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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010481 ID=TCONS_00010481|Name=TCONS_00010481|organism=Clytia hemisphaerica|type=transcript|length=2690bpRun BLAST on NCBI protein sequence of TCONS_00010481-protein >TCONS_00010481-protein ID=TCONS_00010481-protein|Name=TCONS_00010481-protein|organism=Clytia hemisphaerica|type=polypeptide|length=698bp MSRNNLSNSEFPLLLEKMSEKCSPPDLDNLLRLDPYLNDFKTDIANRYASRun BLAST on NCBI transcript from alignment at sc0000106:577035..584321- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010481 ID=TCONS_00010481|Name=TCONS_00010481|organism=Clytia hemisphaerica|type=transcript|length=7287bp|location=Sequence derived from alignment at sc0000106:577035..584321- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000106:577035..584321- >TCONS_00010481 ID=TCONS_00010481|Name=TCONS_00010481|organism=Clytia hemisphaerica|type=CDS|length=27261bp|location=Sequence derived from alignment at sc0000106:577035..584321- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010481 vs. Swiss-Prot (Human)
Match: GLGB (1,4-alpha-glucan-branching enzyme OS=Homo sapiens GN=GBE1 PE=1 SV=3) HSP 1 Score: 849.736 bits (2194), Expect = 0.000e+0 Identity = 399/658 (60.64%), Postives = 500/658 (75.99%), Query Frame = 1
Query: 445 FKTDIANRYASFHETLEQINQNEGGLDKFSASYKNFGLVVQKDGIL-CREWIPDVVNVWLYGDFNEWNRTSHKFERKDFGKWELFIPLTSDGKHPIHHASKYKLLVEVVQGNIVERLSPWASYVLQDNQTKLYEASFWNPVTPFSFNNARPKKPRSLRIYESHVGIASAEYGIATYSQFKTNLLPYIKDLGYNAIQLMAIMEHAYYASFGYQVTSFFAASSRYGTPDELKELIDEAHRLGLVVLLDVVHSHASKNVADGLNQFNGTNGCFFHDNTRGFHSLWDSRLFNYKDWEVLRFLLSNLRWYMDEYQFDGFRFDGVTSMLYHHHGIGTGFSGGYHEYFSMNADVEAVNYLQLANHMLHELYPDVITIAEDVSGMPALCRPVNEGGLGFDYRLAMALPDMWIKILKEQKDEDWDIGNIVHTLENRRYKEKNICYAESHDQALVGDKTLAFWLMDKEMYTQMSTLQPMNAIVDRGMALHKMIRLLTCALGGEGYLTFMGNEFGHPEWLDFPREGNQDSYHYARRQYNLVQDPILRFGQLKEFEKKMLMVDDKHQFLPADPGFVTCKNGGDKTIAFERAGLIFCFNFHHDKSFPGYPVGTNLPGKYKIMLDSDNKDFGGHGRLDPQCHYLTEQKSFNGREHCLTVYLPSRTAIILAKV 2415
+ D RY F + L+ I +NEGG+DKFS Y++FG+ DG L C+EW P V+L GDFN WN S+ +++ D+GKWEL+IP + + H SK K+++ G I+ R+SPWA YV+++ Y+ W+P + F ++RPKKPRSLRIYESHVGI+S E +A+Y F N+LP IK LGYN IQLMAIMEHAYYASFGYQ+TSFFAASSRYGTP+EL+EL+D AH +G++VLLDVVHSHASKN ADGLN F+GT+ C+FH RG H LWDSRLF Y WE+LRFLLSN+RW+++EY+FDGFRFDGVTSMLYHHHG+G GFSG Y EYF + D +A+ YL LANH++H L PD ITIAEDVSGMPALC P+++GG GFDYRLAMA+PD WI++LKE KDEDW++G+IV+TL NRRY EK I YAESHDQALVGDK+LAFWLMD EMYT MS L P ++DRG+ LHKMIRL+T LGGEGYL FMGNEFGHPEWLDFPR+GN +SYHYARRQ++L D +LR+ L F++ M +++++ +L A +V+ K+ G+K IAFERAGL+F FNFH KS+ Y VGT LPGK+KI+LDSD ++GGH RLD + +E NGR + L VY+PSR A+IL V
Sbjct: 41 YAVDFQRRYKQFSQILKNIGENEGGIDKFSRGYESFGVHRCADGGLYCKEWAPGAEGVFLTGDFNGWNPFSYPYKKLDYGKWELYIPPKQNKSVLVPHGSKLKVVITSKSGEILYRISPWAKYVVREGDNVNYDWIHWDPEHSYEFKHSRPKKPRSLRIYESHVGISSHEGKVASYKHFTCNVLPRIKGLGYNCIQLMAIMEHAYYASFGYQITSFFAASSRYGTPEELQELVDTAHSMGIIVLLDVVHSHASKNSADGLNMFDGTDSCYFHSGPRGTHDLWDSRLFAYSSWEILRFLLSNIRWWLEEYRFDGFRFDGVTSMLYHHHGVGQGFSGDYSEYFGLQVDEDALTYLMLANHLVHTLCPDSITIAEDVSGMPALCSPISQGGGGFDYRLAMAIPDKWIQLLKEFKDEDWNMGDIVYTLTNRRYLEKCIAYAESHDQALVGDKSLAFWLMDAEMYTNMSVLTPFTPVIDRGIQLHKMIRLITHGLGGEGYLNFMGNEFGHPEWLDFPRKGNNESYHYARRQFHLTDDDLLRYKFLNNFDRDMNRLEERYGWLAAPQAYVSEKHEGNKIIAFERAGLLFIFNFHPSKSYTDYRVGTALPGKFKIVLDSDAAEYGGHQRLDHSTDFFSEAFEHNGRPYSLLVYIPSRVALILQNV 698 The following BLAST results are available for this feature:
BLAST of TCONS_00010481 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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