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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010243 ID=TCONS_00010243|Name=TCONS_00010243|organism=Clytia hemisphaerica|type=transcript|length=1396bp
CCTTGACACGTCAACACCGCAAACACTACGCCCTTTTTCAATCAATCTCT
CTCAAAGTGAAGACGTACTCTGACCGAAAATGGCATCAAACCATCCCAAC
GAAGATTGGATACCGTCAAGTCAACAATACCAAGAAGAACCTACCCCACC
ACAGGAGGAAGAAGAACCACTTCCAAATCCACAGCCAGATTTACCAGGTG
TCAAAATTGGCTACATACATGGAGTGAAGAACTTGACAGAAAGCAACACC
CCTGACAAACGTAATTTCTTTACATGTATGCTTCAAACAGAAGACTCAAT
GGTTCGCACAGTATGCTTCAGCCCAACAaagagaaaactttttacaGAAG
TTCAAAACTCCTGTGTACCAGTCAAAATCAGCAAAACCACCAATGCATCG
GGCTCAGGAGACATCTTTTTTCACCGTGACTCAACGGTATCCCTCATGAA
GTCTGTGCCATTTCCTTACCGAGGTCATGATGTGAAAGGTGAAGAATTTG
TATCTATCTCTGATCTCTCCCAGCTTGCACCCTTTGAATTTGTCAATGTC
AGAGCTCAAGCTTCAATTGTAGATGACCCAACTGAAACAATCGACTGGAA
CAACAATGAACCTCTGGCAAAGCAAGAAATAACAATTACTGACAGCACTG
GTTCCTGTACTGTGTTTCTGTATGGTGATTATGTTGGAGCTTTAAAATGC
GGTAAAAGCTATGAAATTAAAAATCTCAGGCTTCGCAAAAATGCCAATCA
CTTCTACCTCAATAGCTCTGTAAAAGAGACTGTCACCTTCAAAGAGATTG
ACAATTTACAAGATCTAGCTGCTGTGATGAAAGATGGTGATGTCACTCTT
CAAGGTATAATTATTGGTATTTCCAAAGTAAATGTgcaattcttttgtat
tttgtgCAACAAAAAGGCAACACTTGTCAATGATAATACAGTTGAGTGTG
TATCAAAATTGTGCCAATCAAAATATGGAAAAGTCAATGCCAAGTCGTCG
ATTACATTGACTGCGCCATTTAAATCTTTTAATGCGACTTACAAACTTTT
CTTCAACAATGAAATGCTTAAAAAACTATCAGAAATTTTGCAATTTGACG
TTGATGAAGAAAGCATCGCAAAAACACTTTTCTCTGGCAATCTACCTGAA
ATCTTGGTCACGTTCAACAAATTTTCCAACACAGTGAAGAATGTTGTTAT
GCCGGAATGAAATTTCCAAATATCTGACTTTGTTCTTTAGTCCATCGGAC
TTTAGTATTTATACGACAGTTAGTTTATTTCATTGTATATATATAGCTTA
TTAAAACCCatttaaacattcttttgttttttaagttgcttcatttttca
cttGCCAGCAGcattccaaaaattaagaaaatgcaGATCTTTCATT Run BLAST on NCBI protein sequence of TCONS_00010243-protein >TCONS_00010243-protein ID=TCONS_00010243-protein|Name=TCONS_00010243-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp
MASNHPNEDWIPSSQQYQEEPTPPQEEEEPLPNPQPDLPGVKIGYIHGVK
NLTESNTPDKRNFFTCMLQTEDSMVRTVCFSPTKRKLFTEVQNSCVPVKI
SKTTNASGSGDIFFHRDSTVSLMKSVPFPYRGHDVKGEEFVSISDLSQLA
PFEFVNVRAQASIVDDPTETIDWNNNEPLAKQEITITDSTGSCTVFLYGD
YVGALKCGKSYEIKNLRLRKNANHFYLNSSVKETVTFKEIDNLQDLAAVM
