TCONS_00010482 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010482
Unique NameTCONS_00010482
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length759

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010482 ID=TCONS_00010482|Name=TCONS_00010482|organism=Clytia hemisphaerica|type=transcript|length=759bp
TGAGTATTCCACTTCCTCTTGGAACTATCACCATCTTGTGTATCGATCTT
GGAACTGATTTGGTACCCGCCATCTCTCTCGCTTACGAAAAAGCCGAAAG
TGACATCATGAAACGTAAACCACGTGACCCCATCCGTGATAAATTGGTGA
ACGAACGCTTGATCAGTTTGGCTTACGGACAAATTGGTATGATTCAGGCC
ATTGCTGGATTTTTCACCTACTTCGTCATCATGGCAGAGAACGGATGGTT
ACCAACCTACTTGGTGGGAATCCGCTCCCAATGGGATGACAAGCAGAACA
ATGCAGTCCGCGATTCTTATGGTAGTGAATGGAGTTATGTTCAACGAAAG
AATTTGGAATTGACTTGCCACACTGCTTTCTTTACCACCATCGTTGTTGT
CCAATGGGCTGACGTCATTATTTCAAAAACCAGAAAGCTTTCTGTCTTCC
AACAAGGAATGAAcaaCTGGATGTTGAACTTCGGTTTAATTTTCGAAACG
GTTCTTGCTGCCTTCTTGCAATACACCCCTGGATTGAACGAAGGCTTGAA
GCTGCGTCCACTGAATGCTTCGTGGTGGTTCTGTGGTGTCCCATTCTCTC
TCTTGATCTGGGTTTACGATGAAATCAGAAGATACTTAATCAGAAAGTAT
CCAGGAGGATGGGTCGAGCACGAGACCTATTATTAGGAAACAACACACGG
GTTAACAGAAAGTCGGACTTTGAACTTGGACATGGAAATGGAAAACattc
tctttttta
Run BLAST on NCBI

protein sequence of TCONS_00010482-protein

>TCONS_00010482-protein ID=TCONS_00010482-protein|Name=TCONS_00010482-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
SIPLPLGTITILCIDLGTDLVPAISLAYEKAESDIMKRKPRDPIRDKLVN
ERLISLAYGQIGMIQAIAGFFTYFVIMAENGWLPTYLVGIRSQWDDKQNN
AVRDSYGSEWSYVQRKNLELTCHTAFFTTIVVVQWADVIISKTRKLSVFQ
QGMNNWMLNFGLIFETVLAAFLQYTPGLNEGLKLRPLNASWWFCGVPFSL
LIWVYDEIRRYLIRKYPGGWVEHETYY
Run BLAST on NCBI

transcript from alignment at sc0000106:618049..619622-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010482 ID=TCONS_00010482|Name=TCONS_00010482|organism=Clytia hemisphaerica|type=transcript|length=1574bp|location=Sequence derived from alignment at sc0000106:618049..619622- (Clytia hemisphaerica)
TGAGTATTCCACTTCCTCTTGGAACTATCACCATCTTGTGTATCGATCTT
GGAACTGATTTGGTACCCGCCATCTCTCTCGCTTACGAAAAAGCCGAAAG
TGACATCATGAAACGTAAACCACGTGACCCCATCCGTGATAAATTGGTGA
ACGAACGCTTGATCAGTTTGGCTTACGGACAAATTGGTATGATTCAGGTA
GGTGATATAAAAGCTAAAAAGCTTGACATTTCCATTTTGTCTTGCTGTTG
TTTGTTAGTGGCTCTGACTGCGTTAATAATTATAATATCTGATAGAATTA
ATAGATGCTGACGATGGTAAGAACCGAGTTACAAGTGGCCCCCAAAACGT
AGGGTTCTGACCTGTAGATTTATCAGAATTAGACGATTTTTGTTTATTTT
GAAAGAATATTGTCATACCTAAAAATGAGTATGTTTTTGATGGTTGGAGA
CGAATTCAAAATAACATATTTGCATCTGAAGGACATATTTGCGTCTGAAG
GACATATTTCAACACTAAAATTAGATAAAAATTGCATATAACTCACTCTA
GCTCCTTAGATAGTGAAAATTAGGGCCACATACTGTAATATAAACCATTT
AATATCATATTCCCGTTTTCCCTTCTGCAGGCCATTGCTGGATTTTTCAC
CTACTTCGTCATCATGGCAGAGAACGGATGGTTACCAACCTACTTGGTGG
