TCONS_00010340 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010340
Unique NameTCONS_00010340
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length313

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010340 ID=TCONS_00010340|Name=TCONS_00010340|organism=Clytia hemisphaerica|type=transcript|length=313bp
CCCACAACCATTCGTCAAGCTGTCAATCAGAGTGGAGGATCAGGACTATG
TAGACCTTGGGTTCAAGCCTATCATCAACAATCCAGAATCATCAATCAAA
GTACCTGCAATGGCTGATACCGGCTGTCAGAGTTGCCTAGCTGGATTCAA
GATCGTTCAACAACTCGGTCTGACGAAAAATGACCTcattccagtgaaaa
tgaagatgCATGCCACGAACGACAGACCTATTAGCATCCTTGGTGCCATC
ATCCTTCGTATCTCTGGCGTCGATCAGAACAACAACATGACCGAGACAAG
GCAGATGACCTAC
Run BLAST on NCBI

protein sequence of TCONS_00010340-protein

>TCONS_00010340-protein ID=TCONS_00010340-protein|Name=TCONS_00010340-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
PQPFVKLSIRVEDQDYVDLGFKPIINNPESSIKVPAMADTGCQSCLAGFK
IVQQLGLTKNDLIPVKMKMHATNDRPISILGAIILRISGVDQNNNMTETR
QMTY
Run BLAST on NCBI

transcript from alignment at sc0000104:16207..16519

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010340 ID=TCONS_00010340|Name=TCONS_00010340|organism=Clytia hemisphaerica|type=transcript|length=313bp|location=Sequence derived from alignment at sc0000104:16207..16519 (Clytia hemisphaerica)
GTAGGTCATCTGCCTTGTCTCGGTCATGTTGTTGTTCTGATCGACGCCAG
AGATACGAAGGATGATGGCACCAAGGATGCTAATAGGTCTGTCGTTCGTG
GCATGcatcttcattttcactggaatgAGGTCATTTTTCGTCAGACCGAG
TTGTTGAACGATCTTGAATCCAGCTAGGCAACTCTGACAGCCGGTATCAG
CCATTGCAGGTACTTTGATTGATGATTCTGGATTGTTGATGATAGGCTTG
AACCCAAGGTCTACATAGTCCTGATCCTCCACTCTGATTGACAGCTTGAC
GAATGGTTGTGGG

Coding sequence (CDS) from alignment at sc0000104:16207..16519

>TCONS_00010340 ID=TCONS_00010340|Name=TCONS_00010340|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0000104:16207..16519 (Clytia hemisphaerica)
GTAGGTCATCTGCCTTGTCTCGGTCATGTTGTTGTTCTGATCGACGCCAG
AGATACGAAGGATGATGGCACCAAGGATGCTAATAGGTCTGTCGTTCGTG
GCATGcatcttcattttcactggaatgAGGTCATTTTTCGTCAGACCGAG
TTGTTGAACGATCTTGAATCCAGCTAGGCAACTCTGACAGCCGGTATCAG
CCATTGCAGGTACTTTGATTGATGATTCTGGATTGTTGATGATAGGCTTG
AACCCAAGGTCTACATAGTCCTGATCCTCCACTCTGATTGACAGCTTGAC
GAATGGTTGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005800XLOC_005800Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010340-exon-sc0000104-1491911889:16207..16519TCONS_00010340-exon-sc0000104-1491911889:16207..16519Clytia hemisphaericaexon
TCONS_00010340-exon-sc0000104-1510915933:16207..16519TCONS_00010340-exon-sc0000104-1510915933:16207..16519Clytia hemisphaericaexon
TCONS_00010340-exon-sc0000104-1575043694:16207..16519TCONS_00010340-exon-sc0000104-1575043694:16207..16519Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010340-proteinTCONS_00010340-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:16207..16519 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.878136	0	0.451995	0	0	0	0	0.540326	0.463363	0	0	0.589842	0.319627	1.08887	0.609832	0	0.363019	0.467009	0	0.923579	1.02155	0.482488	0	0	0	0.750958	1.43319	0	0.076564	1.61803
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010340 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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