TCONS_00010349 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010349
Unique NameTCONS_00010349
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length439

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010349 ID=TCONS_00010349|Name=TCONS_00010349|organism=Clytia hemisphaerica|type=transcript|length=439bp
ACGGAACATAATAGATAAGATATTGCTATCGTTGGCTGTATGCGATGCTC
TAGTATCGTTTACCATATTCTCTGTCTTCGCCTGGCTCAACTACTGGGAA
TGGAACTCTATTGGATACAAGTCAATATTCGTGTCTTGGACGCTTTCCAT
GTCCTCTACATCTTCATTGACCATCATATTGCTTGCTGTCATCAAATACA
TTAAGATATCCAGATTCTCGACATTTGACGCCATCATTACACGGCCACGG
CTCCAGTACTTCATTATCTTAACGTGGTGTGCCTGTANTTACACGGCCAC
GGCTCCAGTTCTTCATTATCTTAACGTGGATTGTGCCTGTAACGATCATT
GTACCGTATTCAATAGTTGAGTCATATTCTGTGGTGTATTTTGCATCTTT
CACGTTAACATTGATAACTCTCATTTTATTACCACTCTT
Run BLAST on NCBI

protein sequence of TCONS_00010349-protein

>TCONS_00010349-protein ID=TCONS_00010349-protein|Name=TCONS_00010349-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
RNIIDKILLSLAVCDALVSFTIFSVFAWLNYWEWNSIGYKSIFVSWTLSM
SSTSSLTIILLAVIKYIKISRFSTFDAIITRPRLQYFIILTWCACXYTAT
APVLHYLNVDCACNDHCTVFNS
Run BLAST on NCBI

transcript from alignment at sc0000104:207372..207810

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010349 ID=TCONS_00010349|Name=TCONS_00010349|organism=Clytia hemisphaerica|type=transcript|length=439bp|location=Sequence derived from alignment at sc0000104:207372..207810 (Clytia hemisphaerica)
AAGAGTGGTAATAAAATGAGAGTTATCAATGTTAACGTGAAAGATGCAAA
ATACACCACAGAATATGACTCAACTATTGAATACGGTACAATGATCGTTA
CAGGCACAATCCACGTTAAGATAATGAAGAACTGGAGCCGTGGCCGTGTA
ANTACAGGCACACCACGTTAAGATAATGAAGTACTGGAGCCGTGGCCGTG
TAATGATGGCGTCAAATGTCGAGAATCTGGATATCTTAATGTATTTGATG
ACAGCAAGCAATATGATGGTCAATGAAGATGTAGAGGACATGGAAAGCGT
CCAAGACACGAATATTGACTTGTATCCAATAGAGTTCCATTCCCAGTAGT
TGAGCCAGGCGAAGACAGAGAATATGGTAAACGATACTAGAGCATCGCAT
ACAGCCAACGATAGCAATATCTTATCTATTATGTTCCGT

Coding sequence (CDS) from alignment at sc0000104:207372..207810

>TCONS_00010349 ID=TCONS_00010349|Name=TCONS_00010349|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at sc0000104:207372..207810 (Clytia hemisphaerica)
TCAACTATTGAATACGGTACAATGATCGTTACAGGCACAATCCACGTTAA
GATAATGAAGAACTGGAGCCGTGGCCGTGTAANTACAGGCACACCACGTT
AAGATAATGAAGTACTGGAGCCGTGGCCGTGTAATGATGGCGTCAAATGT
CGAGAATCTGGATATCTTAATGTATTTGATGACAGCAAGCAATATGATGG
TCAATGAAGATGTAGAGGACATGGAAAGCGTCCAAGACACGAATATTGAC
TTGTATCCAATAGAGTTCCATTCCCAGTAGTTGAGCCAGGCGAAGACAGA
GAATATGGTAAACGATACTAGAGCATCGCATACAGCCAACGATAGCAATA
TCTTATCTATTATGTTCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005808XLOC_005808Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010349-proteinTCONS_00010349-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010349-exon-sc0000104-1491911889:207372..207810TCONS_00010349-exon-sc0000104-1491911889:207372..207810Clytia hemisphaericaexon
TCONS_00010349-exon-sc0000104-1510915933:207372..207810TCONS_00010349-exon-sc0000104-1510915933:207372..207810Clytia hemisphaericaexon
TCONS_00010349-exon-sc0000104-1575043694:207372..207810TCONS_00010349-exon-sc0000104-1575043694:207372..207810Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:207372..207810 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.925506	1.50419	2.61976	1.36695	1.87215	0.821886	0.99157	1.29961	0.129984	1.93208	0.468831	0.410921	0.512938	0.213076	0.525533	0.75197	1.85273	1.42424	0.491917	0.514756	0.596555	0.872935	0.530584	0.321585	0	0.147805	0.211509	0.451456	0.856033	0.348865
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010349 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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