GAATCCGCTCCCAATGGGATGACAAGCAGAACAATGCAGTCCGCGATTCT
TATGGTAGTGAATGGAGTTATGTTCAACGAAAGAATTTGGAATTGACTTG
CCACACTGCTTTCTTTACCACCATCGTTGTTGTCCAATGGGCTGACGTCA
TTATTTCAAAAACCAGAAAGCTTTCTGTCTTCCAACAAGGAATGAAGTAA
GTGTTATTCTTTTTTATTATTCTGATGTGCAACTCGTGAAGTAATGAAAT
CACAACTAAAATAGTTCTCGATAGCTCATTCGTAACGCTTTCTTGGCTGA
GCCTCGTTATCTTGCCTTTTCAAATGGCTTTCAATGATTTTGCCGAAGGC
GTGAAGATAGCAGATATTTATTTTAAATGGTCTAACGAAGTCTTCATTTT
GTTTTTTTAGCAACTGGATGTTGAACTTCGGTTTAATTTTCGAAACGGTT
CTTGCTGCCTTCTTGCAATACACCCCTGGATTGAACGAAGGCTTGAAGCT
GCGTCCACTGAATGCTTCGTGGTGGTTCTGTGGTGTCCCATTCTCTCTCT
TGATCTGGGTTTACGATGAAATCAGAAGATACTTAATCAGAAAGTATCCA
GGAGGTACATCTTCAATTTTCTTCATGGTTCTTAGCGGGCTCAGACTAAC
TTACCTTGAGTTGAAGATTTTTTCTGGCTTGGGTATTTACCTCATGTGTG
ATTATCTCTCATTATCCGTTTTCATTATCAAATTGTTCAGTCTTTGAACT
AAGTTTTCATTTCTATTTTCAGGATGGGTCGAGCACGAGACCTATTATTA
GGAAACAACACACGGGTTAACAGAAAGTCGGACTTTGAACTTGGACATGG
AAATGGAAAACATTCTCTTTTTTA

Coding sequence (CDS) from alignment at sc0000106:618049..619622-

>TCONS_00010482 ID=TCONS_00010482|Name=TCONS_00010482|organism=Clytia hemisphaerica|type=CDS|length=2736bp|location=Sequence derived from alignment at sc0000106:618049..619622- (Clytia hemisphaerica)
GATGGGTCGAGCACGAGACCTATTATTAGCAACTGGATGTTGAACTTCGG
TTTAATTTTCGAAACGGTTCTTGCTGCCTTCTTGCAATACACCCCTGGAT
TGAACGAAGGCTTGAAGCTGCGTCCACTGAATGCTTCGTGGTGGTTCTGT
GGTGTCCCATTCTCTCTCTTGATCTGGGTTTACGATGAAATCAGAAGATA
CTTAATCAGAAAGTATCCAGGAGGCCATTGCTGGATTTTTCACCTACTTC
GTCATCATGGCAGAGAACGGATGGTTACCAACCTACTTGGTGGGAATCCG
CTCCCAATGGGATGACAAGCAGAACAATGCAGTCCGCGATTCTTATGGTA
GTGAATGGAGTTATGTTCAACGAAAGAATTTGGAATTGACTTGCCACACT
GCTTTCTTTACCACCATCGTTGTTGTCCAATGGGCTGACGTCATTATTTC
AAAAACCAGAAAGCTTTCTGTCTTCCAACAAGGAATGAAAGTATTCCACT
TCCTCTTGGAACTATCACCATCTTGTGTATCGATCTTGGAACTGATTTGG
TACCCGCCATCTCTCTCGCTTACGAAAAAGCCGAAAGTGACATCATGAAA
CGTAAACCACGTGACCCCATCCGTGATAAATTGGTGAACGAACGCTTGAT
CAGTTTGGCTTACGGACAAATTGGTATGATTCAGGATGGGTCGAGCACGA
GACCTATTATTAGCAACTGGATGTTGAACTTCGGTTTAATTTTCGAAACG
GTTCTTGCTGCCTTCTTGCAATACACCCCTGGATTGAACGAAGGCTTGAA
GCTGCGTCCACTGAATGCTTCGTGGTGGTTCTGTGGTGTCCCATTCTCTC
TCTTGATCTGGGTTTACGATGAAATCAGAAGATACTTAATCAGAAAGTAT
CCAGGAGGCCATTGCTGGATTTTTCACCTACTTCGTCATCATGGCAGAGA
ACGGATGGTTACCAACCTACTTGGTGGGAATCCGCTCCCAATGGGATGAC
AAGCAGAACAATGCAGTCCGCGATTCTTATGGTAGTGAATGGAGTTATGT
TCAACGAAAGAATTTGGAATTGACTTGCCACACTGCTTTCTTTACCACCA
TCGTTGTTGTCCAATGGGCTGACGTCATTATTTCAAAAACCAGAAAGCTT
TCTGTCTTCCAACAAGGAATGAAAGTATTCCACTTCCTCTTGGAACTATC
ACCATCTTGTGTATCGATCTTGGAACTGATTTGGTACCCGCCATCTCTCT
CGCTTACGAAAAAGCCGAAAGTGACATCATGAAACGTAAACCACGTGACC
CCATCCGTGATAAATTGGTGAACGAACGCTTGATCAGTTTGGCTTACGGA
