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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010509 ID=TCONS_00010509|Name=TCONS_00010509|organism=Clytia hemisphaerica|type=transcript|length=1280bp
TTTTTAAGAGTATCCAAAATCTTAGGAAATTTGGTGCttttgagtccata
aagccttaggATGCTCTATACCTGTCTTtaatatttcggccatcgaatCT
TTATATTCTATAGTTTgcttcttatataaaaaacgtgaatATTCACTGGC
TAAAGGACAAAACTTtcacttaatttttttctacacAAAGGTCTGCAATA
ACTATTATCAGTCGCATTTTATCTTGTTTAGGGCAATAATCGATTACACG
CGTCAGTTGGATGGATCAAGACCAATCACTTTCGTTTCTCATATGAGCCC
TTACGATGACAAAGCGGTCAAATACGTGGACGTGGTTTGTTTCAATCGCT
ACTACACGTGGTACAGTGATAGCGGCTACATCGATCTCATTCCTTATCAG
TTGGAACGCGAGTTGAAGTTATGGTATCAAATTCATGGCAAACTTCTTCT
CATGACTGAGTATGGAGCTGATGCGGTCGCAGGCTTGTATCaggtaaatt
ttttgaaaaagctgCTATAAGAATTGAAGACACATCAAAAGTGTGGCCAA
AATGACTTACTTAACTTATCAGCTAAGGAATTTGTTCCCCTTTGCTCTTC
CATTATTCCTTCCTCACCGTAGGCAGTGGGAGTCCAGTATCTTTCCTTGT
GATTCTAGTGATCTAGCCAAAATGTCAGGTTTTAGTTTTGAAGGGGAAGA
CCCgatgttatttttttatgatgatAACCCAGCTGGCATAATAAGTTCTT
ttgacgttcatctaacgttttacAAACTCCAAATAGACGTTACTATGACG
TTTTGCGCCGGCTGGGAATTTTCCGTGGAAAGTCcaacttattttttttt
atgaagatttacattccaggcacacgagggcctctaaaccgatctATCGT
CTACAATTNATGAAgatttacagtccaggcacacgagggcctctaaACCA
ATCTATCGTGTACAATTACAAAGATCTTGATTCGTAGCGCAATGGATATT
CCATCCATGCCTTGGTTAGTTCTTCCTTGAACGCTTCGATGCTAGTAGCG
TTAACATTCTCTTTTGGTAGCTGGCTCCATGCTGTCACACATCGATAATA
AAACGACTTGGTCTGGACACTTCTGAATCCATCGTCTGCAAAGTTTGGTA
TCAGTTCGTAATCGTGAATTCGAGATGGACGCACCCTGCGAATAAACTTT
TCAACTGTGGTGTCCTTATCGTAGAAGTGCAAGTGTTTGTAGATCTGAAC
CATGTCTCCGAAGTGTCTTCTGAATTCGAG Run BLAST on NCBI transcript from alignment at sc0000107:115762..118100+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010509 ID=TCONS_00010509|Name=TCONS_00010509|organism=Clytia hemisphaerica|type=transcript|length=2339bp|location=Sequence derived from alignment at sc0000107:115762..118100+ (Clytia hemisphaerica)
TTTTTAAGAGTATCCAAAATCTTAGGAAATTTGGTGCttttgagtccata
aagccttaggATGCTCTATACCTGTCTTtaatatttcggccatcgaatCT
TTATATTCTATAGTTTgcttcttatataaaaaacgtgaatATTCACTGGC
TAAAGGACAAAACTTtcacttaatttttttctacacAAAGGTCTGCAATA
ACTATTATCAGTCGCATTTTATCTTGTTTAGGGCAATAATCGATTACACG
CGTCAGTTGGATGGATCAAGACCAATCACTTTCGTTTCTCATATGAGCCC
TTACGATGACAAAGCGGTAAGCATCTTTAGTTGGTTTCGTCGTTTaggtt
tttgaataaaataaagTTTGTGCTTTCtcaaataacaaatttgctCAAAC
TATTTAGGATAAGGTCAGGACAAGCCCGAGAAATTAACTCCAATTTAAAA
TgcattcgctttaagtgtgcactaatctttgttttgcttcCCCTTTTTCA
ACGAATGCTACTATTCTAACATATTACATAATATAcggttggaaagataa
ttcagagcgCTATATTCTCTGAgataaattattcaaaattttaagaaatt
gaCTTGAACCCCTTGAAAGAATTTTGGTGTTCTGAGGAAACTTCATTAAG
GATTTTTGCCTCCCGTGATAACTCTCTGATTAATAGACTTTAATGGCCAT
TCACCATATTAAGTTGTAAGCCCTTTAATAGGTTGTTATTTTTGCTCAAA
AGTTTGTTTGGGCCTTGGTTATTTTGCTAAGTCTGGGActgtttgttatt
