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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010511 ID=TCONS_00010511|Name=TCONS_00010511|organism=Clytia hemisphaerica|type=transcript|length=2294bp
CTGGGGAGCATTTTACTTTTAGTCAGGGGGGTGTTAGACAGAGAATTTCA
AAGCGAgtaaaaaatgtgtcaaaagtttttcttttctcaaATTATACAAC
ATGATtcgtaaaaacgtaaaaaaaatcTATTGAAGAATTCGACGAAAGTA
TAGGGAGAGCTCTGATCGATCTATAATGATCTATATTTATAATGAAATCT
TAATAAGGAAGAACGGGTCAGGACAGTCTACGATGTTGTTCAAATTATGC
GACCATCGGTTTTTGAATAGATAATTTATGGGATCCTAAGCCTATATTAA
AACAAGAAAATGCGATTAAAGGAAAACAAACGTTTTTTCTTCTTGAATTT
AATTTCCTTAAGTCAAAAGAGCATTTTCCGACAAGATTTCGTTAATTTCA
ACTTCGAAGAAAAAGATATGAAGAATCGGGATAATGTTTGGTTTGAAATC
GTCTAAAGAGCCGACAGTCTGTTATACAGGCTGTGGTGAAAATCTCTGCT
CTTACACATGCGCTTTAATGAATCTTGGAAATCTCAGAAGCCAGAGTCAA
GTTCGGCACACACATTCcacactaaatagaccttttcataaattacgtca
caaacatcactagcctcgtattcaaacaattaccatggttatTATGTCTC
tagagactgattttttttatgaataggaagttgttttaataaaatccgct
gggatttaatcaataatttcaaaacgaagcaagtgatgttcgtaaagtaa
tttatgaaaaggtctagtATCCAAAATAATATCATCTAAAGAACCGATGA
TCGGCTTATTTGAACATATTCTTGACAGATAGACTTCCAGATCATATTTT
TTCATACGAACTATGATAAAGGTAGGAATGCCTTCATTTGGACTTcgatt
caaaaacatttcaaacaaaaacccTACTTACGCCACTCATGCGTCCATCT
AAAATTATGTACAAAGCAGATAATCGAAACATTTCGattcaacacctAAA
TTCTTACATCcttactttctttaaaaatcgcATATAGGATGCAATAAAAC
CGTCAGGGTCCTCCACTTGAGGATAATGTCCGACATTATCTAAAACGGTG
ACCGAAGAATTCGGTATCAACTCTTTGTATGTTTTCAGAAAACCATCAGG
TGTATTAACTGGGTCTTCAGGCCCGTACACTAAATGCACTGGGACTTTGG
TTTCTTGTAAAGCACTTAACCATCTCATCTCGTTTGCTTTTCGCTCAAAG
AGATATGTGAAAATATCAGGTATAGCAATATGTCCGTTTTTGTGTAGCAT
AATGGCCCAAATATCTTCGAGTTGGGTGTCGGACGGACGTGTGTGTGGTC
CAAATATACTTGACAAGCGGTTCTTGTAGATAGGGTATGTTAACAGGTAA
GGCATAATCTTTTTGAAGGTTGGCGAGGAGAAAAGTTTCTGTATGAAAAG
AATGTTATGACGAGATGGTACTAAACCACCGTTCAAAAAACAAATACTTT
TGACCATGATTTCTGGTGAACCCTGGTTCACTTGGTGTATCAATTCTTGA
CCTATACTGACTCCATAATCATGTGCAACAACATGGATATCGGTCAAATT
CAACTGTGTCAACAATTGCACCAGCATCCGTGATTGTTCCATCATTGTGT
ACCGATATCCGATCGGTTTATCACTGAAACCCAATCCCATTAAATCGGGG
ATAACAACTCGAGAGAATTTAGTTTTGAACTCAGGAACTAAGTCACGCCA
GATGAATGAATTAGCTGGGAATCCATGAATAACCAATAAAATAGGACCAT
CCTTATTTTCAGTATTAACTCCACTATCATAATAAAAGATATCAAAAGTA
TCATTATATTTGAAGATTTGTCCCTTGTTAAACCAATCTCTCACTTGTGG
CGATAAATTCGGTAAAGGTTTATTTAGATAGTATAACACCAAACATAtca
aaataattacaaaatggACCAATGTTGATTTGCTCTTGAACATGGTTAAA
TACTTTGATTCTCCAAAGTTGGCCAAAGCTTTAATCTTGTTTTAAAATTG
ACTGAATCCTGTTTTCAATTTATACGAAGTTTAGATGTGTACCTTCAAAA
GTCTGTAGTATGTTCTCCACACAATTTATAATAACCAAACCGAGTCAATC
ATCAAAACACGTTCGATTGGCTGTTGACCTTTCAATCCTTTTTTCTGCTG
TCTTACATCATAGAAAGCAAGGTCAAACAAGAAACGGTATAGTTATTAAT
