TCONS_00010225 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010225
Unique NameTCONS_00010225
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length760

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010225 ID=TCONS_00010225|Name=TCONS_00010225|organism=Clytia hemisphaerica|type=transcript|length=760bp
GTTTGTTGACATCAGAATCTTGTAATGGGAGTAAGTTTGCAATATAGAGC
GTGCATTGGTTTATTTAACtctattaaatttattttagtgaGCTTTGACT
TTTGTGTGGGTTTTGATTTAAGTCTTTTGGTTTTCCCGAATCTCTTATTC
TGTCTTCCCTacttctttttactttttaagcTTACTCTTCTTCTCCTAGG
AGGTGACATTGAGTCGAATCCGGGGCCGGTGGAGAGGGATAACACCTTGT
CTGTTTGTCATTGGAATCTAAATAGCGTTTGGGTTGATAACTTTGCGAAG
ATTGCTCAAATCACAGCTTCTTTAAATGTTCAtaagtttgatatcttttg
tGTTGGTGAATCCTTTCTCGATTCTTCTATCGAGACGGACGATCTAAGGC
TAAAGATTGATAACTATGAACTCCTTAGATCCGACCACTCTTCGAATTCT
AAAATGGGTGGAGTGTGCCTATATCGCAGAGTTGGTATCTTTGTTGAGGA
AAGACCTGATCTGTCCTCTCTTGATGAGTGTCTTGTTTGCGAAGTTAATT
CTGGtactaaaaaactttttctttgtctTCTCTATCGTTCCCCAAGTCAA
GATGCGGATGAATTCGCAGACTTTAAGCATAAATGGGAGCAGACAATTAT
AAATATAAGCAACATTTCTTCTGCTGGCACGATTCTACTTGGTGATTTCA
ATGGGAGGAATTCGGAATGGTGGGCTGGAGATACAACAAATTCCCAAGGT
GAGGACATTA
Run BLAST on NCBI

protein sequence of TCONS_00010225-protein

>TCONS_00010225-protein ID=TCONS_00010225-protein|Name=TCONS_00010225-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MGVSLQYRACIGLFNSIKFILVSFDFCVGFDLSLLVFPNLLFCLPYFFLL
FKLTLLLLGGDIESNPGPVERDNTLSVCHWNLNSVWVDNFAKIAQITASL
NVHKFDIFCVGESFLDSSIETDDLRLKIDNYELLRSDHSSNSKMGGVCLY
RRVGIFVEERPDLSSLDECLVCEVNSGTKKLFLCLLYRSPSQDADEFADF
KHKWEQTIINISNISSAGTILLGDFNGRNSEWWAGDTTNSQGEDI
Run BLAST on NCBI

transcript from alignment at sc0000103:381607..382366

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010225 ID=TCONS_00010225|Name=TCONS_00010225|organism=Clytia hemisphaerica|type=transcript|length=760bp|location=Sequence derived from alignment at sc0000103:381607..382366 (Clytia hemisphaerica)
TAATGTCCTCACCTTGGGAATTTGTTGTATCTCCAGCCCACCATTCCGAA
TTCCTCCCATTGAAATCACCAAGTAGAATCGTGCCAGCAGAAGAAATGTT
GCTTATATTTATAATTGTCTGCTCCCATTTATGCTTAAAGTCTGCGAATT
CATCCGCATCTTGACTTGGGGAACGATAGAGAagacaaagaaaaagtttt
ttagtaCCAGAATTAACTTCGCAAACAAGACACTCATCAAGAGAGGACAG
ATCAGGTCTTTCCTCAACAAAGATACCAACTCTGCGATATAGGCACACTC
CACCCATTTTAGAATTCGAAGAGTGGTCGGATCTAAGGAGTTCATAGTTA
TCAATCTTTAGCCTTAGATCGTCCGTCTCGATAGAAGAATCGAGAAAGGA
TTCACCAACacaaaagatatcaaacttaTGAACATTTAAAGAAGCTGTGA
TTTGAGCAATCTTCGCAAAGTTATCAACCCAAACGCTATTTAGATTCCAA
TGACAAACAGACAAGGTGTTATCCCTCTCCACCGGCCCCGGATTCGACTC
AATGTCACCTCCTAGGAGAAGAAGAGTAAgcttaaaaagtaaaaagaagt
AGGGAAGACAGAATAAGAGATTCGGGAAAACCAAAAGACTTAAATCAAAA
CCCACACAAAAGTCAAAGCtcactaaaataaatttaatagaGTTAAATAA
ACCAATGCACGCTCTATATTGCAAACTTACTCCCATTACAAGATTCTGAT
GTCAACAAAC

Coding sequence (CDS) from alignment at sc0000103:381607..382366

>TCONS_00010225 ID=TCONS_00010225|Name=TCONS_00010225|organism=Clytia hemisphaerica|type=CDS|length=735bp|location=Sequence derived from alignment at sc0000103:381607..382366 (Clytia hemisphaerica)
AATGTCCTCACCTTGGGAATTTGTTGTATCTCCAGCCCACCATTCCGAAT
TCCTCCCATTGAAATCACCAAGTAGAATCGTGCCAGCAGAAGAAATGTTG
CTTATATTTATAATTGTCTGCTCCCATTTATGCTTAAAGTCTGCGAATTC
ATCCGCATCTTGACTTGGGGAACGATAGAGAagacaaagaaaaagttttt
tagtaCCAGAATTAACTTCGCAAACAAGACACTCATCAAGAGAGGACAGA
TCAGGTCTTTCCTCAACAAAGATACCAACTCTGCGATATAGGCACACTCC
ACCCATTTTAGAATTCGAAGAGTGGTCGGATCTAAGGAGTTCATAGTTAT
CAATCTTTAGCCTTAGATCGTCCGTCTCGATAGAAGAATCGAGAAAGGAT
TCACCAACacaaaagatatcaaacttaTGAACATTTAAAGAAGCTGTGAT
TTGAGCAATCTTCGCAAAGTTATCAACCCAAACGCTATTTAGATTCCAAT
GACAAACAGACAAGGTGTTATCCCTCTCCACCGGCCCCGGATTCGACTCA
ATGTCACCTCCTAGGAGAAGAAGAGTAAgcttaaaaagtaaaaagaagtA
GGGAAGACAGAATAAGAGATTCGGGAAAACCAAAAGACTTAAATCAAAAC
CCACACAAAAGTCAAAGCtcactaaaataaatttaatagaGTTAAATAAA
CCAATGCACGCTCTATATTGCAAACTTACTCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005743XLOC_005743Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010225-proteinTCONS_00010225-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010225-exon-sc0000103-1491911889:381607..382366TCONS_00010225-exon-sc0000103-1491911889:381607..382366Clytia hemisphaericaexon
TCONS_00010225-exon-sc0000103-1510915933:381607..382366TCONS_00010225-exon-sc0000103-1510915933:381607..382366Clytia hemisphaericaexon
TCONS_00010225-exon-sc0000103-1575043694:381607..382366TCONS_00010225-exon-sc0000103-1575043694:381607..382366Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103supercontigsc0000103:381607..382366 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0643879	0.0627884	0.21871	0.213973	0.868307	0.754763	0.579466	0.387492	0.434068	1.14253	0.587102	0.300174	0.299757	1.11179	0.438739	0.274653	0.193343	0.297256	0.410675	0.358118	0.435777	0.364383	0	0.134237	0.483913	0.431881	0.264866	0.282672	0.142931	0.0728121
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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