TCONS_00010505 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010505
Unique NameTCONS_00010505
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length649

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010505 ID=TCONS_00010505|Name=TCONS_00010505|organism=Clytia hemisphaerica|type=transcript|length=649bp
TTTGGGATTTTACTAGGGCTGATGAGAGGGGAATCATGCTTGCTCTAAAT
GCCATTGAGTGGGATACTTCTTTTCGAGGTCTAAATGTGGATGAGAGTGT
TGCCCTTCTTTCTGAATATATCTtaaacattttttccaatttcgtTCCCA
ATAAAATAATTACAATCAGGGATAAGGATGCGTTGTGGATGACTCCTGAG
CTTAAACAAATGCTCCTCGACAAAGCTAAAATTTATCGCCGGTGGAAAAA
GCGGGGGGGTCCCTTGGATAAACAGGCACTCGATGACATCTCCAGAAGAT
CTAGACTGGCTATCAAAGAAGCCAAGGAAAACTATTTTACTCGTCTTGGC
AATTCTCTTAACGATCCGAACATTGGAAGTAAGAAATACCGGTCTACCCT
TAAACAATTCTTAGGCATGcgcaaaacaccaaaaatcccaCCCATACGTG
ATAACAGAGACATCCTCGTATCTGATGTTTGTGAGAAAGCCAGCATCCTT
AATTCTTTTTTCGCCGAACAATGTTCTCTTATTGAAACTGGCAGTGTTCT
GCCAGCTGAACAATTCCTTACTGACCTGAGGTTGGAAAACTTAGAATTTG
ACGAAGATAAGATTGAgtctttaataaaatctttaaacataAACAAGGC
Run BLAST on NCBI

protein sequence of TCONS_00010505-protein

>TCONS_00010505-protein ID=TCONS_00010505-protein|Name=TCONS_00010505-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
WDFTRADERGIMLALNAIEWDTSFRGLNVDESVALLSEYILNIFSNFVPN
KIITIRDKDALWMTPELKQMLLDKAKIYRRWKKRGGPLDKQALDDISRRS
RLAIKEAKENYFTRLGNSLNDPNIGSKKYRSTLKQFLGMRKTPKIPPIRD
NRDILVSDVCEKASILNSFFAEQCSLIETGSVLPAEQFLTDLRLENLEFD
EDKIESLIKSLNINK
Run BLAST on NCBI

transcript from alignment at sc0000106:611317..611965

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010505 ID=TCONS_00010505|Name=TCONS_00010505|organism=Clytia hemisphaerica|type=transcript|length=649bp|location=Sequence derived from alignment at sc0000106:611317..611965 (Clytia hemisphaerica)
GCCTTGTTtatgtttaaagattttattaaagacTCAATCTTATCTTCGTC
AAATTCTAAGTTTTCCAACCTCAGGTCAGTAAGGAATTGTTCAGCTGGCA
GAACACTGCCAGTTTCAATAAGAGAACATTGTTCGGCGAAAAAAGAATTA
AGGATGCTGGCTTTCTCACAAACATCAGATACGAGGATGTCTCTGTTATC
ACGTATGGGtgggatttttggtgttttgcgCATGCCTAAGAATTGTTTAA
GGGTAGACCGGTATTTCTTACTTCCAATGTTCGGATCGTTAAGAGAATTG
CCAAGACGAGTAAAATAGTTTTCCTTGGCTTCTTTGATAGCCAGTCTAGA
TCTTCTGGAGATGTCATCGAGTGCCTGTTTATCCAAGGGACCCCCCCGCT
TTTTCCACCGGCGATAAATTTTAGCTTTGTCGAGGAGCATTTGTTTAAGC
TCAGGAGTCATCCACAACGCATCCTTATCCCTGATTGTAATTATTTTATT
GGGAacgaaattggaaaaaatgtttaAGATATATTCAGAAAGAAGGGCAA
CACTCTCATCCACATTTAGACCTCGAAAAGAAGTATCCCACTCAATGGCA
TTTAGAGCAAGCATGATTCCCCTCTCATCAGCCCTAGTAAAATCCCAAA

Coding sequence (CDS) from alignment at sc0000106:611317..611965

>TCONS_00010505 ID=TCONS_00010505|Name=TCONS_00010505|organism=Clytia hemisphaerica|type=CDS|length=645bp|location=Sequence derived from alignment at sc0000106:611317..611965 (Clytia hemisphaerica)
CTTGTTtatgtttaaagattttattaaagacTCAATCTTATCTTCGTCAA
ATTCTAAGTTTTCCAACCTCAGGTCAGTAAGGAATTGTTCAGCTGGCAGA
ACACTGCCAGTTTCAATAAGAGAACATTGTTCGGCGAAAAAAGAATTAAG
GATGCTGGCTTTCTCACAAACATCAGATACGAGGATGTCTCTGTTATCAC
GTATGGGtgggatttttggtgttttgcgCATGCCTAAGAATTGTTTAAGG
GTAGACCGGTATTTCTTACTTCCAATGTTCGGATCGTTAAGAGAATTGCC
AAGACGAGTAAAATAGTTTTCCTTGGCTTCTTTGATAGCCAGTCTAGATC
TTCTGGAGATGTCATCGAGTGCCTGTTTATCCAAGGGACCCCCCCGCTTT
TTCCACCGGCGATAAATTTTAGCTTTGTCGAGGAGCATTTGTTTAAGCTC
AGGAGTCATCCACAACGCATCCTTATCCCTGATTGTAATTATTTTATTGG
GAacgaaattggaaaaaatgtttaAGATATATTCAGAAAGAAGGGCAACA
CTCTCATCCACATTTAGACCTCGAAAAGAAGTATCCCACTCAATGGCATT
TAGAGCAAGCATGATTCCCCTCTCATCAGCCCTAGTAAAATCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005893XLOC_005893Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010505-proteinTCONS_00010505-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010505-exon-sc0000106-1491911889:611317..611965TCONS_00010505-exon-sc0000106-1491911889:611317..611965Clytia hemisphaericaexon
TCONS_00010505-exon-sc0000106-1510915933:611317..611965TCONS_00010505-exon-sc0000106-1510915933:611317..611965Clytia hemisphaericaexon
TCONS_00010505-exon-sc0000106-1575043694:611317..611965TCONS_00010505-exon-sc0000106-1575043694:611317..611965Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000106supercontigsc0000106:611317..611965 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.12884	1.02217	0.365179	0.803859	0.978622	0.687395	1.24397	1.55279	0.543571	1.3466	0.980283	0.859199	1.17976	0.445523	1.60248	0.78615	1.39218	1.3649	0.59999	0.358769	0.545712	0.912614	0.462251	0.504304	1.38512	1.85428	1.32674	0.707965	0.894944	0.273542
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010505 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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