|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010478 ID=TCONS_00010478|Name=TCONS_00010478|organism=Clytia hemisphaerica|type=transcript|length=3436bpRun BLAST on NCBI transcript from alignment at sc0000106:522555..532760- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010478 ID=TCONS_00010478|Name=TCONS_00010478|organism=Clytia hemisphaerica|type=transcript|length=10206bp|location=Sequence derived from alignment at sc0000106:522555..532760- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00010478 vs. Swiss-Prot (Human)
Match: MALR1 (MAM and LDL-receptor class A domain-containing protein 1 OS=Homo sapiens GN=MALRD1 PE=1 SV=4) HSP 1 Score: 272.707 bits (696), Expect = 1.445e-74 Identity = 249/904 (27.54%), Postives = 380/904 (42.04%), Query Frame = 3
Query: 1212 FQKDMCGFTQDKSDNFDWRRHRGQTSSSNTGPKADHXXXXXXXXXXXXXXXNT-GVNQRGRIMKDYTGLKKGGSCLTFWYHMFGIHQGTLKVYT------NATSTSPIFSVTGQQ---GNLWVKGEATITSTSAKVIFEGITSWGYAGDMALDDIQVLDGPCPIP-------------GQCSFQNGWCTWYNIPNSQGDNFDWIIXXXXXXXX----XXXPSADRFGSKTGKYVFL--ESSSPRRTGDKTRLVSEVFNQTSSNGQCFIFYYHMLGTSIGS--LNIYVNASGTENLVWTLSGNKGNKWLNGQVNVGRARGSYKIIIEGVRGTSYTGDIAIDDFTFKKGSCSI-VPSDALPG----------------QXXXXXXXXXXXXXXXXXXXGFNCNFETGICSNWYQDTTDQLNWSLGQGQTSSFGTGPKTDHTLKNAYGKYAFLEVS-GQKKNATARLVSQKMAATNANAGKCLSFWYHMYGPHIGTLNIYVAVGSKLTGLKPFWSRSGTQGNKWIQGLVTLHAGQPFNTVFEATVGTSYQGDIAIDDISV---------------------------------------SDGKCVQPSTTCTFENDACGYTNDKAD-------------FNWAR-------NSKNTNSFGTG-------------PKTDHTLQSASGFYLYTEASGRKFRDTARILSPIEKPTTASC-LQFWYHMYGTGMGTLSVLKKDSRGLSRTPLWRESGNQGDQWRVASVTISSRSDFQIAFEGVIGRNYQSDIAIDDVKY--------------------------------------------TSGAC-PSPGYCDFENGLCTYINSKKDDFDWIVGSAGTASFFTGPKFDHTTGSKNGSYVFLESSNPRK 3422
F+ CG+ +++ W+ +G + + P ADHT G ++Y+E + GV + G + + FWYH+ L V+T N I + Q + + EA ++ ++I E T +ALDDI V C I +C F+ C W+ + GD+FDWI S S+ P + G ++F+ +SSS + +L S F+QT G F+++ G S+G+ L +++ S ++W + N+G +WL + +GR + + ++ V Y G AIDD F+ +C++ +P+++ G + + A CNFETGIC NW QD D +W+ QG T + TGP D+TL A G Y ++E S Q +A L+S + AT+ G F+YHM+G I L IY + S G + W G QGN+WI+ + + + QPF + EA+VG + GDIAIDD+S SDG C++ C F+ D C +D+A W + NT +G G P DHT + G+YLY ++S KF DTA IL+PI T C L FW HM G +G+L VL K S+ LW ++G QG QW+ A V + RS QI F G +Y D+A+DD+ + T+ C S G CDFE LC++ K +DFDW + ++ + T P DHT G+ +G Y+F++S P++
