaaatttcgtaaAAG
CGTGATTTATTTTCagactttattaatttttcaacCTGTGTcattgttga
aatcacgtgatattattgttttggttGGCTACCTCATCAACGGCTTTATT
TGACAAAAAGTTCTAACCaattgtaaacaaattcaaactggatcataaat
accatactctcgCTGAGTAGCTTCTGTTACGaggttttttgcttatgtgG
TCTAAGTTTTGGTTGAGAGAGTATGGATCATCAGATTAGTAATTGATAAT
TTCAATACATCCATGTTTTACAGTTTTGTGGTTTTGTTTTGTGACTTTGC
ATTGAATGGATGCTTAAGAAATTGATATTTATCATGATGCAAATCACAGT
TGGAAGTCAGAATTCCATATAGATCAGTTTTGTTGACAAAGACAATATCT
TAAAAGAAACtaaattcacattttttttaGTTAGATTAATGCATTATAGC
AAGATTTGGCCTtgtttgaagaattttcaaattttggcagCAAAAATTGC
TGACGTGTGTATGCGCGCTAGTCCTTGCTACCATTtctagaaagtttttt
ttccatAGGGGTTTCCACCATTGAGATAAAAAAATGGAAGTCTTTAACAT
TTCTGTAATTAGACAATTGCATTATAGCAAGCATTGACCTTgtttcaaaa
atctcaaattttggTGGCAAAAGTTTCTGTGGTAATATATGTATTTCATT
TGACTGGTTCACTATTGAAAGACTGGAAAAGGGAGCGGCTCTANATATGT
ATTTCATTGGACTGGTTCACTATTGAAAGACTGGAAAAGGGAGCGGCTCT
AACGTTTGGGCTACTAACATTCGAACATAGAGGCAAACTGAAAATCAGAA
TAGTGAGTAATCTCGTAACTTCAAATGATAATTTACCTCACACCTATTAT
GTAACATTGGGATTCACACCTTGTAAGGAAATTACATTTACATTACATTT
GATAATTAGGAGTAATCAGAAAGTTTTAGTACAAATAGTAGAAAAAATAT
TCTTGATTATCAAACTTTGTAAGTTTTACCTGTtccaaaacaaatatggc
aaaTAATNCAAATAGTAGAAAAAATATCCTTGATTATCAAACTTTGTAAG
TTTTACCTGTtccaaaacaaatatggcaaaTAATggagaaaatgttgaaa
aagagcttggttttgataaaattgacaTAAATTCCAAACGAAAAGAATAT
TTAAGTTGGGAAGATTATTTTATGGCAACAGCTTTTCTAGCAGCTCAAAG
AAGTAAGGATTCTTCATCACAAGTGGGTGCTTGCATTGTAAATGACGAAA
AGAGAATTGTTGGGGTAGGCTACAATGGGATGCCAAGTGGATGTGATGAT
GAAGAACTGCCATGGTCAAGAGTTGGTGAAACATATTTGGATACAAAATA
TGCTTATGGTAAGAAAACTTCTTTCTCAGTAACTTGGGTGGTGCCGACTC
AGTGTACTGACCCATAGCTGGTGGGtggttttttttctcaaaataaattt
gaattagtATAGTGTACTAAGGGTGGTATCAAAACTCTGGTCATGGACAA
AAACTAGCACAGTGTGCTAAAAATAAAGGGTGGTGTTCTGAAttgatgaa
caaaaaaattctgTACATCGTACAAAGTTATGAAATTTTGGAATAAATGA
TGAAGATATATGTcgcttttttgggacacactgcgGCATAGTATAAAGAG
CTTACTGTAGAGCTTTTCTATTCTAAATTTGGGCAGAGAGTTTATAAGAT
AAGTGAGAGGAACTCCAAGatcttttaaatttcattaaatgaCTAATTTG
ACAAAGAATTTGGTCCAAGGAGGGGTAGGGTCACTCAAGTAAAACGGGAC
TTTCTTATGTATACCTTCTGTAATGGCCTTTTGATTGATAGCAAGATAAT
AACATACTAAAAATGCGAATTTGATTATCTATTACAGTGTGCCATGCTGA
GATGAATGCAATCATGAACAAAAATTCTGCTTCTGTCAAGAATTGTACCA
TATATGTAGCTCTTTTTCCTTGCAATGAATGTGCAAAGCTCATTGTCCAA
TCTGGAATCAAGGAAGTTGTTTATTACTCAGCAAAAAATGGTGAATCTAT
GGAAGCTAAAGCATCCCGAAAAATGTTTGAATTGGCTGGGATTAAGTACA
GGTATGTGAAGTGTGTgatgcatagccctcttttggcgtcaatgcaatgt
cttctttcaaaccttttcaagcaaagattttaacaaccaactttgtgccc
tctttctgcctactctaacaattagaataggcagggcagaaagtcggccg
tctaaactNTGTAGTGTTGCTTagcatcttttttattttcagcgtCTTGG
CGAAGGTAAACATTTAGGAATTTTATGTGCTGAGGTTATTTTAATTTTGC
AGATGCTATGAATACTGTACCATTTCTATTCTTAAGACTTATTTTTGGTC
AATTCTTTtggaattcaaaattgaaattatcatTCAAAGGTTTTAATTTG
AGCCTCAATTTTAGGACAATTACATATTATTATCAattcttttgagaaaa
attgagAAGTTTTAAACTCTAAATATCTTCTCCACAATTCACAGGCAGCA
TATtcctaaagaagaaaaattagtGATCGATTTTTCTGtcatcaataaaa
acaaatctcAACCAACTGGCATGAAG Coding sequence (CDS) from alignment at sc0000107:528453..545228+ >TCONS_00010532 ID=TCONS_00010532|Name=TCONS_00010532|organism=Clytia hemisphaerica|type=CDS|length=2340bp|location=Sequence derived from alignment at sc0000107:528453..545228+ (Clytia hemisphaerica)