KDGDVTLQGIIIGISKVNVQFFCILCNKKATLVNDNTVECVSKLCQSKYG
KVNAKSSITLTAPFKSFNATYKLFFNNEMLKKLSEILQFDVDEESIAKTL
FSGNLPEILVTFNKFSNTVKNVVMPE Run BLAST on NCBI transcript from alignment at sc0000104:4483..7082+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010243 ID=TCONS_00010243|Name=TCONS_00010243|organism=Clytia hemisphaerica|type=transcript|length=2600bp|location=Sequence derived from alignment at sc0000104:4483..7082+ (Clytia hemisphaerica)
CCTTGACACGTCAACACCGCAAACACTACGCCCTTTTTCAATCAATCTCT
CTCAAAGTGAAGACGTACTCTGACCGAAAATGGCATCAAACCATCCCAAC
GAAGGTTAGAGAAATacattcattttttcaatcaaaagccTGATTCACAC
ACATCTACCATCAATAATTGAACAAATGATTTATTTGAACCTAAGAGGAT
GTAACGATAAAGATACGGAGCTAATTACATAATGATACAATAATGAAAGT
AAATATTTTATGAACCTTGTAATTCCAAACTACTTTTTAACTATTTAGAT
TGGATACCGTCAAGTCAACAATACCAAGAAGAACCTACCCCACCACAGGA
GGAAGAAGAACCACTTCCAAATCCACAGCCAGGTTGGTGCATCATATTCT
GAGCTCATTTAATTAAGTAAATCACTATTTCAAGCAAGGGGTAAATCTCT
TTTTCAACAATATGTGTAGAGGTCgaaagattttaaagattttttagaat
TAGTTAGGAATTTTCTTAGGTTACAAAATTTTGGGGTTTTTTAGggattt
tttttgacattttttggaaaGTGTACGAGGTTTTTTCGAGTGATTTTTAC
TCCTCGTTCAAATGTGTCAATTTAATGATCTGtttccttttattttattt
cttcaatgattgtttgatttttttcttgacAGATTTTGTTGACTTTGATT
TCTTTGATCTTGTGTGCTTGATGTTAGTTCCTTGTATTTTTATCTCATTT
GATTATCCTATTATTAATCCATACATAAGCTAATGAGATTAACCCTCTGT
TACAAACACTTTCTACATTGAATTCGTTTTcttgaattcattttttgact
ttttgactgtcattgattttgttgattttgtttttcttcctctgGACTAA
ATAACACTCAAAAATTCAGGATTATTTAAGGTTTTAAATCTACACATTCT
TTCTGATAACTAACATTTGGAAGACAAAATATGAATTTGAAATCTCAAAT
TTTCATGCCTCACATGTGCCTCTCATTGCAATTCTATATTTTTCAAACAG
AAAGTaaaaattataaacataaaaCCTCTAAATACTATTTCCACTTTAAA
AAACAAAGAGCCAGTTAAATTTGCAGCCTTAAGGActaaatatacgtttt
tttataagaataccttCTATAAGAATAACAGGAAAAAAATTGGCCAATGG
CCTTTTTTGGCCCTTTTGTTTGACTTAAATTTAAATGTGTGCTCAATCTG
GCTAAACAAGAAACTCTAAAAggtatttttcatgtttttataaaGCTCAA
GTCTGAaaagtaagaatatttcaccctcaattccAGCAATTTCTTAAAGA
AATTTCTTAATATCACTTAAACAACGATAACTTATGTTTTAGATTTACCA
GGTGTCAAAATTGGCTACATACATGGAGTGAAGAACTTGACAGAAAGCAA
CACCCCTGACAAACGTAATTTCTTTACATGTATGCTTCAAACAGAAGACT
CAATGGTTCGCACAGTATGCTTCAGCCCAACAaagagaaaactttttaca
GAAGTTCAAAACTCCTGTGTACCAGTCAAAATCAGCAAAACCACCAATGC
ATCGGGCTCAGGAGACATCTTTTTTCACCGTGACTCAACGGTATCCCTCA
