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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010290 ID=TCONS_00010290|Name=TCONS_00010290|organism=Clytia hemisphaerica|type=transcript|length=3976bpRun BLAST on NCBI transcript from alignment at sc0000104:102206..117715- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010290 ID=TCONS_00010290|Name=TCONS_00010290|organism=Clytia hemisphaerica|type=transcript|length=15510bp|location=Sequence derived from alignment at sc0000104:102206..117715- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00010290 vs. Swiss-Prot (Human)
Match: GCYB1 (Guanylate cyclase soluble subunit beta-1 OS=Homo sapiens GN=GUCY1B3 PE=1 SV=1) HSP 1 Score: 430.639 bits (1106), Expect = 8.097e-135 Identity = 243/623 (39.00%), Postives = 363/623 (58.27%), Query Frame = 1
Query: 172 MYGYFNHAFEMFITHKYGKTEWAIIRDMASVFHD-HFDDELNYDENMIYEIMDAACDHLDIDIQDLQEEFGEMYFTHCLQSEHGKFLKKLGGNLFDFFSNIDGLHDYLNRSYADAKIPSFRVERIGDSK-MTVTYFSDRDDLESIIPGIIRKAAKMLFNLDVETTREMMPYKTIMVYTSSPE-TAILMFPKEP----LYP---RTIIPKANEPKVSPIEFAKICPFHIVFDDQMRFVELGAALSRILNVYSNKGERVTNYFTITRPQVEFDFDMIKLRLNNSFVLTTIT--------RTDEPRANKPRSNLRLKGQMILLEKKKMMLFLCSPNVTCIEDMTNKGLCLSDIPIHDATRDLVLLSENIQKELKLTQQLGIVSDHLKKIHSELHEESELYNRLLYAVLPNSIAKNLGEGNSVRPEKFECVTLMFSGIVDFSSFCQNY----DAKLIVDMLNDLYIRFDDLIRMMNCNGDEWVYKVETIGDKYMTASGVPDRTINNPTIMCSLALDMHDASQEVTMDGKPVEVTFGIHSGEVVAGVIGKKMPRYCLFGNSVNLASRTETTGLPGKINVTEYTYKLINFEDKNNPDYEKIKNFSFKKREPIKMKGKTEPMLTFTLSRR 1974
MYG+ NHA E+ + YG W I+ A + + F + YD++ Y+++ AA L+++ ++ + FG+M+F C +S + L+ LG N+ +F N+D LHD+L Y + PSFR K + + Y+S+R+ L+ I+ GII+ A+ + +++ K I + T L+ KE Y R E ++SP F K PFHI+FD + + G A+ R+L + + F++ RP ++ F I +N FVL + ++ S LRLKGQMI L + +LFLCSP+V ++D+T +GL LSDIP+HDATRDLVLL E ++E KLTQ+L I++D L+ L +E + + LLY+VLP S+A L V ++++ VT++FSGIV F++FC + A IV++LNDLY RFD L + + +VYKVET+GDKYMT SG+P+ I++ +C LALDM + + +V +DG+ V++T GIH+GEVV GVIG++MPRYCLFGN+VNL SRTETTG GKINV+EYTY+ + + ++P F + R P+ MKGK EPM + LSR+
Sbjct: 1 MYGFVNHALELLVIRNYGPEVWEDIKKEAQLDEEGQFLVRIIYDDSKTYDLVAAASKVLNLNAGEILQMFGKMFFVFCQESGYDTILRVLGSNVREFLQNLDALHDHLATIYPGMRAPSFRCTDAEKGKGLILHYYSEREGLQDIVIGIIKTVAQQIHGTEIDM-------KVIQQRNEECDHTQFLIEEKESKEEDFYEDLDRFEENGTQESRISPYTFCKAFPFHIIFDRDLVVTQCGNAIYRVLPQLQPGNCSLLSVFSLVRPHIDISFHGILSHINTVFVLRSKEGLLDVEKLECEDELTGTEISCLRLKGQMIYLPEADSILFLCSPSVMNLDDLTRRGLYLSDIPLHDATRDLVLLGEQFREEYKLTQELEILTDRLQLTLRALEDEKKKTDTLLYSVLPPSVANELRHKRPVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTL---TDSRKNPFVYKVETVGDKYMTVSGLPEPCIHHARSICHLALDMMEIAGQVQVDGESVQITIGIHTGEVVTGVIGQRMPRYCLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDP------QFHLEHRGPVSMKGKKEPMQVWFLSRK 607 The following BLAST results are available for this feature:
BLAST of TCONS_00010290 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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