TTAATCTAATAAAAGAAAGATAACAAAAACATCATTCAAACCTT Run BLAST on NCBI transcript from alignment at sc0000107:138740..141120+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010511 ID=TCONS_00010511|Name=TCONS_00010511|organism=Clytia hemisphaerica|type=transcript|length=2381bp|location=Sequence derived from alignment at sc0000107:138740..141120+ (Clytia hemisphaerica)
CTGGGGAGCATTTTACTTTTAGTCAGGGGGGTGTTAGACAGAGAATTTCA
AAGCGAgtaaaaaatgtgtcaaaagtttttcttttctcaaATTATACAAC
ATGATtcgtaaaaacgtaaaaaaaatcTATTGAAGAATTCGACGAAAGTA
TAGGGAGAGCTCTGATCGATCTATAATGATCTATATTTATAATGAAATCT
TAATAAGGAAGAACGGGTCAGGACAGTCTACGATGTTGTTCAAATTATGC
GACCATCGGTTTTTGAATAGATAATTTATGGGATCCTAAGCCTATATTAA
AACAAGAAAATGCGATTAAAGGAAAACAAACGTTTTTTCTTCTTGAATTT
AATTTCCTTAAGTCAAAAGAGCATTTTCCGACAAGATTTCGTTAATTTCA
ACTTCGAAGAAAAAGATATGAAGAATCGGGATAATGTTTGGTTTGAAATC
GTCTAAAGAGCCGACAGTCTGTTATACAGGCTGTGGTGAAAATCTCTGCT
CTTACACATGCGCTTTAATGAATCTTGGAAATCTCAGAAGCCAGAGTCAA
GTTCGGCACACACATTCcacactaaatagaccttttcataaattacgtca
caaacatcactagcctcgtattcaaacaattaccatggttatTATGTCTC
tagagactgattttttttatgaataggaagttgttttaataaaatccgct
gggatttaatcaataatttcaaaacgaagcaagtgatgttcgtaaagtaa
tttatgaaaaggtctagtATCCAAAATAATATCATCTAAAGAACCGATGA
TCGGCTTATTTGAACATATTCTTGACAGATAGACTTCCAGATCATATTTT
TTCATACGAACTATGATAAAGGTAGGAATGCCTTCATTTGGACTTcgatt
caaaaacatttcaaacaaaaacccTACTTACGCCACTCATGCGTCCATCT
AAAATTATGTACAAAGCAGATAATCGAAACATTTCGattcattttacaaa
aaaaagattGATTATCTGCCCATTAGCATCGGCTTAAAACTGTCTGGTgc
taaaataatataaaatataaaaaaaacaacacctAAATTCTTACATCctt
actttctttaaaaatcgcATATAGGATGCAATAAAACCGTCAGGGTCCTC
CACTTGAGGATAATGTCCGACATTATCTAAAACGGTGACCGAAGAATTCG
GTATCAACTCTTTGTATGTTTTCAGAAAACCATCAGGTGTATTAACTGGG
TCTTCAGGCCCGTACACTAAATGCACTGGGACTTTGGTTTCTTGTAAAGC
ACTTAACCATCTCATCTCGTTTGCTTTTCGCTCAAAGAGATATGTGAAAA
TATCAGGTATAGCAATATGTCCGTTTTTGTGTAGCATAATGGCCCAAATA
TCTTCGAGTTGGGTGTCGGACGGACGTGTGTGTGGTCCAAATATACTTGA
CAAGCGGTTCTTGTAGATAGGGTATGTTAACAGGTAAGGCATAATCTTTT
TGAAGGTTGGCGAGGAGAAAAGTTTCTGTATGAAAAGAATGTTATGACGA
GATGGTACTAAACCACCGTTCAAAAAACAAATACTTTTGACCATGATTTC
TGGTGAACCCTGGTTCACTTGGTGTATCAATTCTTGACCTATACTGACTC
CATAATCATGTGCAACAACATGGATATCGGTCAAATTCAACTGTGTCAAC
AATTGCACCAGCATCCGTGATTGTTCCATCATTGTGTACCGATATCCGAT
CGGTTTATCACTGAAACCCAATCCCATTAAATCGGGGATAACAACTCGAG
AGAATTTAGTTTTGAACTCAGGAACTAAGTCACGCCAGATGAATGAATTA
GCTGGGAATCCATGAATAACCAATAAAATAGGACCATCCTTATTTTCAGT
ATTAACTCCACTATCATAATAAAAGATATCAAAAGTATCATTATATTTGA
AGATTTGTCCCTTGTTAAACCAATCTCTCACTTGTGGCGATAAATTCGGT
AAAGGTTTATTTAGATAGTATAACACCAAACATAtcaaaataattacaaa
atggACCAATGTTGATTTGCTCTTGAACATGGTTAAATACTTTGATTCTC
CAAAGTTGGCCAAAGCTTTAATCTTGTTTTAAAATTGACTGAATCCTGTT
TTCAATTTATACGAAGTTTAGATGTGTACCTTCAAAAGTCTGTAGTATGT