ATGGCACAGATTAATGGAGAGAGAGTTGAAAAAGAGCTTGATTTCGATAA
AATTGACATAAATTCCAAACGCAAAGAATATTTAAGTTGGGAAGACTATT
TTATGGCAACAGCTTTTCTAGCAGCTCAAAGAAGTAAGGATCCTTCATCA
CAAGTGGGTGCTTGCATTGTAAATGACGAAAAGAGAATTGTTGGAGTAGG
CTACAATGGGATGCCAACTGGGTGTGATGATGAAGAACTGTCATGGTCAA
GAGTTGGAGAAACATATTTGGATACAAAATATGCTTATGTGTGCCATGCT
GAGATGAATGCAATCATGAACAAAAATTCTGCTTCTGTCAAGAATTGTAC
CATATATGTAGCTCTTTTTCCTTGCAATGAATGTGCAAAGCTCATTGTCC
AATCTGGAATCAAGGAAGTTGTTTATTACTCAGCAAAAAATGGTGAATCT
ATGGAAGCTAAAGCATCCCGAAAAATGTTTGAATTGGCTGGGATTAAGTA
CAGGCAGCATATtcctaaagaagaaaaattagtGATCGATTTTTCTGtca
tcaataaaaacaaatctcAACCAACTGGCATGAAGATGGCACAGATTAAT
GGAGAGAGAGTTGAAAAAGAGCTTGATTTCGATAAAATTGACATAAATTC
CAAACGCAAAGAATATTTAAGTTGGGAAGACTATTTTATGGCAACAGCTT
TTCTAGCAGCTCAAAGAAGTAAGGATCCTTCATCACAAGTGGGTGCTTGC
ATTGTAAATGACGAAAAGAGAATTGTTGGAGTAGGCTACAATGGGATGCC
AACTGGGTGTGATGATGAAGAACTGTCATGGTCAAGAGTTGGAGAAACAT
ATTTGGATACAAAATATGCTTATGTGTGCCATGCTGAGATGAATGCAATC
ATGAACAAAAATTCTGCTTCTGTCAAGAATTGTACCATATATGTAGCTCT
TTTTCCTTGCAATGAATGTGCAAAGCTCATTGTCCAATCTGGAATCAAGG
AAGTTGTTTATTACTCAGCAAAAAATGGTGAATCTATGGAAGCTAAAGCA
TCCCGAAAAATGTTTGAATTGGCTGGGATTAAGTACAGGCAGCATATtcc
taaagaagaaaaattagtGATCGATTTTTCTGtcatcaataaaaacaaat
ctcAACCAACTGGCATGAAGATGGCACAGATTAATGGAGAGAGAGTTGAA
AAAGAGCTTGATTTCGATAAAATTGACATAAATTCCAAACGCAAAGAATA
TTTAAGTTGGGAAGACTATTTTATGGCAACAGCTTTTCTAGCAGCTCAAA
GAAGTAAGGATCCTTCATCACAAGTGGGTGCTTGCATTGTAAATGACGAA
AAGAGAATTGTTGGAGTAGGCTACAATGGGATGCCAACTGGGTGTGATGA
TGAAGAACTGTCATGGTCAAGAGTTGGAGAAACATATTTGGATACAAAAT
ATGCTTATGTGTGCCATGCTGAGATGAATGCAATCATGAACAAAAATTCT
GCTTCTGTCAAGAATTGTACCATATATGTAGCTCTTTTTCCTTGCAATGA
ATGTGCAAAGCTCATTGTCCAATCTGGAATCAAGGAAGTTGTTTATTACT
CAGCAAAAAATGGTGAATCTATGGAAGCTAAAGCATCCCGAAAAATGTTT
GAATTGGCTGGGATTAAGTACAGGCAGCATATtcctaaagaagaaaaatt
agtGATCGATTTTTCTGtcatcaataaaaacaaatctcAACCAACTGGCA
TGAAGATGGCACAGATTAATGGAGAGAGAGTTGAAAAAGAGCTTGATTTC
GATAAAATTGACATAAATTCCAAACGCAAAGAATATTTAAGTTGGGAAGA
CTATTTTATGGCAACAGCTTTTCTAGCAGCTCAAAGAAGTAAGGATCCTT
CATCACAAGTGGGTGCTTGCATTGTAAATGACGAAAAGAGAATTGTTGGA
GTAGGCTACAATGGGATGCCAACTGGGTGTGATGATGAAGAACTGTCATG
GTCAAGAGTTGGAGAAACATATTTGGATACAAAATATGCTTATGTGTGCC
ATGCTGAGATGAATGCAATCATGAACAAAAATTCTGCTTCTGTCAAGAAT
TGTACCATATATGTAGCTCTTTTTCCTTGCAATGAATGTGCAAAGCTCAT
TGTCCAATCTGGAATCAAGGAAGTTGTTTATTACTCAGCAAAAAATGGTG
AATCTATGGAAGCTAAAGCATCCCGAAAAATGTTTGAATTGGCTGGGATT
AAGTACAGGCAGCATATtcctaaagaagaaaaattagtGATCGATTTTTC
TGtcatcaataaaaacaaatctcAACCAACTGGCATGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010532-exon-sc0000107-1491911889:528453..528792 | TCONS_00010532-exon-sc0000107-1491911889:528453..528792 | Clytia hemisphaerica | exon |
| TCONS_00010532-exon-sc0000107-1510915933:528453..528792 | TCONS_00010532-exon-sc0000107-1510915933:528453..528792 | Clytia hemisphaerica | exon |
