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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010386 ID=TCONS_00010386|Name=TCONS_00010386|organism=Clytia hemisphaerica|type=transcript|length=1295bpRun BLAST on NCBI protein sequence of TCONS_00010386-protein >TCONS_00010386-protein ID=TCONS_00010386-protein|Name=TCONS_00010386-protein|organism=Clytia hemisphaerica|type=polypeptide|length=342bp FRMALWGKGDPRWIVEERPDSTNVNNWHWTERDATAWSKDKLKKLFMSVKRun BLAST on NCBI transcript from alignment at sc0000106:27215..36774+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010386 ID=TCONS_00010386|Name=TCONS_00010386|organism=Clytia hemisphaerica|type=transcript|length=9560bp|location=Sequence derived from alignment at sc0000106:27215..36774+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000106:27215..36774+ >TCONS_00010386 ID=TCONS_00010386|Name=TCONS_00010386|organism=Clytia hemisphaerica|type=CDS|length=13377bp|location=Sequence derived from alignment at sc0000106:27215..36774+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010386 vs. Swiss-Prot (Human)
Match: AHSA1 (Activator of 90 kDa heat shock protein ATPase homolog 1 OS=Homo sapiens GN=AHSA1 PE=1 SV=1) HSP 1 Score: 302.368 bits (773), Expect = 1.022e-98 Identity = 153/346 (44.22%), Postives = 220/346 (63.58%), Query Frame = 1
Query: 7 MALWGKGDPRWIVEERPDSTNVNNWHWTERDATAWSKDKLKKLFMSVKEETGEGSWQIDEVKDVTGEATINNRKGKLIFFYEWELKFAYKGQLNGSEVDYKGTISIPNLSDENTADEIDVVVAAKGDSKNADKLKHMIRENGIKMCQDKCAEYIDALRAEYTKGMVLPTKDASNINAAPTGT------KEAAKQFKVSDQMKNLNVNKEKKTDGVTITVSEEFKTRSEVIYHTLTQSERLCMFTRSTCTSEPKVGGEFSLMNGNITGKYIQLDVGKKIVQQWRFKEWSEGLFSTVTIELEEKSGDTLLKLTQTGVPGFDKTRTEQGWKQYFFGPIKQIFGFGASLF 1026
MA WG+GDPRWIVEER D+TNVNNWHWTERDA+ WS DKLK LF++V+ + EG ++ EV + GEA+INNRKGKLIFFYEW +K + G + S V YKG + IPNLSDEN+ DE+++ V+ D + + L +++E G+K+ ++ YI L+ E+T+GM+LPT + +++ P G + AK Q + + V K IT+ E F T E +Y T E + FT + T E GG+F +++GN++G++ L K IV +WRFK W EG F+T+T+ +K+G+T L + G+P ++ RT QGW++Y+F IKQ FG+GA LF
Sbjct: 1 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVQVQNEEGKCEVTEVSKLDGEASINNRKGKLIFFYEWSVKLNWTGT-SKSGVQYKGHVEIPNLSDENSVDEVEISVSLAKDEPDTN-LVALMKEEGVKLLREAMGIYISTLKTEFTQGMILPTMNGESVD--PVGQPALKTEERKAKPAPSKTQARPVGV----KIPTCKITLKETFLTSPEELYRVFTTQELVQAFTHAPATLEADRGGKFHMVDGNVSGEFTDLVPEKHIVMKWRFKSWPEGHFATITLTFIDKNGETELCMEGRGIPAPEEERTRQGWQRYYFEGIKQTFGYGARLF 338 The following BLAST results are available for this feature:
BLAST of TCONS_00010386 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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