|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010296 ID=TCONS_00010296|Name=TCONS_00010296|organism=Clytia hemisphaerica|type=transcript|length=1950bpRun BLAST on NCBI protein sequence of TCONS_00010296-protein >TCONS_00010296-protein ID=TCONS_00010296-protein|Name=TCONS_00010296-protein|organism=Clytia hemisphaerica|type=polypeptide|length=355bp LYSIFYRYKKLKIKIYKMAGIGPQLPPHLMKKNTENVKDEKSQKEYVGPARun BLAST on NCBI transcript from alignment at sc0000104:133809..153412- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010296 ID=TCONS_00010296|Name=TCONS_00010296|organism=Clytia hemisphaerica|type=transcript|length=19604bp|location=Sequence derived from alignment at sc0000104:133809..153412- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000104:133809..153412- >TCONS_00010296 ID=TCONS_00010296|Name=TCONS_00010296|organism=Clytia hemisphaerica|type=CDS|length=9612bp|location=Sequence derived from alignment at sc0000104:133809..153412- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00010296 vs. Swiss-Prot (Human)
Match: GPAM1 (GPALPP motifs-containing protein 1 OS=Homo sapiens GN=GPALPP1 PE=1 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 3.526e-35 Identity = 122/368 (33.15%), Postives = 177/368 (48.10%), Query Frame = 1
Query: 61 IGPQLPPHLMKKNTENVKDEKSQKEYVGPALPPHLK----------------------KSKESSIGPSQPSSVQNDTQS-------IGPLLPPHLRKSQERNDDDDDSPLGPASPLNVQSTRESKSYGPALPPGMGKRPDASLNANNKSETSXXXXXXXXXXXXIVGPLLPXXXXXXXXXXXXXXXXXRASAMRNKLT-GKAEGDGPAQRENWMLELPPEFSKNFGMGPRTFRSKAVDC-GDRSVWTDTPADKERKRMERQQAAMAGEKRKQEKAPAKVPTKEELEMQSRVQQYNTATRPQSLLEMHQTKKKKTDEESGDK--VRRPFDRERDLNLRQKDPKATQKFIKDAKGFGSKFSTGSYENKFL 1065
IGP LPP + T +E+ GPALPP+ K +S+E GP+ +N GP LPP +K DDSP P GPALPPG K ++ ++ + D +D++I+GP+ A+ +V EFE+RA M+ KLT G + P RE+WM ELPPE K+FG+GPRTF+ +A D GDRS+WTDTPAD+ERK E Q+A + K+ +E + + + + +V YN + R +SL+++H K K E +K R PFDR++DL + + D + IK ++ ++FS G N FL
Sbjct: 6 IGPALPPGFKARGTAE-DEERDPSPVAGPALPPNYKSSSSDSSDSDEDSSSLYEEGNQESEEDDSGPTARKQRKNQDDDDDDDDGFFGPALPPGFKKQ-------DDSPPRPI-------------IGPALPPGFIK---STQKSDKGRDDPGQQETDSSEDEDIIGPM---PAKGPVNYNVTTEFEKRAQRMKEKLTKGDDDSSKPIVRESWMTELPPEM-KDFGLGPRTFKRRADDTSGDRSIWTDTPADRERKAKETQEARKSSSKKDEE----HILSGRDKRLAEQVSSYNESKRSESLMDIHHKKLKSKAAEDKNKPQERIPFDRDKDLKVNRFDEAQKKALIKKSRELNTRFSHGKG-NMFL 340 The following BLAST results are available for this feature:
BLAST of TCONS_00010296 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.