TGAAGTCTGTGCCATTTCCTTACCGAGGTCATGATGTGAAAGGTGAAGAA
TTTGTATCTATCTCTGATCTCTCCCAGCTTGCACCCTTTGAATTTGTCAA
TGTCAGAGCTCAAGCTTCAATTGTAGATGACCCAACTGAAACAATCGACT
GGAACAACAATGAACCTCTGGCAAAGCAAGAAATAACAATTACTGACAGC
ACTGGTTCCTGTACTGTGTTTCTGTATGGTGATTATGTTGGAGCTTTAAA
ATGCGGTAAAAGCTATGAAATTAAAAATCTCAGGCTTCGCAAAAATGCCA
ATCACTTCTACCTCAATAGCTCTGTAAAAGAGACTGTCACCTTCAAAGAG
ATTGACAATTTACAAGATCTAGCTGCTGTGATGAAAGATGGTGATGTCAC
TCTTCAAGGTATAATTATTGGTATTTCCAAAGTAAATGTgcaattctttt
gtattttgtgCAACAAAAAGGCAACACTTGTCAATGATAATACAGTTGAG
TGTGTATCAAAATTGTGCCAATCAAAATATGGAAAAGTCAATGCCAAGTC
GTCGATTACATTGACTGCGCCATTTAAATCTTTTAATGCGACTTACAAAC
TTTTCTTCAACAATGAAATGCTTAAAAAACTATCAGAAATTTTGCAATTT
GACGTTGATGAAGAAAGCATCGCAAAAACACTTTTCTCTGGCAATCTACC
TGAAATCTTGGTCACGTTCAACAAATTTTCCAACACAGTGAAGAATGTTG
TTATGCCGGAATGAAATTTCCAAATATCTGACTTTGTTCTTTAGTCCATC
GGACTTTAGTATTTATACGACAGTTAGTTTATTTCATTGTATATATATAG
CTTATTAAAACCCatttaaacattcttttgttttttaagttgcttcattt
ttcacttGCCAGCAGcattccaaaaattaagaaaatgcaGATCTTTCATT
Coding sequence (CDS) from alignment at sc0000104:4483..7082+ >TCONS_00010243 ID=TCONS_00010243|Name=TCONS_00010243|organism=Clytia hemisphaerica|type=CDS|length=3393bp|location=Sequence derived from alignment at sc0000104:4483..7082+ (Clytia hemisphaerica)
ATGGCATCAAACCATCCCAACGAAGATTGGATACCGTCAAGTCAACAATA
CCAAGAAGAACCTACCCCACCACAGGAGGAAGAAGAACCACTTCCAAATC
CACAGCCAGATTTACCAGGTGTCAAAATTGGCTACATACATGGAGTGAAG
AACTTGACAGAAAGCAACACCCCTGACAAACGTAATTTCTTTACATGTAT
GCTTCAAACAGAAGACTCAATGGTTCGCACAGTATGCTTCAGCCCAACAa
agagaaaactttttacaGAAGTTCAAAACTCCTGTGTACCAGTCAAAATC
AGCAAAACCACCAATGCATCGGGCTCAGGAGACATCTTTTTTCACCGTGA
CTCAACGGTATCCCTCATGAAGTCTGTGCCATTTCCTTACCGAGGTCATG
ATGTGAAAGGTGAAGAATTTGTATCTATCTCTGATCTCTCCCAGCTTGCA
CCCTTTGAATTTGTCAATGTCAGAGCTCAAGCTTCAATTGTAGATGACCC
AACTGAAACAATCGACTGGAACAACAATGAACCTCTGGCAAAGCAAGAAA
TAACAATTACTGACAGCACTGGTTCCTGTACTGTGTTTCTGTATGGTGAT
TATGTTGGAGCTTTAAAATGCGGTAAAAGCTATGAAATTAAAAATCTCAG
GCTTCGCAAAAATGCCAATCACTTCTACCTCAATAGCTCTGTAAAAGAGA
CTGTCACCTTCAAAGAGATTGACAATTTACAAGATCTAGCTGCTGTGATG
AAAGATGGTGATGTCACTCTTCAAGGTATAATTATTGGTATTTCCAAAGT