| TCONS_00010532-exon-sc0000107-1575043694:528453..528792 | TCONS_00010532-exon-sc0000107-1575043694:528453..528792 | Clytia hemisphaerica | exon |
| TCONS_00010532-exon-sc0000107-1491911889:543935..543960 | TCONS_00010532-exon-sc0000107-1491911889:543935..543960 | Clytia hemisphaerica | exon |
| TCONS_00010532-exon-sc0000107-1510915933:543935..543960 | TCONS_00010532-exon-sc0000107-1510915933:543935..543960 | Clytia hemisphaerica | exon |
| TCONS_00010532-exon-sc0000107-1575043694:543935..543960 | TCONS_00010532-exon-sc0000107-1575043694:543935..543960 | Clytia hemisphaerica | exon |
| TCONS_00010532-exon-sc0000107-1491911889:544490..544703 | TCONS_00010532-exon-sc0000107-1491911889:544490..544703 | Clytia hemisphaerica | exon |
| TCONS_00010532-exon-sc0000107-1510915933:544490..544703 | TCONS_00010532-exon-sc0000107-1510915933:544490..544703 | Clytia hemisphaerica | exon |
| TCONS_00010532-exon-sc0000107-1575043694:544490..544703 | TCONS_00010532-exon-sc0000107-1575043694:544490..544703 | Clytia hemisphaerica | exon |
| TCONS_00010532-exon-sc0000107-1491911889:545147..545228 | TCONS_00010532-exon-sc0000107-1491911889:545147..545228 | Clytia hemisphaerica | exon |
| TCONS_00010532-exon-sc0000107-1510915933:545147..545228 | TCONS_00010532-exon-sc0000107-1510915933:545147..545228 | Clytia hemisphaerica | exon |
| TCONS_00010532-exon-sc0000107-1575043694:545147..545228 | TCONS_00010532-exon-sc0000107-1575043694:545147..545228 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000107 | supercontig | sc0000107:528453..545228 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006220 | pyrimidine nucleotide metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004132 | dCMP deaminase activity |
| GO:0008270 | zinc ion binding |
| GO:0016787 | hydrolase activity |
| GO:0003824 | catalytic activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006220 |
pyrimidine nucleotide metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0004132 |
dCMP deaminase activity |
| molecular_function |
GO:0016787 |
hydrolase activity |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
BLAST of TCONS_00010532 vs. Swiss-Prot (Human)
Match: DCTD (Deoxycytidylate deaminase OS=Homo sapiens GN=DCTD PE=1 SV=2) HSP 1 Score: 243.047 bits (619), Expect = 8.265e-81 Identity = 110/168 (65.48%), Postives = 132/168 (78.57%), Query Frame = 3
Query: 144 KRKEYLSWEDYFMATAFLAAQRSKDPSSQVGACIVNDEKRIVGVGYNGMPTGCDDEELSWSRVGETYLDTKYAYVCHAEMNAIMNKNSASVKNCTIYVALFPCNECAKLIVQSGIKEVVYYSAKNGESMEAKASRKMFELAGIKYRQHIPKEEKLVIDFSVINKNKSQ 647
KR +YL W +YFMA AFL+AQRSKDP+SQVGACIVN E +IVG+GYNGMP GC D+ L W R E LDTKY YVCHAE+NAIMNKNS VK C++YVALFPCNECAKLI+Q+GIKEV++ S K +S EA A+R +F +AG+ +R+ IPK K+VIDF IN SQ
Sbjct: 8 KRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSDEATAARLLFNMAGVTFRKFIPKCSKIVIDFDSINSRPSQ 175
The following BLAST results are available for this feature:
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