CAAATTGGTATGATTCAGGATGGGTCGAGCACGAGACCTATTATTAGCAA
CTGGATGTTGAACTTCGGTTTAATTTTCGAAACGGTTCTTGCTGCCTTCT
TGCAATACACCCCTGGATTGAACGAAGGCTTGAAGCTGCGTCCACTGAAT
GCTTCGTGGTGGTTCTGTGGTGTCCCATTCTCTCTCTTGATCTGGGTTTA
CGATGAAATCAGAAGATACTTAATCAGAAAGTATCCAGGAGGCCATTGCT
GGATTTTTCACCTACTTCGTCATCATGGCAGAGAACGGATGGTTACCAAC
CTACTTGGTGGGAATCCGCTCCCAATGGGATGACAAGCAGAACAATGCAG
TCCGCGATTCTTATGGTAGTGAATGGAGTTATGTTCAACGAAAGAATTTG
GAATTGACTTGCCACACTGCTTTCTTTACCACCATCGTTGTTGTCCAATG
GGCTGACGTCATTATTTCAAAAACCAGAAAGCTTTCTGTCTTCCAACAAG
GAATGAAAGTATTCCACTTCCTCTTGGAACTATCACCATCTTGTGTATCG
ATCTTGGAACTGATTTGGTACCCGCCATCTCTCTCGCTTACGAAAAAGCC
GAAAGTGACATCATGAAACGTAAACCACGTGACCCCATCCGTGATAAATT
GGTGAACGAACGCTTGATCAGTTTGGCTTACGGACAAATTGGTATGATTC
AGGATGGGTCGAGCACGAGACCTATTATTAGCAACTGGATGTTGAACTTC
GGTTTAATTTTCGAAACGGTTCTTGCTGCCTTCTTGCAATACACCCCTGG
ATTGAACGAAGGCTTGAAGCTGCGTCCACTGAATGCTTCGTGGTGGTTCT
GTGGTGTCCCATTCTCTCTCTTGATCTGGGTTTACGATGAAATCAGAAGA
TACTTAATCAGAAAGTATCCAGGAGGCCATTGCTGGATTTTTCACCTACT
TCGTCATCATGGCAGAGAACGGATGGTTACCAACCTACTTGGTGGGAATC
CGCTCCCAATGGGATGACAAGCAGAACAATGCAGTCCGCGATTCTTATGG
TAGTGAATGGAGTTATGTTCAACGAAAGAATTTGGAATTGACTTGCCACA
CTGCTTTCTTTACCACCATCGTTGTTGTCCAATGGGCTGACGTCATTATT
TCAAAAACCAGAAAGCTTTCTGTCTTCCAACAAGGAATGAAAGTATTCCA
CTTCCTCTTGGAACTATCACCATCTTGTGTATCGATCTTGGAACTGATTT
GGTACCCGCCATCTCTCTCGCTTACGAAAAAGCCGAAAGTGACATCATGA
AACGTAAACCACGTGACCCCATCCGTGATAAATTGGTGAACGAACGCTTG
ATCAGTTTGGCTTACGGACAAATTGGTATGATTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005870XLOC_005870Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010482-exon-sc0000106-1575043694:619426..619622TCONS_00010482-exon-sc0000106-1575043694:619426..619622Clytia hemisphaericaexon
TCONS_00010482-exon-sc0000106-1575043694:618727..618992TCONS_00010482-exon-sc0000106-1575043694:618727..618992Clytia hemisphaericaexon
TCONS_00010482-exon-sc0000106-1575043694:618319..618512TCONS_00010482-exon-sc0000106-1575043694:618319..618512Clytia hemisphaericaexon
TCONS_00010482-exon-sc0000106-1575043694:618049..618150TCONS_00010482-exon-sc0000106-1575043694:618049..618150Clytia hemisphaericaexon
TCONS_00010482-exon-sc0000106-1510915933:619426..619622TCONS_00010482-exon-sc0000106-1510915933:619426..619622Clytia hemisphaericaexon
TCONS_00010482-exon-sc0000106-1510915933:618727..618992TCONS_00010482-exon-sc0000106-1510915933:618727..618992Clytia hemisphaericaexon
TCONS_00010482-exon-sc0000106-1510915933:618319..618512TCONS_00010482-exon-sc0000106-1510915933:618319..618512Clytia hemisphaericaexon