TCTCCACACAATTTATAATAACCAAACCGAGTCAATCATCAAAACACGTT
CGATTGGCTGTTGACCTTTCAATCCTTTTTTCTGCTGTCTTACATCATAG
AAAGCAAGGTCAAACAAGAAACGGTATAGTTATTAATTTAATCTAATAAA
AGAAAGATAACAAAAACATCATTCAAACCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010511-exon-sc0000107-1491911889:138740..139729 | TCONS_00010511-exon-sc0000107-1491911889:138740..139729 | Clytia hemisphaerica | exon |
| TCONS_00010511-exon-sc0000107-1510915933:138740..139729 | TCONS_00010511-exon-sc0000107-1510915933:138740..139729 | Clytia hemisphaerica | exon |
| TCONS_00010511-exon-sc0000107-1575043694:138740..139729 | TCONS_00010511-exon-sc0000107-1575043694:138740..139729 | Clytia hemisphaerica | exon |
| TCONS_00010511-exon-sc0000107-1491911889:139817..141120 | TCONS_00010511-exon-sc0000107-1491911889:139817..141120 | Clytia hemisphaerica | exon |
| TCONS_00010511-exon-sc0000107-1510915933:139817..141120 | TCONS_00010511-exon-sc0000107-1510915933:139817..141120 | Clytia hemisphaerica | exon |
| TCONS_00010511-exon-sc0000107-1575043694:139817..141120 | TCONS_00010511-exon-sc0000107-1575043694:139817..141120 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000107 | supercontig | sc0000107:138740..141120 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003824 |
catalytic activity |
Blast
BLAST of TCONS_00010511 vs. Swiss-Prot (Human)
Match: MEST (Mesoderm-specific transcript homolog protein OS=Homo sapiens GN=MEST PE=2 SV=2) HSP 1 Score: 224.172 bits (570), Expect = 1.123e-65 Identity = 115/305 (37.70%), Postives = 186/305 (60.98%), Query Frame = -2
Query: 1022 PLPNLSPQVRDWFNKGQIFKYNDTFDIFYYDS-GVNTENKDGPILLVIHGFPANSFIWRDLVPEFKTKFSRVVIPDLMGLGFSDKPIGYRYTMMEQSRMLVQLLTQLNLTD--IHVVAHDYGVSIGQELIHQVNQG-SPEIMVKSICFLNGGLVPSRHNILFIQKLFS-SPTFKKIMPYLLTYPIYKNRLSSIFGPHTRPSDTQLEDIWAIMLHKNGHIAIPDIFTYLFERKANEMRWLSALQETKVPVHLVYGPEDPVNTPDGFLKTYKELIPNSSVTVLDN-VGHYPQVEDPDGFIASYMRFL 1918
P P LSP + W + G+ F Y IFY DS GV + I++++HGFP +S+ W + +F RV+ D +G GFSDKP + Y++ EQ+ ++ LL L L + I++++HDYG + QEL+++ Q S + +KS+C NGG+ P H L +QKL I+ L+ + ++ L+ +FGP+TRPS+++L D+WA + + +G++ I + Y+ +RK RW+ AL +P+H +YGP DPVN FL+ Y++ +P S+V++LD+ + HYPQ+EDP GF+ +YM F+
Sbjct: 32 PPPQLSPALHSWKSSGKFFTYKG-LRIFYQDSVGVVGSPE---IVVLLHGFPTSSYDWYKIWEGLTLRFHRVIALDFLGFGFSDKPRPHHYSIFEQASIVEALLRHLGLQNRRINLLSHDYGDIVAQELLYRYKQNRSGRLTIKSLCLSNGGIFPETHRPLLLQKLLKDGGVLSPILTRLMNFFVFSRGLTPVFGPYTRPSESELWDMWAGIRNNDGNLVIDSLLQYINQRKKFRRRWVGALASVTIPIHFIYGPLDPVNPYPEFLELYRKTLPRSTVSILDDHISHYPQLEDPMGFLNAYMGFI 332
The following BLAST results are available for this feature:
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