TCONS_00010306 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010306
Unique NameTCONS_00010306
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length368

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010306 ID=TCONS_00010306|Name=TCONS_00010306|organism=Clytia hemisphaerica|type=transcript|length=368bp
ACCTCCCTTATCTCATAAAGGATTGCCTATTCTGTCAGCACCTCGTTTTg
ttagagaaaaaaataaacaaactgcACCACAGCATTTGCCAGAACTAAAG
TTCGATTGTTTTGATCATTCGCAAGATTATCTTGTGTTTGGATTGTTTCT
TTGGTTTCCCAATCAATAAATTCATCCACATCTGGATAAAACTTGACCTT
GGTATCGCAAGGCGAGAGATTGATTGTTTCTTGTTTCGTCTGCGttgaaa
tgaatatttttgccCTTAGTGGAGCGGATTTTGCTCAACCATAAGTAGTA
TAAAAAAGCTCTGAAATTTTGCTCACATACGCTCAATATAGCAAAGGGAA
CAAATTGGAAGAGACACC
Run BLAST on NCBI

transcript from alignment at sc0000104:194227..194647-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010306 ID=TCONS_00010306|Name=TCONS_00010306|organism=Clytia hemisphaerica|type=transcript|length=421bp|location=Sequence derived from alignment at sc0000104:194227..194647- (Clytia hemisphaerica)
ACCTCCCTTATCTCATAAAGGATTGCCTATTCTGTCAGCACCTCGTTTTG
TTAGAGAAAAAAATAAACAAACTGCACCACAGCATTTGCCAGAACTAAAG
TTCGATTGTTTTGATCATTCGCAAGATTATCTTGTGTTTGGATTGTTTCT
TTGGTTTCCCAATCAATAAATTCATCCACATCTGGATAAAACTTGACCTT
GGTATCGCAAGGCGAGAGATTGATTGTTTCTTGTTTCGTCTGCGTTGAAA
TGAATATTTTTGCCCTTAGTGGAGCGGATTTTGCTCAACCATAAGTAGTA
TAAAAAAGCTCTGAAATTTTGCTCACATACGCTCAATATAGCAAAGGAAA
CAAATTNAAAGCTCTGAAATTTTGCTCACATACGCTCAATATAGCAAAGG
GAACAAATTGGAAGAGACACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005786XLOC_005786Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010306-exon-sc0000104-1575043694:194322..194647TCONS_00010306-exon-sc0000104-1575043694:194322..194647Clytia hemisphaericaexon
TCONS_00010306-exon-sc0000104-1575043694:194227..194268TCONS_00010306-exon-sc0000104-1575043694:194227..194268Clytia hemisphaericaexon
TCONS_00010306-exon-sc0000104-1510915933:194322..194647TCONS_00010306-exon-sc0000104-1510915933:194322..194647Clytia hemisphaericaexon
TCONS_00010306-exon-sc0000104-1510915933:194227..194268TCONS_00010306-exon-sc0000104-1510915933:194227..194268Clytia hemisphaericaexon
TCONS_00010306-exon-sc0000104-1491911889:194322..194647TCONS_00010306-exon-sc0000104-1491911889:194322..194647Clytia hemisphaericaexon
TCONS_00010306-exon-sc0000104-1491911889:194227..194268TCONS_00010306-exon-sc0000104-1491911889:194227..194268Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:194227..194647 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.446261	1.08794	1.76848	1.97735	3.91175	2.14	0.573739	2.41707	1.69225	0.698708	0.904244	0.594415	0.296794	0	0.506803	0.135969	0.167503	1.03011	0.711578	0.49641	0.43147	0.315684	0.511674	0.232593	0.239565	0.855225	0	0.326525	0.247657	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010306 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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