TCONS_00010482-exon-sc0000106-1510915933:618049..618150TCONS_00010482-exon-sc0000106-1510915933:618049..618150Clytia hemisphaericaexon
TCONS_00010482-exon-sc0000106-1491911889:619426..619622TCONS_00010482-exon-sc0000106-1491911889:619426..619622Clytia hemisphaericaexon
TCONS_00010482-exon-sc0000106-1491911889:618727..618992TCONS_00010482-exon-sc0000106-1491911889:618727..618992Clytia hemisphaericaexon
TCONS_00010482-exon-sc0000106-1491911889:618319..618512TCONS_00010482-exon-sc0000106-1491911889:618319..618512Clytia hemisphaericaexon
TCONS_00010482-exon-sc0000106-1491911889:618049..618150TCONS_00010482-exon-sc0000106-1491911889:618049..618150Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010482-proteinTCONS_00010482-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000106supercontigsc0000106:618049..619622 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
439.662	369.094	650.29	641.95	534.24	418.094	450.293	478.907	407.64	416.197	445.513	382.58	633.165	713.016	327.022	371.812	526.423	469.952	434.183	326.728	503.895	498.005	514.939	457.179	191.143	193.807	1045.39	1366.01	318.065	322.694
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006068ATPase_P-typ_cation-transptr_C
IPR023298ATPase_P-typ_TM_dom
Blast
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BLAST of TCONS_00010482 vs. Swiss-Prot (Human)
Match: AT1A2 (Sodium/potassium-transporting ATPase subunit alpha-2 OS=Homo sapiens GN=ATP1A2 PE=1 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 1.002e-113
Identity = 159/227 (70.04%), Postives = 191/227 (84.14%), Query Frame = 3 
Query:    3 SIPLPLGTITILCIDLGTDLVPAISLAYEKAESDIMKRKPRDPIRDKLVNERLISLAYGQIGMIQAIAGFFTYFVIMAENGWLPTYLVGIRSQWDDKQNNAVRDSYGSEWSYVQRKNLELTCHTAFFTTIVVVQWADVIISKTRKLSVFQQGMNNWMLNFGLIFETVLAAFLQYTPGLNEGLKLRPLNASWWFCGVPFSLLIWVYDEIRRYLIRKYPGGWVEHETYY 683
            +IPLPLGT+TILCIDLGTD+VPAISLAYE AESDIMKR+PR+   DKLVNERLIS+AYGQIGMIQA+ GFFTYFVI+AENG+LP+ L+GIR  WDD+  N + DSYG EW+Y QRK +E TCHTAFF +IVVVQWAD+II KTR+ SVFQQGM N +L FGL+ ET LAAFL Y PG+   L++ PL  +WWFC  P+SLLI++YDE+R+ ++R+YPGGWVE ETYY
Sbjct:  794 NIPLPLGTVTILCIDLGTDMVPAISLAYEAAESDIMKRQPRNSQTDKLVNERLISMAYGQIGMIQALGGFFTYFVILAENGFLPSRLLGIRLDWDDRTMNDLEDSYGQEWTYEQRKVVEFTCHTAFFASIVVVQWADLIICKTRRNSVFQQGMKNKILIFGLLEETALAAFLSYCPGMGVALRMYPLKVTWWFCAFPYSLLIFIYDEVRKLILRRYPGGWVEKETYY 1020
The following BLAST results are available for this feature:
BLAST of TCONS_00010482 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AT1A21.002e-11370.04Sodium/potassium-transporting ATPase subunit alpha... [more]
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