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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010522 ID=TCONS_00010522|Name=TCONS_00010522|organism=Clytia hemisphaerica|type=transcript|length=5289bpRun BLAST on NCBI protein sequence of TCONS_00010522-protein >TCONS_00010522-protein ID=TCONS_00010522-protein|Name=TCONS_00010522-protein|organism=Clytia hemisphaerica|type=polypeptide|length=928bp MLRIVASLHDICQYLCAHARSGSSHARMGSHKLETSSITADWGGTEGIGARun BLAST on NCBI transcript from alignment at sc0000107:289866..374006+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010522 ID=TCONS_00010522|Name=TCONS_00010522|organism=Clytia hemisphaerica|type=transcript|length=84141bp|location=Sequence derived from alignment at sc0000107:289866..374006+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000107:289866..374006+ >TCONS_00010522 ID=TCONS_00010522|Name=TCONS_00010522|organism=Clytia hemisphaerica|type=CDS|length=30657bp|location=Sequence derived from alignment at sc0000107:289866..374006+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00010522 vs. Swiss-Prot (Human)
Match: CC162 (Coiled-coil domain-containing protein 162 OS=Homo sapiens GN=CCDC162P PE=2 SV=3) HSP 1 Score: 347.436 bits (890), Expect = 1.792e-100 Identity = 245/864 (28.36%), Postives = 456/864 (52.78%), Query Frame = 1
Query: 277 LFENLNDKDAGDCLVVMLRIVASLHDICQYLCAHARSGSSHARMGSHKLETSSITADWGGTEGIGAELREIQKQIDKLENPFDPDDVATFLKRKRDIIFMEYDVTISHSVRNTFLQSGNQTAYQSITNCMKSALQDLSNRSREIYANNRLSVPDPLEPSDSIAKTLFPWRSFL---GRYVSNPMSFFDLSYVMQIPLFELKNIDKHLVHGEILGVSLLLEDVVSTGIPKVSFTEPQGSSNTDLMXXXXXXXXXXXXXXXXXXXXXXXXXXTIESPKKSFLTTSFNMEKFAGHAGLSWQHYPMQTSEVVYNFLLLWSRLEIVRREWGCRRLKITSLSTVKSYDQFQHLYNLEILQPVYHRILTSREGSSNKQNRTRLRVAGDEEISLVELPDDVTEYEIKGRQLVRLLEHFECMMIDDCIRRISRQHTAVVSERHRDDHNMPTDLWKRPSMKENVTIPRAHLVEDFARELLADSSSNDNL-VTLERDSLDHSLVTLATAITNREKMNFLSCSMFYENLLRQQNNALYTKERHIKRLEDTIEQLESKTSVEIDCALAERSYELLIEITALRSKIADLEKWNNESEMKLDERYRQSYNDMVLDLFQNAFGMKMRFENFRLKLHDDVMDFVQEVRKISVDKLQKVRNKHGYQPSNDNMSARLIQAEKIREVQRENKKLTDIVSKQRTMHTWFRSKSRSKFELMSADFQSNTDKATKENLEKEMLQEQKSSLMKEEQEALKKILINLDQECSKLRQQLDKEHKIQAQRSHLQLKEEQSSRHLEMARASNXXXXXXXXXXXXXXXXQMRDSQSPDNKQSARSSSETKRLLRQAITQVSHERSLKLDAFERVDELQKHVSELENRITDMLS 2856
+F+ L +K A L L+++A LHDI YL + A+ G+ A + + + DWGGTEGIG+EL+E+Q ID L++P DP VA L +R++IF+++D + H +R TFL +GN AYQS+T+ M L LSN R+ ++LS+P PL+P A LFPWR+FL G + S L Y MQ+ L L + D+ + HGE++GV LLLEDV+S+ V+ PQ T +++ + + F ++ E G + + ++ +FL+LW +LE+++ WG +L+ +++V + +F LY ++L P I +R+ K++ + ++ V P +E EIK QL +LLE+ E MI + +R+++R+ T V+SE+ +++ ++PTDLWK MKEN ++ R +VE F + L+ + +D + +T +D L+ L++L + RE NF + SM YE++L L KE+ + + E +AE S+++++EIT LR+++ DLE+ N + ++ + ++ Y +V LF+ +K + ++ +L L V + + EVR +D ++ ++ K ++ M + E++ ++++N L ++V K R++ W + ++ F+ + + + ++ KE L +++ E++ L +++ AL++ L + +++ +Q D + ++ + H +E + + L + S ++KLL+++ ++E++L+ + +K + KR L Q ++++ ERS+KLDA +R +ELQ + + + M S
Sbjct: 1 MFKTLPEKAAFKALKRTLQLIAPLHDIVAYLVSFAKLGNCPACFEFPR-SPNPLRGDWGGTEGIGSELQELQNMIDSLQSPQDPIRVAQALLLRREVIFLQFDAAVRHLIRRTFLAAGNVPAYQSVTDGMCHGLPALSNSLRKSIFASQLSLPQPLDPRSLQAFELFPWRAFLEDGGPFPVMSNSPDTLEYNMQLCLCGLSDRDRKVAHGELVGVQLLLEDVLSSY--HVTMEAPQRQQAT-------------------LGKNTQPDWSKVPGFRSQFRSSPKTSELLEGLCD------AVMSFALLRSFLILWKQLEVLKEHWGRLKLQGQDINSVSLHKRFSELYETDVLYPSMKAI--ARQ--MGKEDEFEGFIVNNQS---VLPPSGASEVEIKTHQLQKLLENCEIQMIQEVLRKVNREMTLVLSEKCKEECSLPTDLWKHQVMKENFSVSRPQIVEKFIQRLM--NYQDDGVEITFRKDHLEACLLSLGCDVMARECSNFETYSMCYEHVLHHARQRLSQKEQELDATQRGQGPPEDSAG-----QIAELSHDMIMEITTLRAQLTDLEEVNLNLKKQIRKEVQEEYEALVRALFETCLHIKEKLDDNQLNLIQKVCELIGEVRTEGIDNMKDLKKKWCSASPDEGMKENPAK-EQLWALEQDNCSLANLVCKVRSLGRWRLAVQQACFQAQLSRTEKESIQSKKEYLRIKLMAEREVGLFRQQVLALRQALARAQADSARMWKQQDSQAQLLKELEHRVTQEALTQQQLHFMKTSRMEKLLEDVGQKEQQLQLLSKEAERASKLGQLQQKKMKRDLHQMRSRLAQERSVKLDALQRAEELQGQLHDAQRSAVPMGS 821 The following BLAST results are available for this feature:
BLAST of TCONS_00010522 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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