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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010324 ID=TCONS_00010324|Name=TCONS_00010324|organism=Clytia hemisphaerica|type=transcript|length=4771bpRun BLAST on NCBI protein sequence of TCONS_00010324-protein >TCONS_00010324-protein ID=TCONS_00010324-protein|Name=TCONS_00010324-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp MAQSGEAPKPNFCQRFSAQCSSFGKFLYNGETGEVMGRSGNSWAKIGFFYRun BLAST on NCBI transcript from alignment at sc0000104:470458..522051- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010324 ID=TCONS_00010324|Name=TCONS_00010324|organism=Clytia hemisphaerica|type=transcript|length=51594bp|location=Sequence derived from alignment at sc0000104:470458..522051- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000104:470458..522051- >TCONS_00010324 ID=TCONS_00010324|Name=TCONS_00010324|organism=Clytia hemisphaerica|type=CDS|length=4986bp|location=Sequence derived from alignment at sc0000104:470458..522051- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010324 vs. Swiss-Prot (Human)
Match: AT1B2 (Sodium/potassium-transporting ATPase subunit beta-2 OS=Homo sapiens GN=ATP1B2 PE=1 SV=3) HSP 1 Score: 83.5741 bits (205), Expect = 5.777e-17 Identity = 76/262 (29.01%), Postives = 116/262 (44.27%), Query Frame = 3
Query: 2562 KFLYNGETGEVMGRSGNSWAKIGFFYLVFYGFLAGFFSAMLAVFMTTIEKPEDGGRPKLTQFIANKPGITTLGKLSLLDGYDANSTTSDYAEGIQKY--FEEMKNNSLYKGECPIGR-NETFEKP-----------CYAPSSIYGDCAPEADLSTSMFGVKDEKPCVFIRINRVREWVPEETGKYLKLECSGTGFSKQWPEG-FLM---NG------FPYMGG----NYELPWVAVQLDATVKGLKVR--CELKGKGISVSD 3257
+F++N T + MGR+G SWA I FYLVFYGFL F+ + V + T+ PK +A PG+ K LD S T + + +QK F E N+S+ + + R +E+P C + G+C+ D ++ +G +PCVFI++NRV + + + + C+G G F+M NG FPY G NY P VAV+ ++V C + I+ D
Sbjct: 19 EFVWNPRTHQFMGRTGTSWAFILLFYLVFYGFLTAMFTLTMWVMLQTVS----DHTPKYQDRLAT-PGLMIRPKTENLDVIVNVSDTESWDQHVQKLNKFLEPYNDSIQAQKNDVCRPGRYYEQPDNGVLNYPKRACQFNRTQLGNCSGIGD--STHYGYSTGQPCVFIKMNRVINFYA-GANQSMNVTCAGKRDEDAENLGNFVMFPANGNIDLMYFPYYGKKFHVNYTQPLVAVKFLNVTPNVEVNVECRINAANIATDD 272 The following BLAST results are available for this feature:
BLAST of TCONS_00010324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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