Sbjct: 478 FESGFCGWEPFLTEDSHWKLMKGLNNGEHHFPAADHTANINHGSFIYLEAQRSPGVAKLGSPVLTKLLTASTPCQVQFWYHL--SQHSNLSVFTRTSLDGNLQKQGKIIRFSESQWSHAKIDLIAEAGESTLPFQLILEA-TVLSSNATVALDDISV-SQECEISYKSLPRTSTQSKFSKCDFEANSCDWFEAIS--GDHFDWIRSSQSELSADFEHQAPPRDHSLNASQGHFMFILKKSSSLWQVA---KLQSPTFSQTGP-GCILSFWFYNYGLSVGAAELQLHMENSHDSTVIWRVLYNQGKQWLEATIQLGRLSQPFHLSLDKVSLGIYDGVSAIDDIRFE--NCTLPLPAESCEGLDHFWCRHTRACIEKLRLCDLVDDCGDRTDEVNCAPELQCNFETGIC-NWEQDAKDDFDWTRSQGPTPTLNTGPMKDNTLGTAKGHYLYIESSEPQAFQDSAALLSPILNATDTK-GCTFRFYYHMFGKRIYRLAIYQRIWSDSRG-QLLWQIFGNQGNRWIRKHLNISSRQPFQILVEASVGDGFTGDIAIDDLSFMDCTLYPGNLPADLPTPPETSVPVTLPPHNCTDNEFICRSDGHCIEKMQKCDFKYD-CPDKSDEASCVMEVCSFEKRSLCKWYQPIPVHLLQDSNTFRWGLGNGISIHHGEENHRPSVDHTQNTTDGWYLYADSSNGKFGDTADILTPIISLTGPKCTLVFWTHMNGATVGSLQVLIKKDNVTSK--LWAQTGQQGAQWKRAEVFLGIRSHTQIVFRAKRGISYIGDVAVDDISFQDCSPLLSPERKCTDHEFMCANKHCIAKDKLCDFVNDCADNSDETTFICRTSSGRCDFEFDLCSWKQEKDEDFDWNLKASSIPAAGTEPAADHTLGNSSGHYIFIKSLFPQQ 1363 HSP 2 Score: 269.24 bits (687), Expect = 1.459e-73 Identity = 269/1073 (25.07%), Postives = 439/1073 (40.91%), Query Frame = 3
Query: 825 GFYMFIEASR-PRRKGDNAVLLSKQQTG-TKC-LSFWYHMFGPHVDRLVISTVSSGKRGAALWQMKGTKGNQWLNSNVTI--NANKSMTSYQIVIEAIRGVDYKGDISIDDIVMXXXXXXXXXXXXXXXXXXX----XFQKDMCG-FTQDKSDNFDWRRHRGQTSSSN---TGPKADHXXXXXXXXXXXXXXXNTGVNQRGRIMKDYTGLKKGGSCLTFWYHMFGIHQGTLKV---YTNATSTSPIFSVTGQQGNLWVKGEATI----TSTSAKVIFEGITSWGYAGDMALDDIQVLDGPCPIPG-------------------------------------------QCSFQNGWCTWYNIPNSQGDNFDWIIXXXXXXXXXXXPSADR-FGSKTGKYVFLESSSPRRTGDKTRLVSEVFNQTSSNGQCFIFYYHMLGTSIGSLNIY--VNASGTENLVWTLSGNKGNKWLNGQVNVGRARGSYKIIIEGVRGTSYTGD-----IAIDDFTFKKGSCSI---------VPSDALPGQXXXXXXXXXXXXXXXXXXXGFN------------------CNFETGICSNWYQDTTDQL-------NWSLGQGQTSSFGTG---PKTDHTLKNAYGKYAFLEVSGQKKNATARLVSQKMAATNANAGKC-LSFWYHMYGPHIGTLNIYVA---VGSKLTGLKPFWSRSGTQGNKWIQGLVTLHAGQPFNTVFEATVGTSYQGDIAIDDISVSDGK--------------------------------------------CVQPSTTCTFENDACGYTNDK-ADFNWARNSKNTNSFGTGPKTDHTLQSASGFYLYTEAS-GRKFRDTARILSPIEKPTTASC-LQFWYHMYGTGMGTLSVLKKDSRGLSRTPLWRESGNQGDQWRVASVTISSRSDFQIAFEGVIGRNYQSDIAIDDVKYT-------------------SGACPSPGY---------------------------------CDFENGLCTYINSKKDDFDWIVGSAGTASFFTGPKFDHTTGSKNGSYVFLESS 3410