AAATGTgcaattcttttgtattttgtgCAACAAAAAGGCAACACTTGTCA
ATGATAATACAGTTGAGTGTGTATCAAAATTGTGCCAATCAAAATATGGA
AAAGTCAATGCCAAGTCGTCGATTACATTGACTGCGCCATTTAAATCTTT
TAATGCGACTTACAAACTTTTCTTCAACAATGAAATGCTTAAAAAACTAT
CAGAAATTTTGCAATTTGACGTTGATGAAGAAAGCATCGCAAAAACACTT
TTCTCTGGCAATCTACCTGAAATCTTGGTCACGTTCAACAAATTTTCCAA
CACAGTGAAGAATGTTGTTATGCCGGAATGAATGGCATCAAACCATCCCA
ACGAAGATTGGATACCGTCAAGTCAACAATACCAAGAAGAACCTACCCCA
CCACAGGAGGAAGAAGAACCACTTCCAAATCCACAGCCAGATTTACCAGG
TGTCAAAATTGGCTACATACATGGAGTGAAGAACTTGACAGAAAGCAACA
CCCCTGACAAACGTAATTTCTTTACATGTATGCTTCAAACAGAAGACTCA
ATGGTTCGCACAGTATGCTTCAGCCCAACAaagagaaaactttttacaGA
AGTTCAAAACTCCTGTGTACCAGTCAAAATCAGCAAAACCACCAATGCAT
CGGGCTCAGGAGACATCTTTTTTCACCGTGACTCAACGGTATCCCTCATG
AAGTCTGTGCCATTTCCTTACCGAGGTCATGATGTGAAAGGTGAAGAATT
TGTATCTATCTCTGATCTCTCCCAGCTTGCACCCTTTGAATTTGTCAATG
TCAGAGCTCAAGCTTCAATTGTAGATGACCCAACTGAAACAATCGACTGG
AACAACAATGAACCTCTGGCAAAGCAAGAAATAACAATTACTGACAGCAC
TGGTTCCTGTACTGTGTTTCTGTATGGTGATTATGTTGGAGCTTTAAAAT
GCGGTAAAAGCTATGAAATTAAAAATCTCAGGCTTCGCAAAAATGCCAAT
CACTTCTACCTCAATAGCTCTGTAAAAGAGACTGTCACCTTCAAAGAGAT
TGACAATTTACAAGATCTAGCTGCTGTGATGAAAGATGGTGATGTCACTC
TTCAAGGTATAATTATTGGTATTTCCAAAGTAAATGTgcaattcttttgt
attttgtgCAACAAAAAGGCAACACTTGTCAATGATAATACAGTTGAGTG
TGTATCAAAATTGTGCCAATCAAAATATGGAAAAGTCAATGCCAAGTCGT
CGATTACATTGACTGCGCCATTTAAATCTTTTAATGCGACTTACAAACTT
TTCTTCAACAATGAAATGCTTAAAAAACTATCAGAAATTTTGCAATTTGA
CGTTGATGAAGAAAGCATCGCAAAAACACTTTTCTCTGGCAATCTACCTG
AAATCTTGGTCACGTTCAACAAATTTTCCAACACAGTGAAGAATGTTGTT
ATGCCGGAATGAATGGCATCAAACCATCCCAACGAAGATTGGATACCGTC
AAGTCAACAATACCAAGAAGAACCTACCCCACCACAGGAGGAAGAAGAAC
CACTTCCAAATCCACAGCCAGATTTACCAGGTGTCAAAATTGGCTACATA
CATGGAGTGAAGAACTTGACAGAAAGCAACACCCCTGACAAACGTAATTT
CTTTACATGTATGCTTCAAACAGAAGACTCAATGGTTCGCACAGTATGCT
TCAGCCCAACAaagagaaaactttttacaGAAGTTCAAAACTCCTGTGTA
CCAGTCAAAATCAGCAAAACCACCAATGCATCGGGCTCAGGAGACATCTT
TTTTCACCGTGACTCAACGGTATCCCTCATGAAGTCTGTGCCATTTCCTT
ACCGAGGTCATGATGTGAAAGGTGAAGAATTTGTATCTATCTCTGATCTC
TCCCAGCTTGCACCCTTTGAATTTGTCAATGTCAGAGCTCAAGCTTCAAT
TGTAGATGACCCAACTGAAACAATCGACTGGAACAACAATGAACCTCTGG
CAAAGCAAGAAATAACAATTACTGACAGCACTGGTTCCTGTACTGTGTTT
