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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010521 ID=TCONS_00010521|Name=TCONS_00010521|organism=Clytia hemisphaerica|type=transcript|length=3023bpRun BLAST on NCBI protein sequence of TCONS_00010521-protein >TCONS_00010521-protein ID=TCONS_00010521-protein|Name=TCONS_00010521-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1007bp DILLECQDAYDRASRLSVCCEPLITSQPIPISMIKSEDLAIYTRWFVYYLRun BLAST on NCBI transcript from alignment at sc0000107:278480..289121+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010521 ID=TCONS_00010521|Name=TCONS_00010521|organism=Clytia hemisphaerica|type=transcript|length=10642bp|location=Sequence derived from alignment at sc0000107:278480..289121+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000107:278480..289121+ >TCONS_00010521 ID=TCONS_00010521|Name=TCONS_00010521|organism=Clytia hemisphaerica|type=CDS|length=36252bp|location=Sequence derived from alignment at sc0000107:278480..289121+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00010521 vs. Swiss-Prot (Human)
Match: CF183 (Putative uncharacterized protein C6orf183 OS=Homo sapiens GN=C6orf183 PE=5 SV=3) HSP 1 Score: 107.071 bits (266), Expect = 2.298e-24 Identity = 76/269 (28.25%), Postives = 136/269 (50.56%), Query Frame = 2
Query: 5 ILLECQDAYDRASRLSVCCEPLITSQPIPISMIKSEDLAIYTRWFVYYLHSIKKITHFIKVIEWLPQTKFLLSKKHDKLEEKKTVSNSNKKFTSRD---ESNGLVSPRFLSPRSFWKRDEKPTPVSETSKDIKP--LPSFSTEIEDFSKQLDVLLANYDIKMRCHQVENQSDGMDMYNLVIRKFKQHHFIQEQNRLFPIYDSETLENSKETKEKGHMTYKKESNWLAFIQILPDVYNTQKAALTKLKEQDAMDQLMFVQSKILSVKSSD 796
I+ E D RA RLSV E + + P +++ EDL IYT+W V +LHS+ + +++ +++LP +K +LS +++ E N+ D + G SP D T +S + LP +TE + QL +LL+++ I ++ + + M++++LV +KF+ Q++ ++FP ++ + MT KK++NW++FI+I P QK LTKLKE+ D L+ +Q+K L + + +
Sbjct: 151 IMQEYNDTLQRAERLSVARENFLMGKNNPPNLVTQEDLTIYTKWLVCHLHSLGTVHQYLQALQYLPISK-VLSVAFNRVAE---AGQKNENVCVNDIDPDIQGSASP-----------DPVDTSISGPMRTEAAFVLPQHATETGELKPQLKLLLSHFSIPYDVEELWDSAKEMELFSLVSQKFQSVFMEQQRLQMFPDCEAGIAKADNLGLAGPRMTLKKKANWISFIKIKPKCDPWQKKLLTKLKERRRTDALLQLQAKFLKISNPE 404 The following BLAST results are available for this feature:
BLAST of TCONS_00010521 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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