G ++++EA R P + +L+K T T C + FWYH+ H + V + S ++ +QW ++ + + A +S +Q+++EA + +++DDI ++ + +S F+ + C F D+FDW R S++ P DH+ + G+++++ ++ + Q ++ G L+FW++ +G+ G ++ N+ ++ I+ V QG W+ EATI S + + ++ Y G A+DDI+ + P+P QC+F+ G C W D+FDW G T + TGP D G+ G Y+++ESS P+ D L+S + N T + G F FYYHM G I L IY + + L+W + GN+GN+W+ +N+ +R ++I++E G +TGD ++ D T G+ VP P T + + C+FE WYQ L W LG G + G P DHT G Y + + S K TA +++ ++ T KC L FW HM G +G+L + + V SKL W+++G QG +W + V L VF A G SY GD+A+DDIS D C S C FE D C + +K DF+W + + + GT P DHTL ++SG Y++ ++ ++ ARI SP+ + +C + F YHMYG G+G L++++ ++ L + QG+ WR +++ DFQ+ FEG +G+ + DIA+DD+ T +G CP GY C FE G C + NS+ D+FDW++G G+ PK DHT G++NG +++LE++
Sbjct: 520 GSFIYLEAQRSPGVAKLGSPVLTKLLTASTPCQVQFWYHL-SQHSNLSVFTRTSLDGNLQKQGKIIRFSESQWSHAKIDLIAEAGESTLPFQLILEATV-LSSNATVALDDISVSQECEISYKSLPRTSTQSKFSKCDFEANSCDWFEAISGDHFDWIRSSQSELSADFEHQAPPRDHSLNASQGHFMFILKKSSSLWQVAKLQSPTFSQTGPGCILSFWFYNYGLSVGAAELQLHMENSHDSTVIWRVLYNQGKQWL--EATIQLGRLSQPFHLSLDKVSLGIYDGVSAIDDIRFENCTLPLPAESCEGLDHFWCRHTRACIEKLRLCDLVDDCGDRTDEVNCAPELQCNFETGICNW---EQDAKDDFDWTRSQGPTPTLNTGPMKDNTLGTAKGHYLYIESSEPQAFQDSAALLSPILNATDTKGCTFRFYYHMFGKRIYRLAIYQRIWSDSRGQLLWQIFGNQGNRWIRKHLNIS-SRQPFQILVEASVGDGFTGDIAIDDLSFMDCTLYPGNLPADLPTPPETSVPVTLPPHNCTDNEFICRSDGHCIEKMQKCDFKYDCPDKSDEASCVMEVCSFEKRSLCKWYQPIPVHLLQDSNTFRWGLGNGISIHHGEENHRPSVDHTQNTTDGWYLYADSSNGKFGDTADILTPIISLTGP---KCTLVFWTHMNGATVGSLQVLIKKDNVTSKL------WAQTGQQGAQWKRAEVFLGIRSHTQIVFRAKRGISYIGDVAVDDISFQDCSPLLSPERKCTDHEFMCANKHCIAKDKLCDFVNDCADNSDETTFICRTSSGRCDFEFDLCSWKQEKDEDFDWNLKASSIPAAGTEPAADHTLGNSSGHYIFIKSLFPQQPMRAARISSPVISKRSKNCKIIFHYHMYGNGIGALTLMQVSVTNQTKV-LLNLTVEQGNFWRREELSLFGDEDFQLKFEGRVGKGQRGDIALDDIVLTENCLSLHDSVQEELAVPLPTGFCPL-GYRECHNGKCYRLEQSCNFVDNCGDNTDENECGSSCTFEKGWCGWQNSQADNFDWVLG-VGSHQSLRPPK-DHTLGNENGHFMYLEAT 1571 HSP 3 Score: 190.274 bits (482), Expect = 9.850e-49 Identity = 205/810 (25.31%), Postives = 316/810 (39.01%), Query Frame = 3
