TCONS_00010501 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010501
Unique NameTCONS_00010501
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length362

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010501 ID=TCONS_00010501|Name=TCONS_00010501|organism=Clytia hemisphaerica|type=transcript|length=362bp
AAATCCATGGAAATACTGTGCTAGTCTCGTTTTTACAAGTAAGACAGAAA
ATTAGAccctagattttcattttttttgtcagacaaaaaagttatgatta
gaatcagaaaaaaagttgcGCCATTATTGTGAAATACTATATGATATGTg
ataataataacatcaaaaacttttgttcatAATTTGCGGAAAAATTCATC
CGACTTCAGGATCATGCGCTACTTGCAACTAAAAGCTAACATAATTCTGT
TATCTTGCGCGTAGAGCTTCTAAAATGGCtgctacgcgctcgcttttcca
agtttttcgAATATTTAAAGTATTTGTTGTTAGACAAATATTCACTTTTT
GTCCgataaaaa
Run BLAST on NCBI

transcript from alignment at sc0000106:453104..453465

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010501 ID=TCONS_00010501|Name=TCONS_00010501|organism=Clytia hemisphaerica|type=transcript|length=362bp|location=Sequence derived from alignment at sc0000106:453104..453465 (Clytia hemisphaerica)
tttttatcGGACAAAAAGTGAATATTTGTCTAACAACAAATACTTTAAAT
ATTcgaaaaacttggaaaagcgagcgcgtagcaGCCATTTTAGAAGCTCT
ACGCGCAAGATAACAGAATTATGTTAGCTTTTAGTTGCAAGTAGCGCATG
ATCCTGAAGTCGGATGAATTTTTCCGCAAATTatgaacaaaagtttttga
tgttattattatcACATATCATATAGTATTTCACAATAATGGCgcaactt
tttttctgattctaatcataacttttttgtctgacaaaaaaaatgaaaat
ctagggTCTAATTTTCTGTCTTACTTGTAAAAACGAGACTAGCACAGTAT
TTCCATGGATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005889XLOC_005889Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010501-exon-sc0000106-1491911889:453104..453465TCONS_00010501-exon-sc0000106-1491911889:453104..453465Clytia hemisphaericaexon
TCONS_00010501-exon-sc0000106-1510915933:453104..453465TCONS_00010501-exon-sc0000106-1510915933:453104..453465Clytia hemisphaericaexon
TCONS_00010501-exon-sc0000106-1575043694:453104..453465TCONS_00010501-exon-sc0000106-1575043694:453104..453465Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000106supercontigsc0000106:453104..453465 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.463761	1.35672	2.10038	1.28431	1.25082	0.741309	0.894357	2.51186	1.17241	1.93629	1.87941	1.69874	1.54217	1.12109	1.05336	0.706508	0.174072	0.356836	1.23247	1.80557	0.448391	0.984192	0.26587	0	2.24064	1.55534	2.86159	0	5.9195	3.67106
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010501 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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