TCONS_00010332 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010332
Unique NameTCONS_00010332
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1157

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010332 ID=TCONS_00010332|Name=TCONS_00010332|organism=Clytia hemisphaerica|type=transcript|length=1157bp
TGTTATCTCTTTGACAACCTAGTTACTGTGTTTCATTGTGAATACCAATG
TGGTGATAGAATTGACACTATTTATTCTGGAAGCTTTGCTGAAGGTATTA
CCAATCATGGAGATTATGATATTATGTATATCGACAAAAGGTTCATCATT
GTAGAATCAGCTAGTGATATTCCAAAGAATTATAAGGATGGAGTATTGGT
TCTTGATCAAGATTTTTGCCATGCTGGCTATACAAGATTGCTAGTACATC
AGAAATGCGctgacaaaaggtttaatggctatgcaagtttgaatggaaaa
ttatacttGGATCGTATGAAAGCCTTTAACCAAACACAACATATACATGA
TTTTGGGATTGGTATCCCACACGGACCGGCTTTCATGATTACTCCAAAAC
CAGACAATAAAGAAACAGATATGGTGCAATGCTACCAAATGCTATCTAAT
AATGTTGTACAAAAGAGATTTGACAACAAAGAATTTCATCCCAGTTTTCA
GCAACAGAGAATCATATGATTGACCATTACCCACAAGAAGATGCCAAAAA
ACTTGCCTCGAAAATTGACAATGTTCGCAAGGATTTGTTTGGAAAGATAT
TGGCATGTAACTTTCTCAGTATTGAAGAAATGAATGTGTTTATTTCCATC
TATAAAGTACAGGTCAAAATAGGAGATACACAGCTTTTGAATAGTGTCTT
GTGCTCTATCTTAGAAAATGgctttgttgaaaaattcaataatgAGGATA
AAGAAACATGCATTAGTAATAAGTTTTATCAACATGCTCATGTCTACATG
CTTGAATTCTTGAGATCTGCGCTAAATAGGCACCTNCATACCTTACTGGT
AGAAAGTTTGTTGACAAAAAGTGACAAAGAAATCGCATGGTGACAAAAGT
ATTGGCTGgtgaatttattattttattttgtttcatacGCTCTCAGGCCT
TAATTCATCTAAAAACCTGGAGGACAATAAAACTGTTCATTGTTAATTAC
TAGcaacaaaatctttttactGATAATGTTTACtgataattcaattttta
ggtttttttgtAAGTCTGTTATAGTTGGCAAAGTCCGTTAGCTTGTTTTC
ACATTCACACACTTTTATACCTAGACAGGGTAAACTTTAAATATATTTAC
ATAATTC
Run BLAST on NCBI

transcript from alignment at sc0000104:540365..541888-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010332 ID=TCONS_00010332|Name=TCONS_00010332|organism=Clytia hemisphaerica|type=transcript|length=1524bp|location=Sequence derived from alignment at sc0000104:540365..541888- (Clytia hemisphaerica)
TGTTATCTCTTTGACAACCTAGTTACTGTGTTTCATTGTGAATACCAATG
TGGTGATAGAATTGACACTATTTATTCTGGAAGCTTTGCTGAAGGTATTA
CCAATCATGGAGATTATGATATTATGTATATCGACAAAAGGTTCATCATT
GTAGAATCAGCTAGTGATATTCCAAAGAATTATAAGGATGGAGTATTGGT
TCTTGATCAAGATTTTTGCCATGCTGGCTATACAAGATTGCTAGTACATC
AGAAATGCGCTGACAAAAGGTTTAATGGCTATGCAAGTTTGAATGGAAAA
TTATACTTGGATCGTATGAAAGCCTTTAACCAAACACAACATATACATGA
TTTTGGGATTGGTATCCCACACGGACCGGCTTTCATGATTACTCCAAAAC
CAGACAATAAAGAAACAGATATGGTGCAATGCTACCAAATGCTATCTAAT
AATGTTGTACAAAAGAGATTTGACAACAAAGAATTTCATCCCAGTTTTCA
GCAACAGGTTCCTATGATTCTTAATAGTGATTGCCATGTTGTTCCTGTAG
CCCATGCCCAAAGTGAGAACCCTGATATAGAGTTCAGGTTTTCTTTCTCA
CTCATAGAAAAACAATTGATTCAAAAGTGGGGTATTATACAATTCAAATG
CTATTTCTTGTGTAAAGAACTGTTCAAAAACCATTTGCAAGGGGATAACG
AAAATGAGAAGGGCCTCTGCTCCTATTTTGCTAAGACTATTATTTTCTGG
ATGAACGAGAAGAATCCAATAGGTTTTTGGGAGAAACACACTACAATTGA
ACTAGTAGATGAGATATTAGAAACCATGAAAGTATATCTTTTAAAAAAGT
GCTGCCCTAATTATTTCATACCAGAGAATCATATGATTGACCATTACCCA
CAAGAAGATGCCAAAAAACTTGCCTCGAAAATTGACAATGTTCGCAAGGA
TTTGTTTGGAAAGATATTGGCATGTAACTTTCTCAGTATTGAAGAAATGA
ATGTGTTTATTTCCATCTATAAAGTACAGGTCAAAATAGGAGATACACAG
CTTTTGAATAGTGTCTTGTGCTCTATCTTAGAAAATGGCTTTGTTGAAAA
ATTCAATAATGAGGATAAAGAAACATGCATTAGTAATAAGTTTTATCAAC
ATGCTCATGTCTACATGCTTGAATTCTTGAGATCTGCGCTAAATAGGCAC
CTNCATACCTTACTGGTAGAAAGTTTGTTGACAAAAAGTGACAAAGAAAT
CGCATGGTGACAAAAGTATTGGCTGGTGAATTTATTATTTTATTTTGTTT
CATACGCTCTCAGGCCTTAATTCATCTAAAAACCTGGAGGACAATAAAAC
TGTTCATTGTTAATTACTAGCAACAAAATCTTTTTACTGATAATGTTTAC
TGATAATTCAATTTTTAGGTTTTTTTGTAAGTCTGTTATAGTTGGCAAAG
TCCGTTAGCTTGTTTTCACATTCACACACTTTTATACCTAGACAGGGTAA
ACTTTAAATATATTTACATAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005795XLOC_005795Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010332-exon-sc0000104-1575043694:541382..541888TCONS_00010332-exon-sc0000104-1575043694:541382..541888Clytia hemisphaericaexon
TCONS_00010332-exon-sc0000104-1575043694:540365..541014TCONS_00010332-exon-sc0000104-1575043694:540365..541014Clytia hemisphaericaexon
TCONS_00010332-exon-sc0000104-1510915933:541382..541888TCONS_00010332-exon-sc0000104-1510915933:541382..541888Clytia hemisphaericaexon
TCONS_00010332-exon-sc0000104-1510915933:540365..541014TCONS_00010332-exon-sc0000104-1510915933:540365..541014Clytia hemisphaericaexon
TCONS_00010332-exon-sc0000104-1491911889:541382..541888TCONS_00010332-exon-sc0000104-1491911889:541382..541888Clytia hemisphaericaexon
TCONS_00010332-exon-sc0000104-1491911889:540365..541014TCONS_00010332-exon-sc0000104-1491911889:540365..541014Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:540365..541888 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.315064	0	0	0.0595106	0.202246	4.60937e-07	0	0	0	0	0	0.0997639	0	0	0	0.441357	0	0	0	0	0.760416	0.17784	0	0	0	0.205328	0.223359	0	0.10499	0.00981772
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010332 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top