TCONS_00010227 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010227
Unique NameTCONS_00010227
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length408

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010227 ID=TCONS_00010227|Name=TCONS_00010227|organism=Clytia hemisphaerica|type=transcript|length=408bp
NTTCAAGCCACAACAAACGTAAAACTATCAAGAACTGGTTATCACTCTAT
TGCTGCATCTCTACATCAACATTGTCAATCAAAGTGATGGACGACTACAG
TACTCCGTCGTTCCTCATGTCGTTCACTCGTTTCGCTTACGACAATGGGT
ATCCAAAGACAATGTACGTTGATCGAGGAAGTCAAATCATCAAAGGCTTC
CAAGgcaccaaaatcagtttcaacgATCTACAACATCGTCTTCACGTCGA
CGTTTTGATCGACTTCGAACTTTGTCCAGTTGGAGGTCACAATTACAATG
GAAAGGTCGAGAGAAAGATTCGTGAGGTGAAATCATCAATCGAAAAGTCG
TTTTCTGGGCATCGGTTATCAGTCATCCAATGGGAAACTATCTGCTCAGA
AGTCGCTN
Run BLAST on NCBI

protein sequence of TCONS_00010227-protein

>TCONS_00010227-protein ID=TCONS_00010227-protein|Name=TCONS_00010227-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
SSHNKRKTIKNWLSLYCCISTSTLSIKVMDDYSTPSFLMSFTRFAYDNGY
PKTMYVDRGSQIIKGFQGTKISFNDLQHRLHVDVLIDFELCPVGGHNYNG
KVERKIREVKSSIEKSFSGHRLSVIQWETICSEVA
Run BLAST on NCBI

transcript from alignment at sc0000103:384573..384980

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010227 ID=TCONS_00010227|Name=TCONS_00010227|organism=Clytia hemisphaerica|type=transcript|length=408bp|location=Sequence derived from alignment at sc0000103:384573..384980 (Clytia hemisphaerica)
NAGCGACTTCTGAGCAGATAGTTTCCCATTGGATGACTGATAACCGATGC
CCAGAAAACGACTTTTCGATTGATGATTTCACCTCACGAATCTTTCTCTC
GACCTTTCCATTGTAATTGTGACCTCCAACTGGACAAAGTTCGAAGTCGA
TCAAAACGTCGACGTGAAGACGATGTTGTAGATcgttgaaactgattttg
gtgcCTTGGAAGCCTTTGATGATTTGACTTCCTCGATCAACGTACATTGT
CTTTGGATACCCATTGTCGTAAGCGAAACGAGTGAACGACATGAGGAACG
ACGGAGTACTGTAGTCGTCCATCACTTTGATTGACAATGTTGATGTAGAG
ATGCAGCAATAGAGTGATAACCAGTTCTTGATAGTTTTACGTTTGTTGTG
GCTTGAAN

Coding sequence (CDS) from alignment at sc0000103:384573..384980

>TCONS_00010227 ID=TCONS_00010227|Name=TCONS_00010227|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at sc0000103:384573..384980 (Clytia hemisphaerica)
AGCGACTTCTGAGCAGATAGTTTCCCATTGGATGACTGATAACCGATGCC
CAGAAAACGACTTTTCGATTGATGATTTCACCTCACGAATCTTTCTCTCG
ACCTTTCCATTGTAATTGTGACCTCCAACTGGACAAAGTTCGAAGTCGAT
CAAAACGTCGACGTGAAGACGATGTTGTAGATcgttgaaactgattttgg
tgcCTTGGAAGCCTTTGATGATTTGACTTCCTCGATCAACGTACATTGTC
TTTGGATACCCATTGTCGTAAGCGAAACGAGTGAACGACATGAGGAACGA
CGGAGTACTGTAGTCGTCCATCACTTTGATTGACAATGTTGATGTAGAGA
TGCAGCAATAGAGTGATAACCAGTTCTTGATAGTTTTACGTTTGTTGTGG
CTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005745XLOC_005745Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010227-proteinTCONS_00010227-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010227-exon-sc0000103-1491911889:384573..384980TCONS_00010227-exon-sc0000103-1491911889:384573..384980Clytia hemisphaericaexon
TCONS_00010227-exon-sc0000103-1510915933:384573..384980TCONS_00010227-exon-sc0000103-1510915933:384573..384980Clytia hemisphaericaexon
TCONS_00010227-exon-sc0000103-1575043694:384573..384980TCONS_00010227-exon-sc0000103-1575043694:384573..384980Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103supercontigsc0000103:384573..384980 .
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.01949	4.04297	2.75949	1.18492	2.23283	1.70985	1.71226	1.28749	0.600933	2.41915	1.44497	1.54354	0.917227	0.686051	0.404933	0.869111	0.936839	1.09741	1.51613	1.54074	0.172371	0.25223	0.613237	0.185841	1.86017	2.56245	0.733372	0.260892	1.18726	1.14503
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010227 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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