gtttatgAACCTGAATCATTTTTATTCCGTAAAATCCAGTacaatttttt
aattcgatAGTACATTTATGATCAGCTTGTCACGGAGTTCTTTCAATTCT
GTTCAACCGATTAACCTAAAAGTAAAGAGATCTCCAATGACAGTTATTAA
AAAGATGTATGTCGTAAAAAGGGTGGGTACAAGTTAAAGCTAAAATTAAC
TGCTGAGCGTGGCTTGCCAACTGAGAagattgaattgaattttgcAGGGA
TCAAAGTGCAGTTTTAGGGCATGTTTCATCGGAGTTCAAAGGGACACTAG
GAcagattttttatataagaCAGTAGAAAGTGATACATTGTCTTCCTCAA
GTCACggaaaattaatcaaaataatGTGCTGCCCATGCTAAGTAGACCAT
AGTAGACCACAGCCAAATAAACAAACAACTGTCACGGTGGGAAACGAGGA
GTCGAGAGAATGGGCGTGATTGATCAAATTGCAAGCACCGAGCTTATCCC
GTATTTTTGATAAGATATttgttgaatttaaaaaaacttcatatATAAaa
gcaatataatatttttcaaacgcAGGTCAAATACGTGGACGTGGTTTGTT
TCAATCGCTACTACACGTGGTACAGTGATAGCGGCTACATCGATCTCATT
CCTTATCAGTTGGAACGCGAGTTGAAGTTATGGTATCAAATTCATGGCAA
ACTTCTTCTCATGACTGAGTATGGAGCTGATGCGGTCGCAGGCTTGTATC
aggtaaattttttgaaaaagctgCTATAAGAATTGAAGACACATCAAAAG
TGTGGCCAAAATGACTTACTTAACTTATCAGCTAAGGAATTTGTTCCCCT
TTGCTCTTCCATTATTCCTTCCTCACCGTAGGCAGTGGGAGTCCAGTATC
TTTCCTTGTGATTCTAGTGATCTAGCCAAAATGTCAGGTTTTAGTTTTGA
AGGGGAAGACCCgatgttatttttttatgatgatAACCCAGCTGGCATAA
TAAGTTCTTttgacgttcatctaacgttttacAAACTCCAAATAGACGTT
ACTATGACGTTTTGCGCCGGCTGGGAATTTTCCGTGGAAAGTCcaactta
tttttttttatgaagatttacattccaggcacacgagggcctctaaaccg
atctATCGTCTACAATTNATGAAgatttacagtccaggcacacgagggcc
tctaaACCAATCTATCGTGTACAATTACAAAGATCTTGATTCGTAGCGCA
ATGGATATTCCATCCATGCCTTGGTTAGTTCTTCCTTGAACGCTTCGATG
CTAGTAGCGTTAACATTCTCTTTTGGTAGCTGGCTCCATGCTGTCACACA
TCGATAATAAAACGACTTGGTCTGGACACTTCTGAATCCATCGTCTGCAA
AGTTTGGTATCAGTTCGTAATCGTGAATTCGAGATGGACGCACCCTGCGA
ATAAACTTTTCAACTGTGGTGTCCTTATCGTAGAAGTGCAAGTGTTTGTA
GATCTGAACCATGTCTCCGAAGTGTCTTCTGAATTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010509-exon-sc0000107-1491911889:115762..116077 | TCONS_00010509-exon-sc0000107-1491911889:115762..116077 | Clytia hemisphaerica | exon |
| TCONS_00010509-exon-sc0000107-1510915933:115762..116077 | TCONS_00010509-exon-sc0000107-1510915933:115762..116077 | Clytia hemisphaerica | exon |
| TCONS_00010509-exon-sc0000107-1575043694:115762..116077 | TCONS_00010509-exon-sc0000107-1575043694:115762..116077 | Clytia hemisphaerica | exon |
| TCONS_00010509-exon-sc0000107-1491911889:117137..118100 | TCONS_00010509-exon-sc0000107-1491911889:117137..118100 | Clytia hemisphaerica | exon |
| TCONS_00010509-exon-sc0000107-1510915933:117137..118100 | TCONS_00010509-exon-sc0000107-1510915933:117137..118100 | Clytia hemisphaerica | exon |
| TCONS_00010509-exon-sc0000107-1575043694:117137..118100 | TCONS_00010509-exon-sc0000107-1575043694:117137..118100 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000107 | supercontig | sc0000107:115762..118100 + |
Blast
The following BLAST results are available for this feature:
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