TCONS_00010296-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00010296-protein
Unique Name	TCONS_00010296-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	355

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00010296-protein ID=TCONS_00010296-protein|Name=TCONS_00010296-protein|organism=Clytia hemisphaerica|type=polypeptide|length=355bp
LYSIFYRYKKLKIKIYKMAGIGPQLPPHLMKKNTENVKDEKSQKEYVGPA
LPPHLKKSKESSIGPSQPSSVQNDTQSIGPLLPPHLRKSQERNDDDDDSP
LGPASPLNVQSTRESKSYGPALPPGMGKRPDASLNANNKSETSEDDGYDD
EDDDEIVGPLLPSFAEEASAKSVAEEFEERASAMRNKLTGKAEGDGPAQR
ENWMLELPPEFSKNFGMGPRTFRSKAVDCGDRSVWTDTPADKERKRMERQ
QAAMAGEKRKQEKAPAKVPTKEELEMQSRVQQYNTATRPQSLLEMHQTKK
KKTDEESGDKVRRPFDRERDLNLRQKDPKATQKFIKDAKGFGSKFSTGSY
ENKFL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_005782	XLOC_005782	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00010296	TCONS_00010296	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022226	DUF3752

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 240..260
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 231..335
IPR022226	Protein of unknown function DUF3752	PFAM	PF12572	DUF3752	coord: 216..346 e-value: 3.2E-26 score: 92.6

Blast

[Close]

BLAST of TCONS_00010296-protein vs. Swiss-Prot (Human)
Match: GPAM1 (GPALPP motifs-containing protein 1 OS=Homo sapiens GN=GPALPP1 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.114e-44
Identity = 126/368 (34.24%), Postives = 175/368 (47.55%), Query Frame = 0

Query:   21 IGPQLPPHLMKKNTENVKDEKSQKEYVGPALPPHLK----------------------KSKESSIGPSQPSSVQNDTQS-------IGPLLPPHLRKSQERNDDDDDSPLGPASPLNVQSTRESKSYGPALPPGMGKRPDASLNANNKSETSEDDGYDDEDDDEIVGPLLPSFAEEASAKSVAEEFEERASAMRNKLT-GKAEGDGPAQRENWMLELPPEFSKNFGMGPRTFRSKAVDC-GDRSVWTDTPADKERKRMERQQAAMAGEKRKQEKAPAKVPTKEELEMQSRVQQYNTATRPQSLLEMHQTKKKKTDEESGDK--VRRPFDRERDLNLRQKDPKATQKFIKDAKGFGSKFSTGSYENKFL 355
            IGP LPP    + T    +E+      GPALPP+ K                      +S+E   GP+     +N            GP LPP  +K        DDSP  P               GPALPPG  K    S    +     E D  +DED   I+GP+    A+     +V  EFE+RA  M+ KLT G  +   P  RE+WM ELPPE  K+FG+GPRTF+ +A D  GDRS+WTDTPAD+ERK  E Q+A  +  K+ +E     + +  +  +  +V  YN + R +SL+++H  K K    E  +K   R PFDR++DL + + D    +  IK ++   ++FS G   N FL
Sbjct:    6 IGPALPPGFKARGTAE-DEERDPSPVAGPALPPNYKSSSSDSSDSDEDSSSLYEEGNQESEEDDSGPTARKQRKNQDDDDDDDDGFFGPALPPGFKKQ-------DDSPPRPI-------------IGPALPPGFIKSTQKSDKGRDDPGQQETDSSEDED---IIGPMP---AKGPVNYNVTTEFEKRAQRMKEKLTKGDDDSSKPIVRESWMTELPPEM-KDFGLGPRTFKRRADDTSGDRSIWTDTPADRERKAKETQEARKSSSKKDEE----HILSGRDKRLAEQVSSYNESKRSESLMDIHHKKLKSKAAEDKNKPQERIPFDRDKDLKVNRFDEAQKKALIKKSRELNTRFSHGKG-NMFL 340

The following BLAST results are available for this feature:

BLAST of TCONS_00010296-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00010296-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GPAM1	1.114e-44	34.24	GPALPP motifs-containing protein 1 OS=Homo sapiens...	[more]

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TCONS_00010296-protein (polypeptide) - C. hemisphaerica