Query: 1272 HRGQTSSSNTGPKADHXXXXXXXXXXXXXXXNTGVNQRGRIMKDYTGLKKGGSCLTFWYHMFGIHQGTLKVYTNATS-TSPIFSVTGQQGNLWVKGEATI-TSTSAKVIFEGITSWGYAGDMALDDIQVLD-GPCPIP--------------------------------------------GQCSFQNGWCTWYNIPNSQGDNFDWIIXXXXXXXXXXXPSADR-FGSKTGKYVFLESSSPRRTGDKTRLVSEVFNQTSSNGQCFIFYYHMLGTSIGSLNIY-VNASGTENLVWTLSGNKGNKWLNGQVNVGRARGSYKIIIEGVRGTSYTGDIAIDDFTFKKGSCSI-----------VPSDALP------------GQXXXXXXXXXXXXXXXXXXXGFNCNFETGICSNWYQDTTDQLNWSLGQGQTSSFGTGPKTDHTLKNAYGKYAFLEVS-----GQKKNATARLVSQKMAATNANAGKCLSFWYHMYGPHIGTLNIYVAVGSKLTGLKPFWSRSGTQ-GNKWIQGLVTLHAGQPFNTVFEATVGTSYQGDIAIDDIS---------------------VSDGKCVQPSTTCTFEND-------------------------------ACGYTND-KADFNWARNSKNTNSFGTGPKTDHTLQSASGFYLYTEASGRKFRDTARILSPIEKPTT--ASCLQFWYHMYGT-GMGTLSVLKKDSRGLSRTPLWRESGNQGDQWRVASVTISSRSDFQIAFEGVIGRNYQSDIAIDDVKYTS-----GACP-SPGYCDFENGLCTY 3281
H G+ N P DHT TT G+Y+Y ++SN I+ L L FW HM G G+L+V + TS +++ TGQQG W + E + + +++F Y GD+A+DDI D P P G+C F+ C+W + ++FDW + + ++ T P+AD G+ +G Y+F++S P++ R+ S V ++ S N + IF+YHM G IG+L + V+ + ++ L+ +GN W ++++ +++ EG G GDIA+DD + S+ +P+ P + T G +C FE G C W D +W LG G S P DHTL N G + +LE + G K + + + + AA +SFWY + G++ I + GL W S GN W + + L + F +F+ G AIDDI D KC+ C ++ D AC T D + D +WA S+ + P +DHT S F LY +SG K ARI + P + ++FW++M MG L V + GL+ +W GN+ W SV +SS S F++AFE + N IA+DD+ +T G P P C+ + C Y
Sbjct: 1126 HHGE---ENHRPSVDHTQNTTDGWYLYADSSNGKFGDTADILTPIISLTGPKCTLVFWTHMNGATVGSLQVLIKKDNVTSKLWAQTGQQGAQWKRAEVFLGIRSHTQIVFRAKRGISYIGDVAVDDISFQDCSPLLSPERKCTDHEFMCANKHCIAKDKLCDFVNDCADNSDETTFICRTSSGRCDFEFDLCSW---KQEKDEDFDWNLKASSIPAAGTEPAADHTLGNSSGHYIFIKSLFPQQPMRAARISSPVISKRSKNCK-IIFHYHMYGNGIGALTLMQVSVTNQTKVLLNLTVEQGNFWRREELSL-FGDEDFQLKFEGRVGKGQRGDIALDDIVLTENCLSLHDSVQEELAVPLPTGFCPLGYRECHNGKCYRLEQSCNFVDNCGDNTDENECGSSCTFEKGWC-GWQNSQADNFDWVLGVGSHQSLR--PPKDHTLGNENGHFMYLEATAVGLRGDKAHFRSTMWRESSAACT------MSFWYFVSAKATGSIQILIKTEK---GLSKVWQESKQNPGNHWQKADILLGKLRNFEVIFQGIRTRDLGGGAAIDDIEFKNCTTVGEISELCPEITDFLCRDKKCIASHLLCDYKPDCSDRSDEAHCAHYTSTTGSCNFETSSGNWTTACSLTQDSEDDLDWAIGSR-IPAKALIPDSDHTPGSGQHF-LYVNSSGSKEGSVARITTSKSFPASLGMCTVRFWFYMIDPRSMGILKVYTIEESGLN-ILVWSVIGNKRTGWTYGSVPLSSNSPFKVAFEADLDGNEDIFIALDDISFTPECVTGGPVPVQPSPCEADQFSCIY 1912 HSP 4 Score: 163.31 bits (412), Expect = 2.337e-40 Identity = 198/867 (22.84%), Postives = 328/867 (37.83%), Query Frame = 3