CTGTATGGTGATTATGTTGGAGCTTTAAAATGCGGTAAAAGCTATGAAAT
TAAAAATCTCAGGCTTCGCAAAAATGCCAATCACTTCTACCTCAATAGCT
CTGTAAAAGAGACTGTCACCTTCAAAGAGATTGACAATTTACAAGATCTA
GCTGCTGTGATGAAAGATGGTGATGTCACTCTTCAAGGTATAATTATTGG
TATTTCCAAAGTAAATGTgcaattcttttgtattttgtgCAACAAAAAGG
CAACACTTGTCAATGATAATACAGTTGAGTGTGTATCAAAATTGTGCCAA
TCAAAATATGGAAAAGTCAATGCCAAGTCGTCGATTACATTGACTGCGCC
ATTTAAATCTTTTAATGCGACTTACAAACTTTTCTTCAACAATGAAATGC
TTAAAAAACTATCAGAAATTTTGCAATTTGACGTTGATGAAGAAAGCATC
GCAAAAACACTTTTCTCTGGCAATCTACCTGAAATCTTGGTCACGTTCAA
CAAATTTTCCAACACAGTGAAGAATGTTGTTATGCCGGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010243-exon-sc0000104-1491911889:4483..4586 | TCONS_00010243-exon-sc0000104-1491911889:4483..4586 | Clytia hemisphaerica | exon |
| TCONS_00010243-exon-sc0000104-1510915933:4483..4586 | TCONS_00010243-exon-sc0000104-1510915933:4483..4586 | Clytia hemisphaerica | exon |
| TCONS_00010243-exon-sc0000104-1575043694:4483..4586 | TCONS_00010243-exon-sc0000104-1575043694:4483..4586 | Clytia hemisphaerica | exon |
| TCONS_00010243-exon-sc0000104-1491911889:4781..4864 | TCONS_00010243-exon-sc0000104-1491911889:4781..4864 | Clytia hemisphaerica | exon |
| TCONS_00010243-exon-sc0000104-1510915933:4781..4864 | TCONS_00010243-exon-sc0000104-1510915933:4781..4864 | Clytia hemisphaerica | exon |
| TCONS_00010243-exon-sc0000104-1575043694:4781..4864 | TCONS_00010243-exon-sc0000104-1575043694:4781..4864 | Clytia hemisphaerica | exon |
| TCONS_00010243-exon-sc0000104-1491911889:5875..7082 | TCONS_00010243-exon-sc0000104-1491911889:5875..7082 | Clytia hemisphaerica | exon |
| TCONS_00010243-exon-sc0000104-1510915933:5875..7082 | TCONS_00010243-exon-sc0000104-1510915933:5875..7082 | Clytia hemisphaerica | exon |
| TCONS_00010243-exon-sc0000104-1575043694:5875..7082 | TCONS_00010243-exon-sc0000104-1575043694:5875..7082 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000104 | supercontig | sc0000104:4483..7082 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012340 | NA-bd_OB-fold |
Blast
The following BLAST results are available for this feature:
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