Query: 1212 FQKDMCGFTQDKSDNFDWRRHRGQTSSSNTGPKADHXXXXXXXXXXXXXXXNT-GVNQRGRIMKDYTGLKKGGSC-LTFWYHMFGIHQGTLKVYTNATSTSPIFSV---TGQQGNLWVKGEATITSTSA-KVIFEGITSWGYAGD--MALDDIQVLDGPCP------------------------------------IPGQCSFQNGWCTWYNIPNSQGDNFDWI-IXXXXXXXXXXXPSADRFGSKTGKYVFLESS---SPRRTGDKTRLVSEVFNQTSSNGQCFIFYYHMLGTSIGSLNIYVNASGTENLVWTLSGNKGNKWLNGQVNVGRARGSYKIIIEGVRGTSYTGDIAIDDF-------TFKKGSCSIVPSDALPGQXXXXXX--------XXXXXXXXXXXXXGFNCNFETGICSNWYQDTTDQLNWSLGQGQTSSFGTGPKTDHTLKNAYGKYAFLEVSGQKKNATARLVSQKMAATNANAGKC-LSFWYHMYGPHIGTLNIYVAVGSKLTG-LKPFWSRSGTQGNKWIQGLVTL--HAGQ---PFNTVFEATVGTSYQGDIAIDDISVSDGKCVQ----PSTT-------CTFENDACGYTNDKA--DFNWARNSKNTNSFG---TGPKTDHTLQSASGFYLYTEASGRKFRDTARILSPIEKPTTASC-LQFWYHMYGTGMGTLSVLKKDSRGLSRTPLWRESGNQGDQWRVASVTISSRSD-FQIAFEGVIGRNYQSDIAIDDVKYTSGACPSPG-------------------------------------------YCDFENGLCTYINSKKDDFDWIVGSAGTASFFTGPKFDHTTGSKNGSYVFLESSNPR 3419
F+ +C TQD+S W + G S P DH ++ + V ++ + R R+ + C +TF+Y + G L V PI + T N W + I S+ +V+FEG + Y D +A+DDI G P + C F+ C W + + W+ + + + P D+ G G YV++ + + + L S V + + C + +Y+ + +S+ + +Y N E + WT + + ++W+ V + ++KII EG S IA+D T + CS GQ + + + C+FE+G C W T+ +W L +G + P DHT +G + +LE Q+ A+L S + + C + FWYH+ N+ V + L G L+ ++W + L AG+ PF + EATV +S +A+DDISVS + P T+ C FE ++C + + F+W R+S++ S P DH+L ++ G +++ A++ SP T C L FW++ YG +G + T +WR NQG QW A++ + S F ++ + V Y AIDD+++ + P P C+FE G+C + KDDFDW T + TGP D+T G+ G Y+++ESS P+
Sbjct: 75 FEDGLCHMTQDQSLQPSWTKRSGMIGLS--PPFYDHNGDVSAHFLSLVSRVDSISSSLRSRV---FLPTNDQHDCQITFYYFSCQV-SGKLMVGLQTACGGPIQHLWQNTAALPNQWERNVIKIQSSQRFQVVFEGQMASTYEQDEVIAIDDISFSSGCLPANDGILLCQEALNAERELCHPDTDLCRFDATDEELRLCQACGFEFDMCEWTS--EASAGQISWMRTKAREIPAFESTPQQDQGGDDEGYYVWVGAKHGFTLNHLDSRAYLNSSVCHCLGKS--CHLQFYYAMESSVLRVRLYNNKE--EEIFWTYNISTHSQWVKADVLIPEDLKTFKIIFEGTL-LSQRSFIALDHLWVYACGQTQSRKLCSADEFPCTSGQCIAKESVCDSRQDCSDESDEDPATCSKHLTCDFESGFC-GWEPFLTEDSHWKLMKGLNNGEHHFPAADHTANINHGSFIYLE--AQRSPGVAKLGSPVLTKLLTASTPCQVQFWYHLSQHS----NLSVFTRTSLDGNLQKQGKIIRFSESQWSHAKIDLIAEAGESTLPFQLILEATVLSS-NATVALDDISVSQECEISYKSLPRTSTQSKFSKCDFEANSCDWFEAISGDHFDWIRSSQSELSADFEHQAPPRDHSLNASQGHFMFILKKSSSLWQVAKLQSPTFSQTGPGCILSFWFYNYGLSVGAAELQLHMENSHDSTVIWRVLYNQGKQWLEATIQLGRLSQPFHLSLDKVSLGIYDGVSAIDDIRFENCTLPLPAESCEGLDHFWCRHTRACIEKLRLCDLVDDCGDRTDEVNCAPELQCNFETGICNWEQDAKDDFDWTRSQGPTPTLNTGPMKDNTLGTAKGHYLYIESSEPQ 920 The following BLAST results are available for this feature:
BLAST of TCONS_00010478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.